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1.
Molecules ; 27(13)2022 Jun 23.
Artigo em Inglês | MEDLINE | ID: mdl-35807291

RESUMO

Repair of Iron Center proteins (RIC) form a family of di-iron proteins that are widely spread in the microbial world. RICs contain a binuclear nonheme iron site in a four-helix bundle fold, two basic features of hemerythrin-like proteins. In this work, we review the data on microbial RICs including how their genes are regulated and contribute to the survival of pathogenic bacteria. We gathered the currently available biochemical, spectroscopic and structural data on RICs with a particular focus on Escherichia coli RIC (also known as YtfE), which remains the best-studied protein with extensive biochemical characterization. Additionally, we present novel structural data for Escherichia coli YtfE harboring a di-manganese site and the protein's affinity for this metal. The networking of protein interactions involving YtfE is also described and integrated into the proposed physiological role as an iron donor for reassembling of stress-damaged iron-sulfur centers.


Assuntos
Proteínas de Escherichia coli , Proteínas Ferro-Enxofre , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/metabolismo , Hemeritrina/genética , Hemeritrina/metabolismo , Ferro/química , Proteínas Ferro-Enxofre/metabolismo , Enxofre/metabolismo
2.
Plasmid ; 109: 102503, 2020 05.
Artigo em Inglês | MEDLINE | ID: mdl-32209400

RESUMO

Pseudomonas putida is a highly attractive production system for industrial needs. However, for its improvement as a biocatalyst at the industrial level, modulation of its gene expression is urgently needed. We report the construction of a plasmid expressing a small RNA-based system with the potential to be used for different purposes. Due to the small RNAs modular composition, the design facilities and ability to tune gene expression, they constitute a powerful tool in genetic and metabolic engineering. In the tool presented here, customized sRNAs are expressed from a plasmid and specifically directed to any region of a chosen target. Expression of these customized sRNAs is shown to differentially modulate the level of endogenous and heterologous reporter genes. The antisense interaction of the sRNA with the mRNA produces different outcomes. Depending on the particularity of each sRNA-target mRNA pair, we demonstrate the duality of this system, which is able either to decrease or increase the expression of the same given gene. This system combines high specificity with the potential to be widely applied, due to its predicted ability to modulate the expression of virtually any given gene. This plasmid can be used to redesign P. putida metabolism, fulfilling an important industrial gap.


Assuntos
Regulação Bacteriana da Expressão Gênica , Plasmídeos/genética , Pseudomonas putida/genética , RNA Bacteriano , RNA Mensageiro/genética , Pequeno RNA não Traduzido/genética , Engenharia Genética
3.
J Struct Biol ; 205(1): 91-102, 2019 01 01.
Artigo em Inglês | MEDLINE | ID: mdl-30447285

RESUMO

Flavodiiron proteins (FDPs) play key roles in biological response mechanisms against oxygen and/or nitric oxide; in particular they are present in oxygenic phototrophs (including cyanobacteria and gymnosperms). Two conserved domains define the core of this family of proteins: a N-terminal metallo-ß-lactamase-like domain followed by a C-terminal flavodoxin-like one, containing the catalytic diiron centre and a FMN cofactor, respectively. Members of the FDP family may present extra modules in the C-terminus, and were classified into several classes according to their distribution and composition. The cyanobacterium Synechocystis sp. PCC6803 contains four Class C FDPs (Flv1-4) that include at the C-terminus an additional NAD(P)H:flavin oxidoreductase (FlR) domain. Two of them (Flv3 and Flv4) have the canonical diiron ligands (Class C, Type 1), while the other two (Flv1 and Flv2) present different residues in that region (Class C, Type 2). Most phototrophs, either Bacterial or Eukaryal, contain at least two FDP genes, each encoding for one of those two types. Crystals of the Flv1 two core domains (Flv1-ΔFlR), without the C-terminal NAD(P)H:flavin oxidoreductase extension, were obtained and the structure was determined. Its pseudo diiron site contains non-canonical basic and neutral residues, and showed anion moieties, instead. The presented structure revealed for the first time the structure of the two-domain core of a Class C-Type 2 FDP.


