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1.
Int J Mol Sci ; 24(11)2023 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-37298671

RESUMO

Protein-based biostimulants (PBBs) have a positive effect on plant development, although the biological background for this effect is not well understood. Here, hydrolyzed wheat gluten (HWG) and potato protein film (PF) in two levels (1 and 2 g/kg soil) and in two different soils (low and high nutrient; LNC and HNC) were used as PBBs. The effect of these PBBs on agronomic traits, sugars, protein, and peptides, as well as metabolic processes, were evaluated on sugar beet in comparison with no treatment (control) and treatment with nutrient solution (NS). The results showed a significant growth enhancement of the plants using HWG and PF across the two soils. Sucrose and total sugar content in the roots were high in NS-treated plants and correlated to root growth in HNC soil. Traits related to protein composition, including nitrogen, peptide, and RuBisCO contents, were enhanced in PBB-treated plants (mostly for HWG and PF at 2 g/kg soil) by 100% and >250% in HNC and LNC, respectively, compared to control. The transcriptomic analysis revealed that genes associated with ribosomes and photosynthesis were upregulated in the leaf samples of plants treated with either HWG or PP compared to the control. Furthermore, genes associated with the biosynthesis of secondary metabolites were largely down-regulated in root samples of HWG or PF-treated plants. Thus, the PBBs enhanced protein-related traits in the plants through a higher transcription rate of genes related to protein- and photosynthesis, which resulted in increased plant growth, especially when added in certain amounts (2 g/kg soil). However, sucrose accumulation in the roots of sugar beet seemed to be related to the easy availability of nitrogen.


Assuntos
Beta vulgaris , Beta vulgaris/metabolismo , Nitrogênio/metabolismo , Desenvolvimento Vegetal , Solo , Sacarose/metabolismo , Raízes de Plantas/metabolismo
2.
Planta ; 255(1): 20, 2021 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-34894286

RESUMO

MAIN CONCLUSION: Droughts negatively affect sorghum's productivity and nutritional quality. Across its diversity centers, however, there exist resilient genotypes that function differently under drought stress at various levels, including molecular and physiological. Sorghum is an economically important and a staple food crop for over half a billion people in developing countries, mostly in arid and semi-arid regions where drought stress is a major limiting factor. Although sorghum is generally considered tolerant, drought stress still significantly hampers its productivity and nutritional quality across its major cultivation areas. Hence, understanding both the effects of the stress and plant response is indispensable for improving drought tolerance of the crop. This review aimed at enhancing our understanding and provide more insights on drought tolerance in sorghum as a contribution to the development of climate resilient sorghum cultivars. We summarized findings on the effects of drought on the growth and development of sorghum including osmotic potential that impedes germination process and embryonic structures, photosynthetic rates, and imbalance in source-sink relations that in turn affect seed filling often manifested in the form of substantial reduction in grain yield and quality. Mechanisms of sorghum response to drought-stress involving morphological, physiological, and molecular alterations are presented. We highlighted the current understanding about the genetic basis of drought tolerance in sorghum, which is important for maximizing utilization of its germplasm for development of improved cultivars. Furthermore, we discussed interactions of drought with other abiotic stresses and biotic factors, which may increase the vulnerability of the crop or enhance its tolerance to drought stress. Based on the research reviewed in this article, it appears possible to develop locally adapted cultivars of sorghum that are drought tolerant and nutrient rich using modern plant breeding techniques.


