Estimation of total genetic effects for survival time in crossbred laying hens showing cannibalism, using pedigree or genomic information.

Mortality of laying hens due to cannibalism is a major problem in the egg-laying industry. Survival depends on two genetic effects: the direct genetic effect of the individual itself (DGE) and the indirect genetic effects of its group mates (IGE). For hens housed in sire-family groups, DGE and IGE cannot be estimated using pedigree information, but the combined effect of DGE and IGE is estimated in the total breeding value (TBV). Genomic information provides information on actual genetic relationships between individuals and might be a tool to improve TBV accuracy. We investigated whether genomic information of the sire increased TBV accuracy compared with pedigree information, and we estimated genetic parameters for survival time. A sire model with pedigree information (BLUP) and a sire model with genomic information (ssGBLUP) were used. We used survival time records of 7290 crossbred offspring with intact beaks from four crosses. Cross-validation was used to compare the models. Using ssGBLUP did not improve TBV accuracy compared with BLUP which is probably due to the limited number of sires available per cross (~50). Genetic parameter estimates were similar for BLUP and ssGBLUP. For both BLUP and ssGBLUP, total heritable variance (T2 ), expressed as a proportion of phenotypic variance, ranged from 0.03 ± 0.04 to 0.25 ± 0.09. Further research is needed on breeding value estimation for socially affected traits measured on individuals kept in single-family groups.

Accuracy of genomic prediction using imputed whole-genome sequence data in white layers.

There is an increasing interest in using whole-genome sequence data in genomic selection breeding programmes. Prediction of breeding values is expected to be more accurate when whole-genome sequence is used, because the causal mutations are assumed to be in the data. We performed genomic prediction for the number of eggs in white layers using imputed whole-genome resequence data including ~4.6 million SNPs. The prediction accuracies based on sequence data were compared with the accuracies from the 60 K SNP panel. Predictions were based on genomic best linear unbiased prediction (GBLUP) as well as a Bayesian variable selection model (BayesC). Moreover, the prediction accuracy from using different types of variants (synonymous, non-synonymous and non-coding SNPs) was evaluated. Genomic prediction using the 60 K SNP panel resulted in a prediction accuracy of 0.74 when GBLUP was applied. With sequence data, there was a small increase (~1%) in prediction accuracy over the 60 K genotypes. With both 60 K SNP panel and sequence data, GBLUP slightly outperformed BayesC in predicting the breeding values. Selection of SNPs more likely to affect the phenotype (i.e. non-synonymous SNPs) did not improve the accuracy of genomic prediction. The fact that sequence data were based on imputation from a small number of sequenced animals may have limited the potential to improve the prediction accuracy. A small reference population (n = 1004) and possible exclusion of many causal SNPs during quality control can be other possible reasons for limited benefit of sequence data. We expect, however, that the limited improvement is because the 60 K SNP panel was already sufficiently dense to accurately determine the relationships between animals in our data.

Systematic differences in the response of genetic variation to pedigree and genome-based selection methods.

Genomic selection (GS) is a DNA-based method of selecting for quantitative traits in animal and plant breeding, and offers a potentially superior alternative to traditional breeding methods that rely on pedigree and phenotype information. Using a 60 K SNP chip with markers spaced throughout the entire chicken genome, we compared the impact of GS and traditional BLUP (best linear unbiased prediction) selection methods applied side-by-side in three different lines of egg-laying chickens. Differences were demonstrated between methods, both at the level and genomic distribution of allele frequency changes. In all three lines, the average allele frequency changes were larger with GS, 0.056 0.064 and 0.066, compared with BLUP, 0.044, 0.045 and 0.036 for lines B1, B2 and W1, respectively. With BLUP, 35 selected regions (empirical P < 0.05) were identified across the three lines. With GS, 70 selected regions were identified. Empirical thresholds for local allele frequency changes were determined from gene dropping, and differed considerably between GS (0.167-0.198) and BLUP (0.105-0.126). Between lines, the genomic regions with large changes in allele frequencies showed limited overlap. Our results show that GS applies selection pressure much more locally than BLUP, resulting in larger allele frequency changes. With these results, novel insights into the nature of selection on quantitative traits have been gained and important questions regarding the long-term impact of GS are raised. The rapid changes to a part of the genetic architecture, while another part may not be selected, at least in the short term, require careful consideration, especially when selection occurs before phenotypes are observed.