Assuntos
Proteínas de Bactérias/química , Ferroproteínas não Heme/química , Synechocystis/química , Ferro , Ligantes , Estrutura Molecular , Domínios Proteicos
4.
Mol Microbiol ; 109(3): 385-400, 2018 08.
Artigo em Inglês | MEDLINE | ID: mdl-29989674

RESUMO

Haem is an essential cofactor in central metabolic pathways in the vast majority of living systems. Prokaryotes acquire haem via haem biosynthesis pathways, and some also utilize haem uptake systems, yet it remains unclear how they balance haem requirements with the paradox that free haem is toxic. Here, using the model pathogen Staphylococcus aureus, we report that IsdG, one of two haem oxygenase enzymes in the haem uptake system, inhibits the formation of haem via the internal haem biosynthesis route. More specifically, we show that IsdG decreases the activity of ferrochelatase and that the two proteins interact both in vitro and in vivo. Further, a bioinformatics analysis reveals that a significant number of haem biosynthesis pathway containing organisms possess an IsdG-homologue and that those with both biosynthesis and uptake systems have at least two haem oxygenases. We conclude that IsdG-like proteins control intracellular haem levels by coupling the two pathways. IsdG is thus a target for the treatment of S. aureusinfections.


Assuntos
Heme/biossíntese , Oxigenases/metabolismo , Infecções Estafilocócicas/microbiologia , Staphylococcus aureus/enzimologia , Animais , Linhagem Celular , Ferroquelatase/genética , Ferroquelatase/metabolismo , Genes Bacterianos/genética , Humanos , Ferro/metabolismo , Macrófagos/microbiologia , Camundongos , Oxigenases/genética , RNA Bacteriano/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Staphylococcus aureus/genética
5.
Artigo em Inglês | MEDLINE | ID: mdl-31332064

RESUMO

In the last decade, carbon monoxide-releasing molecules (CORMs) have been shown to act against several pathogens and to be promising antimicrobials. However, the understanding of the mode of action and reactivity of these compounds on bacterial cells is still deficient. In this work, we used a metabolomics approach to probe the toxicity of the ruthenium(II) complex Ru(CO)3Cl(glycinate) (CORM-3) on Escherichia coli By resorting to 1H nuclear magnetic resonance, mass spectrometry, and enzymatic activities, we show that CORM-3-treated E. coli accumulates larger amounts of glycolytic intermediates, independently of the oxygen growth conditions. The work provides several evidences that CORM-3 inhibits glutamate synthesis and the iron-sulfur enzymes of the tricarboxylic acid (TCA) cycle and that the glycolysis pathway is triggered in order to establish an energy and redox homeostasis balance. Accordingly, supplementation of the growth medium with fumarate, α-ketoglutarate, glutamate, and amino acids cancels the toxicity of CORM-3. Importantly, inhibition of the iron-sulfur enzymes glutamate synthase, aconitase, and fumarase is only observed for compounds that liberate carbon monoxide. Altogether, this work reveals that the antimicrobial action of CORM-3 results from intracellular glutamate deficiency and inhibition of nitrogen and TCA cycles.


Assuntos
Antibacterianos/farmacologia , Monóxido de Carbono/farmacologia , Ciclo do Ácido Cítrico/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Regulação Bacteriana da Expressão Gênica , Nitrogênio/metabolismo , Compostos Organometálicos/farmacologia , Aconitato Hidratase/antagonistas & inibidores , Aconitato Hidratase/genética , Aconitato Hidratase/metabolismo , Antibacterianos/química , Monóxido de Carbono/química , Ciclo do Ácido Cítrico/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Fumarato Hidratase/antagonistas & inibidores , Fumarato Hidratase/genética , Fumarato Hidratase/metabolismo , Fumaratos/metabolismo , Glutamato Sintase/antagonistas & inibidores , Glutamato Sintase/genética , Glutamato Sintase/metabolismo , Ácido Glutâmico/metabolismo , Glicólise/efeitos dos fármacos , Glicólise/genética , Ácidos Cetoglutáricos/metabolismo , Espectroscopia de Ressonância Magnética , Metabolômica/métodos , Compostos Organometálicos/química , Oxirredução
6.
J Bacteriol ; 200(24)2018 12 15.
Artigo em Inglês | MEDLINE | ID: mdl-30249704