Assuntos
Secas , Sorghum , Grão Comestível , Regulação da Expressão Gênica de Plantas , Melhoramento Vegetal , Sorghum/genética
3.
BMC Microbiol ; 21(1): 205, 2021 07 05.
Artigo em Inglês | MEDLINE | ID: mdl-34225658

RESUMO

BACKGROUND: Aquaponics are food production systems advocated for food security and health. Their sustainability from a nutritional and plant health perspective is, however, a significant challenge. Recirculated aquaculture systems (RAS) form a major part of aquaponic systems, but knowledge about their microbial potential to benefit plant growth and plant health is limited. The current study tested if the diversity and function of microbial communities in two commercial RAS were specific to the fish species used (Tilapia or Clarias) and sampling site (fish tanks and wastewaters), and whether they confer benefits to plants and have in vitro antagonistic potential towards plant pathogens. RESULTS: Microbial diversity and composition was found to be dependent on fish species and sample site. The Tilapia RAS hosted higher bacterial diversity than the Clarias RAS; but the later hosted higher fungal diversity. Both Tilapia and Clarias RAS hosted bacterial and fungal communities that promoted plant growth, inhibited plant pathogens and encouraged biodegradation. The production of extracellular enzymes, related to nutrient availability and pathogen control, by bacterial strains isolated from the Tilapia and Clarias systems, makes them a promising tool in aquaponics and in their system design. CONCLUSIONS: This study explored the microbial diversity and potential of the commercial RAS with either Tilapia or Clarias as a tool to benefit the aquaponic system with respect to plant growth promotion and control of plant diseases.


Assuntos
Aquicultura/métodos , Peixes-Gato/microbiologia , Interações Microbianas/fisiologia , Doenças das Plantas/prevenção & controle , Tilápia/microbiologia , Microbiologia da Água , Animais , Fenômenos Fisiológicos Bacterianos , Biodiversidade , Fungos/fisiologia , Doenças das Plantas/microbiologia , Plantas/microbiologia
4.
Phytopathology ; 111(12): 2168-2175, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-33973799

RESUMO

Phytophthora infestans causes late blight disease on potato and tomato and is currently controlled by resistant cultivars or intensive fungicide spraying. Here, we investigated an alternative means for late blight control by spraying potato leaves with double-stranded RNAs (dsRNA) that target the P. infestans genes essential for infection. First, we showed that the sporangia of P. infestans expressing green fluorescent protein (GFP) can take up in vitro synthesized dsRNAs homologous to GFP directly from their surroundings, including leaves, which led to the reduced relative expression of GFP. We further demonstrate the potential of spray-induced gene silencing (SIGS) in controlling potato late blight disease by targeting developmentally important genes in P. infestans such as guanine-nucleotide binding protein ß-subunit (PiGPB1), haustorial membrane protein (PiHmp1), cutinase (PiCut3), and endo-1,3(4)-ß-glucanase (PiEndo3). Our results demonstrate that SIGS can potentially be used to mitigate potato late blight; however, the degree of disease control is dependent on the selection of the target genes.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Assuntos
Phytophthora infestans , Solanum tuberosum , Inativação Gênica , Doenças das Plantas , Solanum tuberosum/genética , Esporângios
5.
Arch Virol ; 165(12): 2953-2959, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-33040310

RESUMO

Chrysanthemum virus B encodes a multifunctional p12 protein that acts as a transcriptional activator in the nucleus and as a suppressor of RNA silencing in the cytoplasm. Here, we investigated the impact of p12 on accumulation of major classes of small RNAs (sRNAs). The results show dramatic changes in the sRNA profiles characterised by an overall reduction in sRNA accumulation, changes in the pattern of size distribution of canonical siRNAs and in the ratio between sense and antisense strands, lower abundance of siRNAs with a U residue at the 5'-terminus, and changes in the expression of certain miRNAs, most of which were downregulated.


Assuntos
Carlavirus/genética , MicroRNAs/genética , Interferência de RNA , RNA de Plantas/genética , RNA Interferente Pequeno/genética , Chrysanthemum/genética , Chrysanthemum/virologia , Citoplasma/virologia
7.
Mol Plant Microbe Interact ; 31(9): 903-905, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-29558317

RESUMO

Phytophthora colocasiae is a phytopathogenic oomycete that causes leaf blight and corm rot on taro (Colocasia esculenta), an important staple crop in the tropics. The impact of P. colocasiae is a serious concern for food security in Asian and Oceanic regions. Vietnamese strain 7290 of P. colocasiae was sequenced (Illumina) to assemble a draft genome of 56.6 Mb, comprised of 19,853 scaffolds and 19,984 predicted protein-coding genes. As in other Phytophthora species, P. colocasiae possesses numerous pathogenicity-related genes, such as the RxLR class of effectors. This draft genome sequence of P. colocasiae provides a resource to underpin the first steps in determining the molecular mechanisms of disease development in this pathosystem.