Prediction of heterosis using genome-wide SNP-marker data: application to egg production traits in white Leghorn crosses.

Prediction of heterosis has a long history with mixed success, partly due to low numbers of genetic markers and/or small data sets. We investigated the prediction of heterosis for egg number, egg weight and survival days in domestic white Leghorns, using ∼400 000 individuals from 47 crosses and allele frequencies on ∼53 000 genome-wide single nucleotide polymorphisms (SNPs). When heterosis is due to dominance, and dominance effects are independent of allele frequencies, heterosis is proportional to the squared difference in allele frequency (SDAF) between parental pure lines (not necessarily homozygous). Under these assumptions, a linear model including regression on SDAF partitions crossbred phenotypes into pure-line values and heterosis, even without pure-line phenotypes. We therefore used models where phenotypes of crossbreds were regressed on the SDAF between parental lines. Accuracy of prediction was determined using leave-one-out cross-validation. SDAF predicted heterosis for egg number and weight with an accuracy of ∼0.5, but did not predict heterosis for survival days. Heterosis predictions allowed preselection of pure lines before field-testing, saving ∼50% of field-testing cost with only 4% loss in heterosis. Accuracies from cross-validation were lower than from the model-fit, suggesting that accuracies previously reported in literature are overestimated. Cross-validation also indicated that dominance cannot fully explain heterosis. Nevertheless, the dominance model had considerable accuracy, clearly greater than that of a general/specific combining ability model. This work also showed that heterosis can be modelled even when pure-line phenotypes are unavailable. We concluded that SDAF is a useful predictor of heterosis in commercial layer breeding.

Risk factors for hamstring injuries in male soccer players: a systematic review of prospective studies.

Hamstring injuries are common injuries in soccer players. In view of the high incidence and the serious consequences, identifying risk factors related to hamstring injuries is essential. The aim of this systematic review was therefore to identify risk factors for hamstring injuries in male adult soccer players. PubMed, Embase/Medline, Cumulative Index to Nursing and Allied Health Literature, and SPORTDiscus were systematically searched, and prospective studies investigating risk factors for hamstring injuries in adult male soccer players were included. The methodological quality of the included articles was assessed using a standardized set of predefined criteria. Seven of the 11 studies identified, involving a total of 1775 players and 344 hamstring injuries, met the inclusion criteria. All but one of the included studies met at least five of nine methodological criteria, causing them to be qualified as 'high quality'. The included studies used univariate as well as multivariate analyses to identify risk factors for hamstring injury. The results from the multivariate analyses suggest that previous hamstring injury is most strongly related to hamstring injury. Conflicting evidence is found for age and hamstring length or flexibility as risk factors for the occurrence of hamstring injuries.

Genetic correlation between heart ratio and body weight as a function of ascites frequency in broilers split up into sex and health status.

Ascites or pulmonary hypertension syndrome is a metabolic disorder in broilers. Male broilers have a higher BW and are therefore expected to be more prone to developing ascites than females. As genetic parameters might be affected by the ascites incidence, genetic parameters might differ between male and female broilers. The aims of this study were to estimate the heritability for the ratio of right ventricular weight to total ventricular weight (RATIO) and BW in male and female broilers, the genetic correlation between RATIO and BW separately for male and female broilers, and the genetic correlations between BW for ascitic and nonascitic broilers. Data were available from 7,856 broilers (3,819 males and 4,037 females). The broilers in the experiment were kept under a cold temperature regimen and increased CO(2) levels. In this study, we showed that the incidence of ascites is higher in male than in female broilers. Heritability estimates for BW at 7 wk of age were higher for male (0.22) than for female (0.17) broilers, and for RATIO heritability, estimates were higher for female (0.44) than for male (0.32) broilers. The genetic correlations between RATIO and BW measured at different ages changed from slightly positive at 2 wk of age to moderately negative at 7 wk. The change in genetic correlation was more extreme for male (from 0.01 to -0.62) than for female (from 0.13 to -0.24) broilers. The difference in ascites incidence between male and female broilers is the most likely reason for the difference in genetic correlations. The genetic correlation between BW traits measured in broilers with fluid in the abdomen and without fluid in the abdomen decreased from 0.91 at 2 wk to 0.69 at 7 wk. We conclude that under circumstances with ascites, data from male and female broilers should be analyzed separately.

Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds.

As all four meiotic products give rise to sperm in males, female meiosis result in a single egg in most eukaryotes. Any genetic element with the potential to influence chromosome segregation, so that it is preferentially included in the egg, should therefore gain a transmission advantage; a process termed female meiotic drive. We are aware of two chromosomal components, centromeres and telomeres, which share the potential to influence chromosome movement during meioses and make the following predictions based on the presence of female meiotic drive: (1) centromere-binding proteins should experience rapid evolution as a result of a conflict between driving centromeres and the rest of the genome; and (2) segregation patterns should be skewed near centromeres and telomeres. To test these predictions, we first analyze the molecular evolution of seven centromere-binding proteins in nine divergent bird species. We find strong evidence for positive selection in two genes, lending support to the genomic conflict hypothesis. Then, to directly test for the presence of segregation distortion, we also investigate the transmission of approximately 9000 single-nucleotide polymorphisms in 197 chicken families. By simulating fair Mendelian meioses, we locate chromosomal regions with statistically significant transmission ratio distortion. One region is located near the centromere on chromosome 1 and a second region is located near the telomere on the p-arm of chromosome 1. Although these observations do not provide conclusive evidence in favour of the meiotic drive/genome conflict hypothesis, they do lend support to the hypothesis that centromeres and telomeres drive during female meioses in chicken.

The use of blood gas parameters to predict ascites susceptibility in juvenile broilers.

Ascites syndrome is a metabolic disorder found in modern broilers that have insufficient pulmonary vascular capacity. Commercial breeding programs have heavily focused on high growth rate, which led to fast-growing chickens, but as a negative consequence, the incidence of ascites syndrome increased. However, not all birds with a high growth rate will suffer from ascites syndrome, which might indicate a genetic susceptibility to ascites. Information on blood gas parameters measured early in life and their relation to ascites susceptibility is expected to contribute to identification on the cause of ascites syndrome. In this study, several physiological parameters, such as blood gas parameters [pH, partial pressure of CO(2) in venous blood (pvCO(2)), and partial pressure of O(2) in venous blood], hematocrit, electrolytes (Na(+), Ca(2+), and K(+)), metabolites (lactate and glucose), were measured at d 11 to 12 of age from 100 female and 100 male broilers. From d 14 onward, the birds were challenged to provoke the development of ascites syndrome. Our results showed that high pvCO(2) values together with low pH values (males) or high pH values (females) in the venous blood of juvenile broilers coincided with ascites. Therefore, blood pvCO(2) and pH in both juvenile male and female broilers seem to be critical factors in ascites pathophysiology and can be used as phenotypic traits to predict ascites susceptibility in juvenile broilers at d 11 to 12. A prediction model was built on a subpopulation of the broilers without any loss in sensitivity (0.52) and specificity (0.78) when applied to the validation population. The parameter sex was included in the prediction model because levels of pvCO(2) and pH that associated with ascites susceptibility are different between males and females. Commercial breeders can include these phenotypic traits in their genetic selection programs to reduce the incidence of ascites syndrome.

Genetic and phenotypic relationships between blood gas parameters and ascites-related traits in broilers.

