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The emergence of plant pathogens is often associated with waves of unique evolutionary and epidemiological events. Xanthomonas hortorum pv. gardneri is one of the major pathogens causing bacterial spot disease of tomatoes. After its first report in the 1950s, there were no formal reports on this pathogen until the 1990s, despite active global research on the pathogens that cause tomato and pepper bacterial spot disease. Given the recently documented global distribution of X. hortorum pv. gardneri, our objective was to examine genomic diversification associated with its emergence. We sequenced the genomes of X. hortorum pv. gardneri strains collected in eight countries to examine global population structure and pathways of emergence using phylodynamic analysis. We found that strains isolated post-1990 group by region of collection and show minimal impact of recombination on genetic variation. A period of rapid geographic expansion in X. hortorum pv. gardneri is associated with acquisition of a large plasmid conferring copper tolerance by horizontal transfer and coincides with the burgeoning hybrid tomato seed industry through the 1980s. The ancestry of X. hortorum pv. gardneri is consistent with introduction to hybrid tomato seed production and dissemination during the rapid increase in trade of hybrid seeds.
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While links between soil and plant health are implied, there are few opportunities to empirically evaluate this due to inherent differences among sites. An exception is a long-term experiment established in 2007 (repeated in 2008) in Ridgetown, ON, where improved soil health scores and changes in soil microbial communities were observed in the medium-term with annual cover crops (CC). This led us to hypothesize that CC-induced changes in soil health might affect bacterial spot (Xanthomonas hordorum pv. gardneri) and anthracnose (Colletotrichum coccodes) development in processing tomato. Five CC treatments (no CC control, winter cereal rye, oat, radish, and mix of radish + rye) planted after winter wheat harvest were evaluated in 2019 and 2020 (CC grown nine times over 12 years). Fruit yields and net revenue were similar or greater with CC than without. In 2019, there was greater defoliation (area under the disease progress stairs = 4,370 ± 204), percent red fruit (71.0% ± 5.38), and rots (1.91% ± 0.5) in no CC than with radish (3,410, 39.1%, and 0.62%, respectively, P ≤ 0.0366), indicating earlier fruit maturity in no CC plots. Similarly, no CC had a greater incidence of red fruits with anthracnose (25.8% ± 2.89) compared with all CCs but rye (7.4 to 12.1% ± 2.89; P = 0.0029). Environmental conditions in 2020 were less favourable for disease development. Defoliation was not affected by CC treatment (P = 0.1254), and anthracnose incidence was low (≥90.3 ± 1.22% healthy fruit), which may have limited the ability to detect treatment effects (P = 0.2922). Long-term cover crops have the potential to produce greater or equivalent tomato yield with decreased defoliation and anthracnose fruit rot.
Assuntos
Solanum lycopersicum , Frutas/microbiologia , Estações do Ano , Solo , Produtos AgrícolasRESUMO
Quantitative PCR (qPCR), loop-mediated amplification (LAMP), and lateral flow strip-based recombinase polymerase amplification (RPA-LFS) assays were assessed for early detection of Phytophthora infestans, the global causal agent of potato and tomato late blight, on passive wind-powered spore traps known as Spornados. Spore traps were deployed in potato and tomato fields during the 2018, 2019, and 2020 growing seasons in the provinces of Alberta, British Columbia, Manitoba, Prince Edward Island, and Ontario. All assays used DNA extracts from Spornado cassette membranes targeting the P. infestans nuclear ribosomal internal transcribed spacer. A total of 1,003 Spornado samples were qPCR tested, yielding 115 positive samples for P. infestans spores. In further assessment of these samples, LAMP detected P. infestans in 108 (93.9%) of 115 qPCR positive samples, and RPA-LFS detected it in 103 (89.6%). None of the assays showed cross-reaction with other Phytophthora species or pathogenic fungi known to infect potato and tomato. The qPCR detected ≤1 fg of P. infestans DNA, and LAMP and RPA-LFS amplified 10 fg in as little as 10 min. All assays detected P. infestans before the first report of late blight symptoms in commercial potato or tomato fields within each region or province. The combination of Spornado passive samplers with qPCR, LAMP, or RPA-LFS proved a valuable spore trapping system for early surveillance of late blight in potato and tomato. Both LAMP and RPA-LFS showed potential as alternative approaches to qPCR for in-field monitoring of P. infestans.
Assuntos
Phytophthora infestans , Solanum lycopersicum , Solanum tuberosum , Alberta , DNA , Phytophthora infestans/genética , Esporos , VentoRESUMO
Much of cover crop research to date focuses on key indicators of impact without considering the implications over multiple years, in the absence of a systems-based approach. To evaluate the effect of three years of autumn cover crops on subsequent processing tomato (Solanum lycopersicum L.) production in 2010 and 2011, a field split-split-plot factorial design trial with effects of cover crop type, urea ammonium nitrate fertilizer rate (0 or 140 kg N ha-1 preplant broadcast incorporated) and tomato cultivar (early vs. late) was conducted. The main plot factor, cover crop, included a no cover crop control, oat (Avena sativa L.), winter cereal rye (hereafter referred to as rye) (Secale cereale L.), oilseed radish (OSR) (Raphanus sativus L. var. oleiferus Metzg Stokes), and mix of OSR and rye (OSR + rye) treatments. Cover crop biomass of 0.5 to 2.8 and 1.7 to 3.1 Mg ha-1 was attained in early Oct. and the following early May, respectively. In general, OSR increased soil mineral N during cover crop growth and into the succeeding summer tomato growing season, while the remaining cover crops did not differ from the no cover crop control. The lack of a cover crop by N rate interaction in soil and plant N analyses at harvest suggests that growers may not need to modify N fertilizer rates to tomatoes based on cover crop type. Processing tomato fruit quality at harvest (rots, insect or disease damage, Agtron colour, pH, or natural tomato soluble solids (NTSS)) was not affected by cover crop type. In both years, marketable yield in the no cover crop treatment was lower or not statistically different than all planted cover crops. Partial profit margins over both years were 1320 $ ha-1 higher with OSR and $960 higher with oat compared to the no cover crop control. Thus, results from a systems-based approach suggest that the cover crops tested had no observed negative impact on processing tomato production and have the potential to increase marketable yield and profit margins.