Assuntos
Colocasia/parasitologia , Genoma/genética , Phytophthora/genética , Doenças das Plantas/parasitologia , Phytophthora/patogenicidade
8.
J Exp Bot ; 69(6): 1415-1432, 2018 03 14.
Artigo em Inglês | MEDLINE | ID: mdl-29365132

RESUMO

Autophagy is a major catabolic process whereby autophagosomes deliver cytoplasmic content to the lytic compartment for recycling. Autophagosome formation requires two ubiquitin-like systems conjugating Atg12 with Atg5, and Atg8 with lipid phosphatidylethanolamine (PE), respectively. Genetic suppression of these systems causes autophagy-deficient phenotypes with reduced fitness and longevity. We show that Atg5 and the E1-like enzyme, Atg7, are rate-limiting components of Atg8-PE conjugation in Arabidopsis. Overexpression of ATG5 or ATG7 stimulates Atg8 lipidation, autophagosome formation, and autophagic flux. It also induces transcriptional changes opposite to those observed in atg5 and atg7 mutants, favoring stress resistance and growth. As a result, ATG5- or ATG7-overexpressing plants exhibit increased resistance to necrotrophic pathogens and oxidative stress, delayed aging and enhanced growth, seed set, and seed oil content. This work provides an experimental paradigm and mechanistic insight into genetic stimulation of autophagy in planta and shows its efficiency for improving plant productivity.


Assuntos
Proteínas de Arabidopsis/genética , Arabidopsis/fisiologia , Proteína 5 Relacionada à Autofagia/genética , Família da Proteína 8 Relacionada à Autofagia/genética , Autofagia/genética , Aptidão Genética , Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Proteína 5 Relacionada à Autofagia/metabolismo , Família da Proteína 8 Relacionada à Autofagia/metabolismo , Transdução de Sinais/genética
9.
Plant Cell ; 27(2): 463-79, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25681156

RESUMO

Membrane trafficking is required during plant immune responses, but its contribution to the hypersensitive response (HR), a form of programmed cell death (PCD) associated with effector-triggered immunity, is not well understood. HR is induced by nucleotide binding-leucine-rich repeat (NB-LRR) immune receptors and can involve vacuole-mediated processes, including autophagy. We previously isolated lazarus (laz) suppressors of autoimmunity-triggered PCD in the Arabidopsis thaliana mutant accelerated cell death11 (acd11) and demonstrated that the cell death phenotype is due to ectopic activation of the LAZ5 NB-LRR. We report here that laz4 is mutated in one of three VACUOLAR PROTEIN SORTING35 (VPS35) genes. We verify that LAZ4/VPS35B is part of the retromer complex, which functions in endosomal protein sorting and vacuolar trafficking. We show that VPS35B acts in an endosomal trafficking pathway and plays a role in LAZ5-dependent acd11 cell death. Furthermore, we find that VPS35 homologs contribute to certain forms of NB-LRR protein-mediated autoimmunity as well as pathogen-triggered HR. Finally, we demonstrate that retromer deficiency causes defects in late endocytic/lytic compartments and impairs autophagy-associated vacuolar processes. Our findings indicate important roles of retromer-mediated trafficking during the HR; these may include endosomal sorting of immune components and targeting of vacuolar cargo.