Ascites, also called pulmonary hypertension syndrome, is a metabolic disorder in chickens that have an insufficient pulmonary vascular capacity. The tendency of broilers to develop ascites is heritable, and successful selection against this susceptibility would benefit from good and easy-to-measure indicator traits. Blood gas parameters have been suggested as indicator traits for ascites susceptibility. Therefore, the aim of the present study was to estimate the heritability of blood gas parameters and the genetic and phenotypic correlations between blood gas parameters, heart ratio (postmortem indicator for ascites), and BW at 2 different ages. For this purpose, blood gas parameters, including the partial pressure of carbon dioxide in venous blood (pvCO(2)), the partial pressure of oxygen in venous blood (pvO(2)), and blood oxygen saturation, were measured at an average age of 22 d in nearly 3,000 broilers. To challenge the resistance of the birds to ascites, they were kept under cold conditions. Heritability for heart ratio was 0.43, and the heritability estimates were low: 0.02 for pvCO(2), 0.03 for pvO(2), and 0.07 for blood oxygen saturation. The estimated heritability for pH was 0.15, for bicarbonate was 0.19, and for total carbon dioxide content was 0.19. The genetic correlations between heart ratio and total carbon dioxide content (0.31 +/- 0.15) and between heart ratio and bicarbonate (0.31 +/- 0.15) were moderate and positive. For pvO(2), the genetic correlation with heart ratio was stronger and negative (-0.62 +/- 0.21); however, this correlation could not be estimated accurately because of the low heritability of pvO(2). For pvCO(2), the genetic correlation with the heart ratio was close to zero (-0.04 +/- 0.45). Phenotypic correlations between traits were, in general, similar to the genetic correlations. Heritabilities for blood gas parameters and the genetic correlations between blood gas parameters and the heart ratio estimated in the present study do not support the suggestion that blood gas parameters measured during wk 3 or 4 are useful traits to select against the susceptibility for ascites.

Effect of age and housing system on genetic parameters for broiler carcass traits.

The effect of age and housing system on genetic parameters for BW and carcass traits was investigated. Traits were measured on broilers of different ages (48, 63, and 70 d). Birds in the 48 and 70 d groups were raised in group housing, whereas birds in the 63 d group were raised in the same housing up to 22 d and in individual cages between 22 and 63 d. Each group consisted of approximately 2,000 individuals from a single group of parents. Carcass, breast meat, abdominal fat, and back half were expressed as percentage of BW. The heritabilities of BW at 48, 63, and 70 d were 0.31, 0.26, and 0.19, respectively, and the heritabilities of back half percentage at 48, 63, and 70 d were 0.42, 0.38, and 0.21, respectively. For other carcass traits, heritabilities were in the same range in different age groups. A positive genetic correlation was found between BW and valuable parts of carcass (breast meat and back half) at 48 d; these relationships were negative at 70 d. The genetic correlation between BW and abdominal fat percentage at 70 d was higher than at 48 d. The increase in growth at 48 d was accompanied by increase in valuable parts; at 70 d it was accompanied by an increase in abdominal fat percentage. The genetic correlation of BW at 48 d between individual cage and group housing demonstrated a genotype by environment interaction for performance of birds, which has consequences for design of breeding schemes.

Broiler breeding strategies using indirect carcass measurements.

The objective of the current study was to determine the consequences of using indirect carcass measurements on the genetic response and rate of inbreeding in broiler breeding programs. In the base breeding scheme, selection candidates were evaluated based on direct carcass measurements on relatives. The possibilities of using indirect carcass measurements were investigated in alternative breeding schemes. Three alternative schemes, including indirect and own performance information for carcass traits on selection candidates, were evaluated by deterministic simulation. In the first scheme, indirect carcass traits were measured on male selection candidates. In the second scheme, indirect carcass traits were measured on male selection candidates, and direct carcass traits were measured on relatives. In the third scheme, indirect carcass traits were measured on male and female selection candidates, and direct carcass traits were measured on relatives. In the base scheme, the genetic response for breast muscle percentage (BMP) was 0.3%, and the rate of inbreeding was 0.96% per generation. In the third alternative scheme, the response for BMP increased by 66.2% compared with the base scheme, and the rate of inbreeding decreased to 0.79% per generation. The improved genetic gain resulted from increased accuracy of selection. The use of own performance information for selection candidates reduced the rate of inbreeding in alternative schemes, which is desirable for long-term selection. The accuracy of the indirect carcass measurements had consequences on the response for BMP and the rate of inbreeding. In most cases, an accuracy of 30% was sufficient to result in a higher gain for BMP and a lower rate of inbreeding as compared with the base scheme.