RESUMO

The RIC (repair of iron clusters) protein of Escherichia coli is a di-iron hemerythrin-like protein that has a proposed function in repairing stress-damaged iron-sulfur clusters. In this work, we performed a bacterial two-hybrid screening to search for RIC-protein interaction partners in E. coli As a result, the DNA-binding protein from starved cells (Dps) was identified, and its potential interaction with RIC was tested by bacterial adenylate cyclase-based two-hybrid (BACTH) system, bimolecular fluorescence complementation, and pulldown assays. Using the activity of two Fe-S-containing enzymes as indicators of cellular Fe-S cluster damage, we observed that strains with single deletions of ric or dps have significantly lower aconitase and fumarase activities. In contrast, the ric dps double mutant strain displayed no loss of aconitase and fumarase activity with respect to that of the wild type. Additionally, while complementation of the ric dps double mutant with ric led to a severe loss of aconitase activity, this effect was no longer observed when a gene encoding a di-iron site variant of the RIC protein was employed. The dps mutant exhibited a large increase in reactive oxygen species (ROS) levels, but this increase was eliminated when ric was also inactivated. Absence of other iron storage proteins, or of peroxidase and catalases, had no impact on RIC-mediated redox stress induction. Hence, we show that RIC interacts with Dps in a manner that serves to protect E. coli from RIC protein-induced ROS.IMPORTANCE The mammalian immune system produces reactive oxygen and nitrogen species that kill bacterial pathogens by damaging key cellular components, such as lipids, DNA, and proteins. However, bacteria possess detoxifying and repair systems that mitigate these deleterious effects. The Escherichia coli RIC (repair of iron clusters) protein is a di-iron hemerythrin-like protein that repairs stress-damaged iron-sulfur clusters. E. coli Dps is an iron storage protein of the ferritin superfamily with DNA-binding capacity that protects cells from oxidative stress. This work shows that the E. coli RIC and Dps proteins interact in a fashion that counters RIC protein-induced reactive oxygen species (ROS). Altogether, we provide evidence for the formation of a new bacterial protein complex and reveal a novel contribution for Dps in bacterial redox stress protection.


Assuntos
Proteínas da Membrana Bacteriana Externa/genética , Proteínas de Escherichia coli/genética , Escherichia coli/crescimento & desenvolvimento , Espécies Reativas de Oxigênio/metabolismo , Aconitato Hidratase/metabolismo , Proteínas da Membrana Bacteriana Externa/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/metabolismo , Fumarato Hidratase/metabolismo , Regulação Bacteriana da Expressão Gênica , Mutação , Oxirredução , Técnicas do Sistema de Duplo-Híbrido
7.
Environ Microbiol ; 19(1): 106-118, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27486032

RESUMO

The sulfate-reducing bacteria of the Desulfovibrio genus make three distinct modified tetrapyrroles, haem, sirohaem and adenosylcobamide, where sirohydrochlorin acts as the last common biosynthetic intermediate along the branched tetrapyrrole pathway. Intriguingly, D. vulgaris encodes two sirohydrochlorin chelatases, CbiKP and CbiKC , that insert cobalt/iron into the tetrapyrrole macrocycle but are thought to be distinctly located in the periplasm and cytoplasm respectively. Fusing GFP onto the C-terminus of CbiKP confirmed that the protein is transported to the periplasm. The structure-function relationship of CbiKP was studied by constructing eleven site-directed mutants and determining their chelatase activities, oligomeric status and haem binding abilities. Residues His154 and His216 were identified as essential for metal-chelation of sirohydrochlorin. The tetrameric form of the protein is stabilized by Arg54 and Glu76, which form hydrogen bonds between two subunits. His96 is responsible for the binding of two haem groups within the main central cavity of the tetramer. Unexpectedly, CbiKP is shown to bind two additional haem groups through interaction with His103. Thus, although still retaining cobaltochelatase activity, the presence of His96 and His103 in CbiKP , which are absent from all other known bacterial cobaltochelatases, has evolved CbiKP a new function as a haem binding protein permitting it to act as a potential haem chaperone or transporter.


Assuntos
Proteínas de Bactérias/genética , Desulfovibrio vulgaris/enzimologia , Desulfovibrio vulgaris/genética , Heme/análogos & derivados , Liases/genética , Tetrapirróis/metabolismo , Uroporfirinas/metabolismo , Sequência de Aminoácidos , Proteínas de Transporte/genética , Desulfovibrio vulgaris/metabolismo , Ferroquelatase/genética , Ferroquelatase/metabolismo , Heme/metabolismo , Proteínas Ligantes de Grupo Heme , Hemeproteínas/genética , Histidina/metabolismo
8.
Mol Microbiol ; 97(3): 472-87, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25908396