Assuntos
Apoptose , Proteínas de Arabidopsis/metabolismo , Arabidopsis/citologia , Arabidopsis/imunologia , Complexos Multiproteicos/metabolismo , Imunidade Vegetal , Arabidopsis/genética , Autofagia , Resistência à Doença/imunologia , Endocitose , Genes de Plantas , Proteínas de Fluorescência Verde/metabolismo , Corpos Multivesiculares/metabolismo , Mutação , Doenças das Plantas/imunologia , Ligação Proteica , Subunidades Proteicas/metabolismo , Transporte Proteico , Homologia de Sequência de Aminoácidos
11.
Curr Issues Mol Biol ; 19: 73-88, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26364238

RESUMO

The oomycetes include some of the most devastating plant pathogens. In this review we discuss the latest results from oomycete and plant studies with emphasis on interaction studies. We focus on the outcomes of RNAseq and proteomics studies and some pitfalls of these approaches. Both pathogenic interactions and biological control are discussed. We underline the usefulness of studies at several levels of complexity from studies of one organism, up to two or more and within agricultural fields (managed settings) up to wild ecosystems. Finally we identify areas of future interest such as detailed interactome studies, dual RNAseq studies, peptide modification studies and population/meta omics with or without biological control agents.


Assuntos
Perfilação da Expressão Gênica , Interações Hospedeiro-Patógeno/genética , Oomicetos/fisiologia , Doenças das Plantas/genética , Doenças das Plantas/microbiologia , Plantas/genética , Plantas/metabolismo , Proteômica , Produtos Agrícolas/genética , Produtos Agrícolas/imunologia , Produtos Agrícolas/metabolismo , Produtos Agrícolas/microbiologia , Resistência à Doença/genética , Resistência à Doença/imunologia , Perfilação da Expressão Gênica/métodos , Sequenciamento de Nucleotídeos em Larga Escala , Interações Hospedeiro-Patógeno/imunologia , Doenças das Plantas/imunologia , Plantas/imunologia , Plantas/microbiologia , Proteômica/métodos , Transcriptoma
12.
New Phytol ; 211(3): 993-1007, 2016 08.
Artigo em Inglês | MEDLINE | ID: mdl-27010746

RESUMO

Phytophthora spp. encode large sets of effector proteins and distinct populations of small RNAs (sRNAs). Recent evidence has suggested that pathogen-derived sRNAs can modulate the expression of plant defense genes. Here, we studied the sRNA classes and functions associated with Phytophthora infestans Argonaute (Ago) proteins. sRNAs were co-immunoprecipitated with three PiAgo proteins and deep sequenced. Twenty- to twenty-two-nucleotide (nt) sRNAs were identified as the main interaction partners of PiAgo1 and high enrichment of 24-26-nt sRNAs was seen in the PiAgo4-bound sample. The frequencies and sizes of transposable element (TE)-derived sRNAs in the different PiAgo libraries suggested diversified roles of the PiAgo proteins in the control of different TE classes. We further provide evidence for the involvement of PiAgo1 in the P. infestans microRNA (miRNA) pathway. Protein-coding genes are probably regulated by the shared action of PiAgo1 and PiAgo5, as demonstrated by analysis of differential expression. An abundance of sRNAs from genes encoding host cell death-inducing Crinkler (CRN) effectors was bound to PiAgo1, implicating this protein in the regulation of the expanded CRN gene family. The data suggest that PiAgo1 plays an essential role in gene regulation and that at least two RNA silencing pathways regulate TEs in the plant-pathogenic oomycete P. infestans.


Assuntos
Proteínas Argonautas/metabolismo , Elementos de DNA Transponíveis/genética , MicroRNAs/metabolismo , Phytophthora infestans/genética , Phytophthora infestans/metabolismo , Citoplasma/metabolismo , Proteínas de Fluorescência Verde/metabolismo , Nucleotídeos/metabolismo , Oomicetos/metabolismo , Fases de Leitura Aberta/genética , Filogenia , Doenças das Plantas/microbiologia , Pseudogenes/genética , Reprodutibilidade dos Testes
13.
Plant Physiol ; 167(3): 738-52, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25576325