Art meets science: The Cosmopolitan Chicken Research Project.

The Cosmopolitan Chicken Project is an artistic undertaking of renowned artist Koen Vanmechelen. In this project, the artist interbreeds domestic chickens from different countries aiming at the creation of a true Cosmopolitan Chicken as a symbol for global diversity. The unifying theme is the chicken and the egg, symbols that link scientific, political, philosophical and ethical issues. The Cosmopolitan Chicken Research Project is the scientific component of this artwork. Based on state of the art genomic techniques, the project studies the effect of the crossing of chickens on the genetic diversity. Also, this research is potentially applicable to the human population. The setup of the CC®P is quite different from traditional breeding experiments: starting from the crossbreed of two purebred chickens (Mechelse Koekoek x Poule de Bresse), every generation is crossed with a few animals from another breed. For 26 of these purebred and crossbred populations, genetic diversity was measured (1) under the assumption that populations were sufficiently large to maintain all informative SNP within a generation and (2) under the circumstances of the CCP breeding experiment. Under the first assumption, a steady increase in genetic diversity was witnessed over the consecutive generations, thus indeed indicating the creation of a "Cosmopolitan Chicken Genome". However, under the conditions of the CCP, which reflects the reality within the human population, diversity is seen to fluctuate within given boundaries instead of steadily increasing. A reflection on this might be that this is because, in humans, an evolutionary optimum in genetic diversity is reached. Key words.

Disease-induced variability of genetic correlations: ascites in broilers as a case study.

Breeding against a production disease is complicated by multiple relationships between productivity, disease, and environment. Ascites in broilers is such a disease. The combination of the reasonably well understood etiology (a physiological/pathological cascade due to inadequate oxygen supply) and the practical relevance makes ascites a relevant case for demonstrating and partly revealing these complex relationships. Chickens (n = 2,788) were tested in an ascites-challenging (cold) environment. Genetic analysis of mortality and pathology in combination with performance and physiological traits (especially blood gas traits) revealed ample opportunities for selection against ascites expression. The genetic correlation structure indicated that different mortality traits and pathology traits roughly represent one common characteristic. Direct selection against pathology is more effective than selection on the basis of growth or blood gas traits. The observed negative correlation (-0.26) between productivity and ascites was unexpected. From the etiology of ascites (inadequate supply of oxygen relative to the demand), a positive (unfavorable) correlation was expected. To demonstrate that the actual disease occurrence caused this apparent contradiction, the data from the undiseased subpopulation were reanalyzed. In the undiseased subpopulation, the genetic correlation between productivity and ascites was positive (0.29). This discrepancy was confirmed by comparing regression of ascites expression on actual performance with regression of ascites on independently assessed performance breeding values. The lability of the genetic correlation was explained from complex interactions between productivity, disease susceptibility, and actual occurrence of the disease. The revealed mechanism can be generalized to other production-related diseases and results in systematically lower genetic correlations between disease and productivity. It was inferred that genetic correlations between productivity and such diseases will always be prone to the demonstrated environmental sensitivity, which complicates index selection against production-related diseases.

A deterministic model for the economic evaluation of broiler production systems.