RESUMO

Haem is a life supporting molecule that is ubiquitous in all major kingdoms. In Staphylococcus aureus, the importance of haem is highlighted by the presence of systems both for the exogenous acquisition and endogenous synthesis of this prosthetic group. In this work, we show that in S. aureus the formation of haem involves the conversion of coproporphyrinogen III into coproporphyrin III by coproporphyrin synthase HemY, insertion of iron into coproporphyrin III via ferrochelatase HemH, and oxidative decarboxylation of Fe-coproporphyrin III into protohaem IX by Fe-coproporphyrin oxidase/dehydrogenase HemQ. Together, this route represents a transitional pathway between the classic pathway and the more recently acknowledged alternative biosynthesis machinery. The role of the haem biosynthetic pathway in the survival of the bacterium was investigated by testing for inhibitors of HemY. Analogues of acifluorfen are shown to inhibit the flavin-containing HemY, highlighting this protein as a suitable target for the development of drugs against S. aureus. Moreover, the presence of a transitional pathway for haem biosynthesis within many Gram positive pathogenic bacteria suggests that this route has the potential not only for the design of antimicrobials but also for the selective discrimination between bacteria operating different routes to the biosynthesis of haem.


Assuntos
Vias Biossintéticas/genética , Heme/biossíntese , Staphylococcus aureus/genética , Staphylococcus aureus/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Inibidores Enzimáticos/metabolismo , Enzimas/genética , Enzimas/metabolismo , Viabilidade Microbiana
9.
Microbiology (Reading) ; 162(3): 503-512, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26764024

RESUMO

Helicobacter pullorum is an avian enterohepatic species that, more recently, has also been found as a naturally acquired infection in mice and rats, and isolated from patients with gastrointestinal and hepatobiliary diseases. In this work, the interaction between H. pullorum and murine macrophages was examined. Firstly, the impact of nitric oxide, which is an antimicrobial produced by mammalian macrophages, on H. pullorum 6350-92 viability and morphology was studied by colony-forming assays and light microscopy, respectively. Exposure to nitric oxide lowered H. pullorum viability, in a growth-phase-dependent manner, and decreased the mean cell size. However, the number of coccoid forms remained low, contrasting with what has been observed for other Helicobacter species. Confocal microscopy showed that H. pullorum is internalized by murine macrophages, triggering nitric oxide production that promotes phagocytosis and killing of the pathogen. Interaction between H. pullorum and macrophages stimulated secretion of pro-inflammatory cytokines, such as TNF-α, IL-1ß, IL-6 and MIP-2. These results show that H. pullorum is able to infect mammalian murine cells triggering an inflammatory response.


Assuntos
Helicobacter/imunologia , Macrófagos/imunologia , Viabilidade Microbiana/efeitos dos fármacos , Óxido Nítrico/metabolismo , Fagocitose , Animais , Linhagem Celular , Contagem de Colônia Microbiana , Citocinas/metabolismo , Helicobacter/citologia , Helicobacter/efeitos dos fármacos , Camundongos , Microscopia
10.
Biochim Biophys Acta ; 1844(7): 1238-47, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24713144

RESUMO

An alternative route for haem b biosynthesis is operative in sulfate-reducing bacteria of the Desulfovibrio genus and in methanogenic Archaea. This pathway diverges from the canonical one at the level of uroporphyrinogen III and progresses via a distinct branch, where sirohaem acts as an intermediate precursor being converted into haem b by a set of novel enzymes, named the alternative haem biosynthetic proteins (Ahb). In this work, we report the biochemical characterisation of the Desulfovibrio vulgaris AhbD enzyme that catalyses the last step of the pathway. Mass spectrometry analysis showed that AhbD promotes the cleavage of S-adenosylmethionine (SAM) and converts iron-coproporphyrin III via two oxidative decarboxylations to yield haem b, methionine and the 5'-deoxyadenosyl radical. Electron paramagnetic resonance spectroscopy studies demonstrated that AhbD contains two [4Fe-4S](2+/1+) centres and that binding of the substrates S-adenosylmethionine and iron-coproporphyrin III induces conformational modifications in both centres. Amino acid sequence comparisons indicated that D. vulgaris AhbD belongs to the radical SAM protein superfamily, with a GGE-like motif and two cysteine-rich sequences typical for ligation of SAM molecules and iron-sulfur clusters, respectively. A structural model of D. vulgaris AhbD with putative binding pockets for the iron-sulfur centres and the substrates SAM and iron-coproporphyrin III is discussed.