RESUMO

Recently, it has become evident that nucleolar passage of movement proteins occurs commonly in a number of plant RNA viruses that replicate in the cytoplasm. Systemic movement of Potato mop-top virus (PMTV) involves two viral transport forms represented by a complex of viral RNA and TRIPLE GENE BLOCK1 (TGB1) movement protein and by polar virions that contain the minor coat protein and TGB1 attached to one extremity. The integrity of polar virions ensures the efficient movement of RNA-CP, which encodes the virus coat protein. Here, we report the involvement of nuclear transport receptors belonging to the importin-α family in nucleolar accumulation of the PMTV TGB1 protein and, subsequently, in the systemic movement of the virus. Virus-induced gene silencing of two importin-α paralogs in Nicotiana benthamiana resulted in significant reduction of TGB1 accumulation in the nucleus, decreasing the accumulation of the virus progeny in upper leaves and the loss of systemic movement of RNA-CP. PMTV TGB1 interacted with importin-α in N. benthamiana, which was detected by bimolecular fluorescence complementation in the nucleoplasm and nucleolus. The interaction was mediated by two nucleolar localization signals identified by bioinformatics and mutagenesis in the TGB1 amino-terminal domain. Our results showed that while TGB1 self-interaction is needed for cell-to-cell movement, importin-α-mediated nucleolar targeting of TGB1 is an essential step in establishing the efficient systemic infection of the entire plant. These results enabled the identification of two separate domains in TGB1: an internal domain required for TGB1 self-interaction and cell-to-cell movement and the amino-terminal domain required for importin-α interaction in plants, nucleolar targeting, and long-distance movement.


Assuntos
Nucléolo Celular/metabolismo , Nicotiana/citologia , Nicotiana/virologia , Proteínas do Movimento Viral em Plantas/metabolismo , Vírus de Plantas/metabolismo , alfa Carioferinas/metabolismo , Sequência de Aminoácidos , Substituição de Aminoácidos , Técnicas de Silenciamento de Genes , Dados de Sequência Molecular , Fenótipo , Epiderme Vegetal/citologia , Proteínas do Movimento Viral em Plantas/química , Ligação Proteica , Sinais Direcionadores de Proteínas , Transporte Proteico
14.
J Exp Bot ; 66(9): 2785-94, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25788734

RESUMO

Phytophthora infestans is an oomycete that causes severe damage to potato, and is well known for its ability to evolve rapidly in order to overcome resistant potato varieties. An RNA silencing strategy was evaluated here to clarify if small interfering RNA homologous to selected genes in P. infestans could be targeted from the plant host to reduce the magnitude of the infection. As a proof-of-concept, a hairpin RNA (hp-RNA) construct using the GFP marker gene was designed and introduced in potato. At 72 hpi, a 55-fold reduction of the signal intensity of a corresponding GFP expressing P. infestans strain on leaf samples of transgenic plants, compared with wild-type potato, was detected. This suggests that an RNA interference construct in the potato host could be processed and target a transcript of the pathogen. Three genes important in the infection process of P. infestans, PiGPB1, PiCESA2, and PiPEC, together with PiGAPDH taking part in basic cell maintenance were subsequently tested using an analogous transgenic strategy. Out of these gene candidates, the hp-PiGPB1 targeting the G protein ß-subunit (PiGPB1) important for pathogenicity resulted in most restricted disease progress. Further, Illumina sequencing of inoculated transgenic potato leaves revealed sRNAs of 24/25 nt size homologous to the PiGPB1 gene in the transgenic plants indicating post-transcriptional silencing of the target gene. The work demonstrates that a host-induced gene-silencing approach is functional against P. infestans but is highly dependent on target gene for a successful outcome. This finding broadens the arsenal of control strategies to this important plant disease.