A deterministic model for the economic evaluation of broiler production and the derivation of economic values in broiler breeding was developed and tested. The model distinguishes four production stages: multiplier breeder, hatchery, commercial grower, and processor. The processor is included to determine relationships for the price per kilogram of live weight and the quality of the carcass, either on a "whole sale" or "further processed" base. Quantity of product output for the system is fixed by a predetermined amount of kilogram carcass of final product broilers finished by the commercial grower. Profitability of production and cost prices per unit product for subsequent stages can be calculated. Exogenous parameters are easily changeable in order to calculate profitability and cost prices for different production levels or production circumstances. Economic values can be derived considering influences of changes in genetic merit for performance traits on profitability or cost price, for integrated and nonintegrated production systems. By changing exogenous parameters, the model can also be used to analyze profitability or derive economic values for other meat-type poultry, such as turkey.

Estimation of genetic parameters for fat deposition and carcass traits in broilers.

Abdominal and subcutaneous fat are regarded as the main sources of waste in the slaughterhouse. Fat stored intramuscularly is regarded a favorite trait related to meat quality. The objective of current study was to estimate genetic parameters for fat deposition in the 3 different parts of body and their relationships with other carcass traits. Traits were recorded for 1,752 females and 1,526 males from a meat-type chicken line. Heritability estimates for abdominal fat percentage, skin percentage as a measure of subcutaneous fat, and intramuscular fat percentage were 0.71, 0.24, and 0.08, respectively. Heritabilities of the other carcass traits were moderate to high (0.28 to 0.73). There was a high genetic correlation between abdominal fat weight and skin weight (0.54), whereas the genetic correlation between abdominal fat weight and intramuscular fat percentage was almost zero (0.02). The BW at 7 wk showed a positive genetic correlation with fat production traits, which were high for intramuscular fat percentage (0.87) and moderate for skin percentage (0.17) and abdominal fat percentage (0.13). Therefore carcass traits could be improved by selection for increased breast muscle and reduced abdominal fat without decreased intramuscular fat.

Detection of genes on the Z-chromosome affecting growth and feathering in broilers.

Detection of genes located on the Z-chromosome differs from the detection of genes located on autosomal chromosomes. In the present study, the chicken Z-chromosome is scanned for genes affecting growth traits and feathering. For this purpose, data from a three-generation full-sib-half-sib design was available: parents, full-sib offspring, and half-sib grandoffspring. The parents and full-sib offspring were genotyped for 17 markers on the Z-chromosome. Phenotypic data were only available for grandoffspring. Only the segregation of male chromosomes provides information on the presence of genes, and therefore, a half-sib interval mapping approach was used. The feathering gene was detected significantly and was located between markers ADL0022 and MCW0331. No significant indications were found for the presence of quantitative trait loci affecting growth traits on the Z-chromosome.

Direct and maternal genetic effects for ascites-related traits in broilers.

The objective of the present study was to estimate heritabilities for ascites-related traits in broilers and to assess the importance of maternal genetic effects for these traits. Several traits related to ascites were measured on more than 4,000 broilers kept under cold conditions. Heritabilities were estimated using an animal model with a direct genetic effect and a model with direct and maternal genetic effects. Estimated heritabilities from the direct genetic effects model were 0.46 for hematocrit value, 0.42 for BW, 0.47 for right ventricular weight, 0.46 for total ventricular weight, 0.45 for ratio of right ventricular weight to the total ventricular weight, 0.32 for total mortality, and 0.18 for fluid accumulation in the heart sac. Maternal effects significantly influenced the traits BW, total ventricular weight, and total mortality. Direct and maternal heritabilities, respectively, for BW were 0.21 and 0.04, for total ventricular weights were 0.29 and 0.03, and for total mortality were 0.16 and 0.05. The heritability estimates for ascites-related traits and the significance of maternal genetic effects for most of these traits indicate that direct and maternal genetic effects play an important role in the development of the ascites syndrome.

Whole genome scan in chickens for quantitative trait loci affecting growth and feed efficiency.