Assuntos
Proteínas de Bactérias/metabolismo , Desulfovibrio vulgaris/enzimologia , Heme/biossíntese , Proteínas Ferro-Enxofre/metabolismo , Sequência de Aminoácidos , Catálise , Desulfovibrio vulgaris/crescimento & desenvolvimento , Espectroscopia de Ressonância de Spin Eletrônica , Dados de Sequência Molecular , Oxirredução , Conformação Proteica , S-Adenosilmetionina/metabolismo , Homologia de Sequência de Aminoácidos , Espectrofotometria Ultravioleta
11.
Mol Microbiol ; 93(2): 247-61, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24865947

RESUMO

Some bacteria and archaea synthesize haem by an alternative pathway, which involves the sequestration of sirohaem as a metabolic intermediate rather than as a prosthetic group. Along this pathway the two acetic acid side-chains attached to C12 and C18 are decarboxylated by sirohaem decarboxylase, a heterodimeric enzyme composed of AhbA and AhbB, to give didecarboxysirohaem. Further modifications catalysed by two related radical SAM enzymes, AhbC and AhbD, transform didecarboxysirohaem into Fe-coproporphyrin III and haem respectively. The characterization of sirohaem decarboxylase is reported in molecular detail. Recombinant versions of Desulfovibrio desulfuricans, Desulfovibrio vulgaris and Methanosarcina barkeri AhbA/B have been produced and their physical properties compared. The D. vulgaris and M. barkeri enzyme complexes both copurify with haem, whose redox state influences the activity of the latter. The kinetic parameters of the D. desulfuricans enzyme have been determined, the enzyme crystallized and its structure has been elucidated. The topology of the enzyme reveals that it shares a structural similarity to the AsnC/Lrp family of transcription factors. The active site is formed in the cavity between the two subunits and a AhbA/B-product complex with didecarboxysirohaem has been obtained. A mechanism for the decarboxylation of the kinetically stable carboxyl groups is proposed.


Assuntos
Carboxiliases/química , Carboxiliases/metabolismo , Desulfovibrio desulfuricans/enzimologia , Desulfovibrio vulgaris/enzimologia , Heme/análogos & derivados , Heme/biossíntese , Methanosarcina barkeri/enzimologia , Sequência de Aminoácidos , Proteínas Arqueais/química , Proteínas Arqueais/genética , Proteínas Arqueais/isolamento & purificação , Proteínas Arqueais/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Biocatálise , Carboxiliases/genética , Carboxiliases/isolamento & purificação , Domínio Catalítico , Desulfovibrio desulfuricans/genética , Desulfovibrio vulgaris/genética , Heme/isolamento & purificação , Heme/metabolismo , Cinética , Methanosarcina barkeri/genética , Oxirredução , Multimerização Proteica , Estrutura Terciária de Proteína , Fatores de Transcrição/química
12.
J Biol Inorg Chem ; 20(1): 155-164, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25476860

RESUMO

Superoxide reductases (SORs) are the most recently identified superoxide detoxification systems, being found in microorganisms from the three domains of life. These enzymes are characterized by a catalytic mononuclear iron site, with one cysteine and four histidine ligands of the ferrous active form. A lysine residue in the -EKHVP- motif, located close to the active site, has been considered to be essential for the enzyme function, by contributing to the positive surface patch that attracts the superoxide anion and by controlling the chemistry of the catalytic mechanism through a hydrogen bond network. However, we show here that this residue is substituted by non-equivalent amino acids in several putative SORs from Archaea and unicellular Eukarya. In this work, we focus on mechanistic and spectroscopic studies of one of these less common enzymes, the SOR from the hyperthermophilic Crenarchaeon Ignicoccus hospitalis. We employ pulse radiolysis fast kinetics and spectroscopic approaches to study the wild-type enzyme (-E23T24HVP-), and two mutants, T24K and E23A, the later mimicking enzymes lacking both the lysine and glutamate (a ferric ion ligand) of the motif. The efficiency of the wild-type protein and mutants in reducing superoxide is comparable to other SORs, revealing the robustness of these enzymes to single mutations.


Assuntos
Proteínas Arqueais/química , Desulfurococcaceae/enzimologia , Oxirredutases/química , Superóxidos/química , Sequência de Aminoácidos , Domínio Catalítico , Sequência Conservada , Cinética , Lisina , Dados de Sequência Molecular , Oxirredução
13.
Chemistry ; 21(42): 14708-12, 2015 Oct 12.
Artigo em Inglês | MEDLINE | ID: mdl-26316066

RESUMO

We have designed and synthesised a [Ru(CO)3 Cl2 (NAC)] pro-drug that features an N-acetyl cysteine (NAC) ligand. This NAC carbon monoxide releasing molecule (CORM) conjugate is able to simultaneously release biologically active CO and to ablate the concurrent formation of reactive oxygen species (ROS). Complexes of the general formulae [Ru(CO)3 (L)3 ](2+) , including [Ru(CO)3 Cl(glycinate)] (CORM-3), have been shown to produce ROS through a water-gas shift reaction, which contributes significantly, for example, to their antibacterial activity. In contrast, NAC-CORM conjugates do not produce ROS or possess antibacterial activity. In addition, we demonstrate the synergistic effect of CO and NAC both for the inhibition of nitric oxide (formation) and in the expression of tumour-necrosis factor (TNF)-α. This work highlights the advantages of combining a CO-releasing scaffold with the anti-oxidant and anti-inflammatory drug NAC in a unique pro-drug.