Assuntos
Interações Hospedeiro-Parasita/genética , Phytophthora infestans/fisiologia , Interferência de RNA , Solanum tuberosum/parasitologia , Resistência à Doença/genética , Doenças das Plantas/parasitologia , Plantas Geneticamente Modificadas/parasitologia , Plantas Geneticamente Modificadas/fisiologia
15.
J Gen Virol ; 95(Pt 12): 2831-2837, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25143075

RESUMO

Viral suppressors of RNA silencing (VSRs) are critical for the success of virus infection and efficient accumulation of virus progeny. The chrysanthemum virus B p12 protein acts as a transcription factor to regulate cell size and proliferation favourable for virus infection. Here, we showed that the p12 protein suppressed RNA silencing and was able to complement a VSR-deficient unrelated virus. Moreover, p12 counter-silencing activity could be uncoupled from its function as a transcription factor in the nucleus. The altered p12 protein, which lacked a nuclear localization signal and was not imported into the nucleus, was able to suppress RNA silencing as efficiently as the native protein. The data revealed new aspects of p12 functioning and identified a novel role for this viral zinc-finger transcription factor. The results provided a general insight into one of the activities of the p12 protein, which appeared to possess more than one function.


Assuntos
Vírus de Plantas/metabolismo , Interferência de RNA , Fatores de Transcrição/metabolismo , Proteínas Virais/metabolismo , Transporte Ativo do Núcleo Celular , Genes Virais , MicroRNAs , Mutação , Sinais de Localização Nuclear , Folhas de Planta/virologia , Vírus de Plantas/genética , Nicotiana/virologia , Fatores de Transcrição/genética , Proteínas Virais/genética
16.
BMC Microbiol ; 14: 308, 2014 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-25492044

RESUMO

BACKGROUND: The oomycete Phytophthora infestans possesses active RNA silencing pathways, which presumably enable this plant pathogen to control the large numbers of transposable elements present in its 240 Mb genome. Small RNAs (sRNAs), central molecules in RNA silencing, are known to also play key roles in this organism, notably in regulation of critical effector genes needed for infection of its potato host. RESULTS: To identify additional classes of sRNAs in oomycetes, we mapped deep sequencing reads to transfer RNAs (tRNAs) thereby revealing the presence of 19-40 nt tRNA-derived RNA fragments (tRFs). Northern blot analysis identified abundant tRFs corresponding to half tRNA molecules. Some tRFs accumulated differentially during infection, as seen by examining sRNAs sequenced from P. infestans-potato interaction libraries. The putative connection between tRF biogenesis and the canonical RNA silencing pathways was investigated by employing hairpin RNA-mediated RNAi to silence the genes encoding P. infestans Argonaute (PiAgo) and Dicer (PiDcl) endoribonucleases. By sRNA sequencing we show that tRF accumulation is PiDcl1-independent, while Northern hybridizations detected reduced levels of specific tRNA-derived species in the PiAgo1 knockdown line. CONCLUSIONS: Our findings extend the sRNA diversity in oomycetes to include fragments derived from non-protein-coding RNA transcripts and identify tRFs with elevated levels during infection of potato by P. infestans.


Assuntos
Interações Hospedeiro-Patógeno , Estágios do Ciclo de Vida , Phytophthora infestans/fisiologia , Doenças das Plantas/microbiologia , RNA de Transferência/metabolismo , Solanum tuberosum/microbiologia , Northern Blotting , Regulação Fúngica da Expressão Gênica , Inativação Gênica , Sequenciamento de Nucleotídeos em Larga Escala , Phytophthora infestans/genética , Phytophthora infestans/metabolismo , RNA Fúngico/química , RNA Fúngico/genética , RNA Fúngico/metabolismo , RNA de Transferência/química , RNA de Transferência/genética
17.
Plants (Basel) ; 13(15)2024 Jul 31.
Artigo em Inglês | MEDLINE | ID: mdl-39124236