A feed efficiency experiment was conducted in a population consisting of progeny from 10 full sib families of a cross between two broiler lines. Microsatellite genotypes were determined on Generation (G) 1 and 2. In G3, BW at 23 and 48 d and feed intake were measured and were used to calculate growth between 23 and 48 d, feed intake adjusted for BW, and feed efficiency. Average adjusted progeny trait values were calculated for G2 animals after adjusting phenotypic observations on offspring for fixed effects, covariables, maternal genetic effects, the additive genetic contribution of the mate, and heterogeneity between sexes and were used as dependent variable in the quantitative trait loci (QTL) analysis. A full sib interval mapping approach was applied using genotypes from 420 markers on 27 autosomal linkage groups. Four QTL exceeded significance thresholds. The most significant QTL was located on Chromosome 1 at 235 cM and had a 4% genomewise significance for feed intake between 23 and 48 d. Furthermore, this QTL exceeded suggestive linkage for growth between 23 and 48 d and BW at 48 d. A second QTL was located on linkage group WAU26 at 16 cM and showed suggestive linkage for feed intake between 23 and 48 d. On Chromosome 4, at 147 cM a third QTL, which had an effect on both feed intake traits, was found. Finally, a fourth QTL, which affected feed intake adjusted for BW, was located on Chromosome 2 at 41 cM.

Whole genome scan in chickens for quantitative trait loci affecting carcass traits.

An experiment was conducted to enable quantitative trait loci (QTL) mapping for carcass traits. The population consisted of 10 full-sib families originating from a cross between male and female founders chosen from two different outcross broiler lines. Founder animals, parents, offspring, and grandoffspring are denoted as generation (G) 0, 1, 2, and 3 animals, respectively. Microsatellite marker genotypes were collected on G1 and G2 animals. Phenotypic observations were collected on G3 animals. Recorded traits were BW at 48 d, carcass weight, carcass percentage, breast meat color, and leg score. Average adjusted progeny trait values were calculated for each G2 animal and for each trait after adjusting phenotypic observations on G3 animals for fixed effects, covariables, the additive genetic contribution of the other parent, and differences between sexes. The average adjusted progeny trait values were used as the dependent variable in the QTL analysis. A QTL analysis was undertaken by modeling the segregation from G1 to G2, using a full-sib across family regression interval mapping approach. In total, 27 autosomal linkage groups covered with 420 markers were analyzed. Genomewise significance thresholds were derived using the permutation test and a Bonferroni correction. Two QTL, affecting two of the five analyzed traits, exceeded suggestive linkage. The most significant QTL was located on Chromosome 1 at 466 cM and showed an effect on carcass percentage. The other QTL, which affected meat color, was located on Chromosome 2 and gave a peak at 345 and 369 cM.

Detection and localization of quantitative trait loci affecting fatness in broilers.

A cross between 2 genetically different outcross broiler dam lines, originating from the White Plymouth Rock breed, was used to produce a large 3-generation broiler population. This population was used to detect and localize QTL affecting fatness in chicken. Twenty full-sib birds in generation 1 and 456 full-sib birds in generation 2 were typed for microsatellite markers, and phenotypic observations were collected for 3 groups of generation 3 birds (approximately 1,800 birds per group). Body weight, abdominal fat weight, and percentage abdominal fat was recorded at the age of 7, 9, and 10 wk. To study the presence of QTL, an across-family weighted regression interval mapping approach was used in a full-sib QTL analysis. Genotypes from 410 markers mapped on 25 chromosomes were available. For the 3 traits, 26 QTL were found for 18 regions on 12 chromosomes. Two genomewise significant QTL (P < 0.05) were detected, one for percentage abdominal fat at the age of 10 wk on chicken chromosome 1 at 241 cM (MCW0058 to MCW0101) with a test statistic of 2.75 and the other for BW at the age of 10 wk on chicken chromosome 13 at 9 cM (MCW0322 to MCW0110) with a test statistic of 2.77. Significance levels were obtained using the permutation test. Multiple suggestive QTL were found on chromosomes 1, 2, 4, 13, 15, and 18, whereas chromosomes 3, 7, 10, 11, 14, and 27 had a single suggestive QTL.