14.
Angew Chem Int Ed Engl ; 54(4): 1172-5, 2015 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-25477186

RESUMO

We demonstrate that Ru(II)(CO)2-protein complexes, formed by the reaction of the hydrolytic decomposition products of [fac-RuCl(κ(2)-H2NCH2CO2)(CO)3] (CORM-3) with histidine residues exposed on the surface of proteins, spontaneously release CO in aqueous solution, cells, and mice. CO release was detected by mass spectrometry (MS) and confocal microscopy using a CO-responsive turn-on fluorescent probe. These findings support our hypothesis that plasma proteins act as CO carriers after in vivo administration of CORM-3. CO released from a synthetic bovine serum albumin (BSA)-Ru(II)(CO)2 complex leads to downregulation of the cytokines interleukin (IL)-6, IL-10, and tumor necrosis factor (TNF)-α in cancer cells. Finally, administration of BSA-Ru(II)(CO)2 in mice bearing a colon carcinoma tumor results in enhanced CO accumulation at the tumor. Our data suggest the use of Ru(II)(CO)2-protein complexes as viable alternatives for the safe and spatially controlled delivery of therapeutic CO in vivo.


Assuntos
Compostos Organometálicos/química , Soroalbumina Bovina/química , Animais , Monóxido de Carbono/análise , Monóxido de Carbono/metabolismo , Bovinos , Linhagem Celular Tumoral , Feminino , Células HeLa , Histidina/química , Humanos , Interleucina-10/metabolismo , Interleucina-6/metabolismo , Espectrometria de Massas , Camundongos , Camundongos Endogâmicos BALB C , Neoplasias/tratamento farmacológico , Pró-Fármacos/química , Pró-Fármacos/metabolismo , Pró-Fármacos/uso terapêutico , Soroalbumina Bovina/metabolismo , Distribuição Tecidual , Transplante Heterólogo , Fator de Necrose Tumoral alfa/metabolismo
15.
Curr Microbiol ; 69(2): 164-8, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24682218

RESUMO

In Staphylococcus aureus, the intracellular siderophore staphyloferrin B, which has been shown to chelate iron-bound to serum transferrin, is transported into cells by the SirABC system. In this work, we have analysed the role of the Sir transporter under stress conditions that resemble those imposed by the mammalian innate immune system. We show that exposure of S. aureus to oxidative and nitrosative stress generated by hydrogen peroxide and S-nitrosoglutathione, respectively, induced the expression of the sirA gene. The disruption of the sir operon led to a strain with lower viability and decreased resistance to oxidative stress. S. aureus sir null mutant was also analysed during infection of murine macrophages and shown to contribute to S. aureus survival inside macrophages. Altogether, our results indicate that the Sir transport system confers protection against reactive oxygen species, therefore, contributing to the virulence of S. aureus.


Assuntos
Tolerância a Medicamentos , Proteínas de Membrana Transportadoras/metabolismo , Oxidantes/toxicidade , Estresse Oxidativo , Sideróforos/metabolismo , Staphylococcus aureus/fisiologia , Animais , Linhagem Celular , Perfilação da Expressão Gênica , Técnicas de Inativação de Genes , Macrófagos/imunologia , Macrófagos/microbiologia , Proteínas de Membrana Transportadoras/genética , Camundongos , Viabilidade Microbiana/efeitos dos fármacos , Compostos Nitrosos/toxicidade , Staphylococcus aureus/genética
16.
Proc Natl Acad Sci U S A ; 108(1): 97-102, 2011 Jan 04.
Artigo em Inglês | MEDLINE | ID: mdl-21173279

