Detalhe da pesquisa
1.
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages.
Cell
; 184(20): 5189-5200.e7, 2021 09 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-34537136
2.
Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy.
BMC Bioinformatics
; 24(1): 263, 2023 Jun 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-37353753
3.
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
Mol Biol Evol
; 39(4)2022 04 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-35325204
4.
Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril.
Mol Biol Evol
; 37(8): 2430-2439, 2020 08 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32068869
5.
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Mol Biol Evol
; 37(1): 295-299, 2020 Jan 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31504749
6.
Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates.
BMC Evol Biol
; 20(1): 24, 2020 02 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-32046633
7.
Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes.
Mol Biol Evol
; 35(3): 773-777, 2018 Mar 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29301006
8.
phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics.
BMC Bioinformatics
; 19(1): 276, 2018 07 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-30045713
9.
The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates.
J Mol Evol
; 85(1-2): 46-56, 2017 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-28795237
10.
Natural selection differences detected in key protein domains between non-pathogenic and pathogenic Feline Coronavirus phenotypes.
bioRxiv
; 2023 Jan 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-36712007
11.
Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes.
Virus Evol
; 9(1): vead019, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37038392
12.
RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis.
bioRxiv
; 2022 Jan 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35075458
13.
RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis.
PLoS One
; 17(11): e0275623, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-36322581
14.
Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City.
Nat Commun
; 13(1): 3645, 2022 06 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-35752633
15.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
bioRxiv
; 2022 Jan 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35075456
16.
Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes.
PLoS One
; 16(3): e0248337, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-33711070
17.
The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape.
medRxiv
; 2021 Jul 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-33688681
18.
Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host.
Virus Evol
; 6(1): veaa005, 2020 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-32355568
19.
Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces.
Methods Mol Biol
; 1910: 427-468, 2019.
Artigo
em Inglês
| MEDLINE | ID: mdl-31278673