RESUMO

The class II chelatases associated with heme, siroheme, and cobalamin biosynthesis are structurally related enzymes that insert a specific metal ion (Fe(2+) or Co(2+)) into the center of a modified tetrapyrrole (protoporphyrin or sirohydrochlorin). The structures of two related class II enzymes, CbiX(S) from Archaeoglobus fulgidus and CbiK from Salmonella enterica, that are responsible for the insertion of cobalt along the cobalamin biosynthesis pathway are presented in complex with their metallated product. A further structure of a CbiK from Desulfovibrio vulgaris Hildenborough reveals how cobalt is bound at the active site. The crystal structures show that the binding of sirohydrochlorin is distinctly different to porphyrin binding in the protoporphyrin ferrochelatases and provide a molecular overview of the mechanism of chelation. The structures also give insights into the evolution of chelatase form and function. Finally, the structure of a periplasmic form of Desulfovibrio vulgaris Hildenborough CbiK reveals a novel tetrameric arrangement of its subunits that are stabilized by the presence of a heme b cofactor. Whereas retaining colbaltochelatase activity, this protein has acquired a central cavity with the potential to chaperone or transport metals across the periplasmic space, thereby evolving a new use for an ancient protein subunit.


Assuntos
Cobalto/metabolismo , Evolução Molecular , Ferroquelatase/metabolismo , Modelos Moleculares , Família Multigênica/genética , Vitamina B 12/biossíntese , Archaeoglobus fulgidus/enzimologia , Domínio Catalítico/genética , Cristalização , Desulfovibrio vulgaris/enzimologia , Ferroquelatase/genética , Porfirinas/metabolismo , Salmonella enterica/enzimologia , Uroporfirinas/metabolismo
17.
Proc Natl Acad Sci U S A ; 108(45): 18260-5, 2011 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-21969545

RESUMO

Modified tetrapyrroles such as chlorophyll, heme, siroheme, vitamin B(12), coenzyme F(430), and heme d(1) underpin a wide range of essential biological functions in all domains of life, and it is therefore surprising that the syntheses of many of these life pigments remain poorly understood. It is known that the construction of the central molecular framework of modified tetrapyrroles is mediated via a common, core pathway. Herein a further branch of the modified tetrapyrrole biosynthesis pathway is described in denitrifying and sulfate-reducing bacteria as well as the Archaea. This process entails the hijacking of siroheme, the prosthetic group of sulfite and nitrite reductase, and its processing into heme and d(1) heme. The initial step in these transformations involves the decarboxylation of siroheme to give didecarboxysiroheme. For d(1) heme synthesis this intermediate has to undergo the replacement of two propionate side chains with oxygen functionalities and the introduction of a double bond into a further peripheral side chain. For heme synthesis didecarboxysiroheme is converted into Fe-coproporphyrin by oxidative loss of two acetic acid side chains. Fe-coproporphyrin is then transformed into heme by the oxidative decarboxylation of two propionate side chains. The mechanisms of these reactions are discussed and the evolutionary significance of another role for siroheme is examined.


Assuntos
Heme/análogos & derivados , Cromatografia Líquida de Alta Pressão , Heme/síntese química , Heme/química , Heme/metabolismo , Oxigênio/metabolismo
18.
Dalton Trans ; 53(26): 11009-11020, 2024 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-38874948

RESUMO

The toxicity profile of fac-[Re(CO)3(N-N)L]+ complexes against microbial and tumoral cells has been extensively studied, primarily focusing on modifications to the bidentate diimine (N-N) ligand. However, less attention has been paid to modifications of the axial ligand L, which is perpendicular to the Re-N-N plane. This study reveals that the high toxicity of the fac-[Re(CO)3(bpy)(Ctz)]+ complex may be attributed to the structural effect of the trityl (CPh3) group present in clotrimazole, as removal of phenyl rings causes a significant decrease in the activity against Staphylococcus aureus (S. aureus). Moreover, substitution of the 1-tritylimidazole ligand by the structurally related ligands PPh3 and PCy3 maintains similarly high activity levels. These findings contribute to understanding the interactions of toxic complexes with bacterial membranes, suggesting that the ligand structures play a crucial role in inhibiting cell wall synthesis processes, potentially including Lipid II synthesis. Compounds with Ph3E (E = C-imidazole; P) groups also showed to be 10 times more toxic than cisplatin against three mammalian cell lines (IC50: 2-4 µM). In contrast, the analogue 1-benzylimidazole and 1-tert-butylimidazole derivatives were as toxic as cisplatin. We observed that the decomposition of the [Re(I)(CO)3] fragment inside mammalian cell lines liberates CO, which is expected to exert biological effects. Therefore, compounds of this family possessing the structural motif Ph3E seem to combine high antimicrobial and antitumoral activities, the latter being much higher than that of cisplatin.


Assuntos
Antineoplásicos , Monóxido de Carbono , Complexos de Coordenação , Testes de Sensibilidade Microbiana , Rênio , Staphylococcus aureus , Humanos , Antineoplásicos/farmacologia , Antineoplásicos/química , Antineoplásicos/síntese química , Complexos de Coordenação/farmacologia , Complexos de Coordenação/química , Complexos de Coordenação/síntese química , Staphylococcus aureus/efeitos dos fármacos , Monóxido de Carbono/química , Monóxido de Carbono/farmacologia , Rênio/química , Rênio/farmacologia , Antibacterianos/farmacologia , Antibacterianos/química , Antibacterianos/síntese química , Linhagem Celular Tumoral , Estrutura Molecular , Ligantes , Ensaios de Seleção de Medicamentos Antitumorais , Sobrevivência Celular/efeitos dos fármacos , Relação Estrutura-Atividade , Proliferação de Células/efeitos dos fármacos
19.
J Bacteriol ; 195(11): 2684-90, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23564166

RESUMO

Desulfovibrio species are Gram-negative anaerobic sulfate-reducing bacteria that colonize the human gut. Recently, Desulfovibrio spp. have been implicated in gastrointestinal diseases and shown to stimulate the epithelial immune response, leading to increased production of inflammatory cytokines by macrophages. Activated macrophages are key cells of the immune system that impose nitrosative stress during phagocytosis. Hence, we have analyzed the in vitro and in vivo responses of Desulfovibrio vulgaris Hildenborough to nitric oxide (NO) and the role of the hybrid cluster proteins (HCP1 and HCP2) and rubredoxin oxygen oxidoreductases (ROO1 and ROO2) in NO protection. Among the four genes, hcp2 was the gene most highly induced by NO, and the hcp2 transposon mutant exhibited the lowest viability under conditions of NO stress. Studies in murine macrophages revealed that D. vulgaris survives incubation with these phagocytes and triggers NO production at levels similar to those stimulated by the cytokine gamma interferon (IFN-γ). Furthermore, D. vulgaris hcp and roo mutants exhibited reduced viability when incubated with macrophages, revealing that these gene products contribute to the survival of D. vulgaris during macrophage infection.


Assuntos
Proteínas de Bactérias/metabolismo , Desulfovibrio vulgaris/fisiologia , Infecções por Desulfovibrionaceae/microbiologia , Proteínas Ferro-Enxofre/metabolismo , Macrófagos/microbiologia , NADH NADPH Oxirredutases/genética , Óxido Nítrico/metabolismo , Animais , Proteínas de Bactérias/genética , Linhagem Celular , Desulfovibrio vulgaris/efeitos dos fármacos , Desulfovibrio vulgaris/genética , Desulfovibrio vulgaris/crescimento & desenvolvimento , Infecções por Desulfovibrionaceae/imunologia , Regulação Bacteriana da Expressão Gênica , Humanos , Proteínas Ferro-Enxofre/genética , Macrófagos/imunologia , Macrófagos/metabolismo , Camundongos , Testes de Sensibilidade Microbiana , Viabilidade Microbiana , Mutagênese Insercional , NADH NADPH Oxirredutases/metabolismo , Óxido Nítrico/farmacologia , Nitritos/análise , Nitritos/metabolismo , Estresse Oxidativo , Fenótipo , Estresse Fisiológico
20.
Biochem Biophys Res Commun ; 441(4): 732-6, 2013 Nov 29.
Artigo em Inglês | MEDLINE | ID: mdl-24211572

RESUMO

Dissimilatory reduction of sulfite is carried out by the siroheme enzyme DsrAB, with the involvement of the protein DsrC, which has two conserved redox-active cysteines. DsrC was initially believed to be a third subunit of DsrAB. Here, we report a study of the distribution of DsrC in cell extracts to show that, in the model sulfate reducer Desulfovibrio vulgaris, the majority of DsrC is not associated with DsrAB and is thus free to interact with other proteins. In addition, we developed a cysteine-labelling gel-shift assay to monitor the DsrC redox state and behaviour, and procedures to produce the different redox forms. The oxidized state of DsrC with an intramolecular disulfide bond, which is proposed to be a key metabolic intermediate, could be successfully produced for the first time by treatment with arginine.


Assuntos
Proteínas de Bactérias/metabolismo , Desulfovibrio vulgaris/enzimologia , Sulfito Redutase (NADPH)/metabolismo , Sulfitos/metabolismo , Proteínas de Bactérias/química , Oxirredução , Sulfito Redutase (NADPH)/química
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