RESUMO

Quinoa (Chenopodium quinoa Willd.) has gained worldwide recognition for its nutritional values, adaptability to diverse environments, and genetic diversity. This review explores the current understanding of quinoa tolerance to environmental stress, focusing on drought, salinity, heat, heavy metals, and UV-B radiation. Although drought and salinity have been extensively studied, other stress factors remain underexplored. The ever-increasing incidence of abiotic stress, exacerbated by unpredictable weather patterns and climate change, underscores the importance of understanding quinoa's responses to these challenges. Global gene banks safeguard quinoa's genetic diversity, supporting breeding efforts to develop stress-tolerant varieties. Recent advances in genomics and molecular tools offer promising opportunities to improve stress tolerance and increase the yield potential of quinoa. Transcriptomic studies have shed light on the responses of quinoa to drought and salinity, yet further studies are needed to elucidate its resilience to other abiotic stresses. Quinoa's ability to thrive on poor soils and limited water resources makes it a sustainable option for land restoration and food security enterprises. In conclusion, quinoa is a versatile and robust crop with the potential to address food security challenges under environmental constraints.

18.
Mol Plant ; 17(4): 552-578, 2024 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-38475993

RESUMO

Genomic selection, the application of genomic prediction (GP) models to select candidate individuals, has significantly advanced in the past two decades, effectively accelerating genetic gains in plant breeding. This article provides a holistic overview of key factors that have influenced GP in plant breeding during this period. We delved into the pivotal roles of training population size and genetic diversity, and their relationship with the breeding population, in determining GP accuracy. Special emphasis was placed on optimizing training population size. We explored its benefits and the associated diminishing returns beyond an optimum size. This was done while considering the balance between resource allocation and maximizing prediction accuracy through current optimization algorithms. The density and distribution of single-nucleotide polymorphisms, level of linkage disequilibrium, genetic complexity, trait heritability, statistical machine-learning methods, and non-additive effects are the other vital factors. Using wheat, maize, and potato as examples, we summarize the effect of these factors on the accuracy of GP for various traits. The search for high accuracy in GP-theoretically reaching one when using the Pearson's correlation as a metric-is an active research area as yet far from optimal for various traits. We hypothesize that with ultra-high sizes of genotypic and phenotypic datasets, effective training population optimization methods and support from other omics approaches (transcriptomics, metabolomics and proteomics) coupled with deep-learning algorithms could overcome the boundaries of current limitations to achieve the highest possible prediction accuracy, making genomic selection an effective tool in plant breeding.


Assuntos
Genoma de Planta , Melhoramento Vegetal , Humanos , Genoma de Planta/genética , Seleção Genética , Genômica , Fenótipo , Genótipo , Plantas , Polimorfismo de Nucleotídeo Único/genética
19.
Proc Natl Acad Sci U S A ; 107(21): 9909-14, 2010 May 25.
Artigo em Inglês | MEDLINE | ID: mdl-20457921

RESUMO

Fungal and oomycete plant pathogens translocate effector proteins into host cells to establish infection. However, virulence targets and modes of action of their effectors are unknown. Effector AVR3a from potato blight pathogen Phytophthora infestans is translocated into host cells and occurs in two forms: AVR3a(KI), which is detected by potato resistance protein R3a, strongly suppresses infestin 1 (INF1)-triggered cell death (ICD), whereas AVR3a(EM), which evades recognition by R3a, weakly suppresses host ICD. Here we show that AVR3a interacts with and stabilizes host U-box E3 ligase CMPG1, which is required for ICD. In contrast, AVR3a(KI/Y147del), a mutant with a deleted C-terminal tyrosine residue that fails to suppress ICD, cannot interact with or stabilize CMPG1. CMPG1 is stabilized by the inhibitors MG132 and epoxomicin, indicating that it is degraded by the 26S proteasome. CMPG1 is degraded during ICD. However, it is stabilized by mutations in the U-box that prevent its E3 ligase activity. In stabilizing CMPG1, AVR3a thus modifies its normal activity. Remarkably, given the potential for hundreds of effector genes in the P. infestans genome, silencing Avr3a compromises P. infestans pathogenicity, suggesting that AVR3a is essential for virulence. Interestingly, Avr3a silencing can be complemented by in planta expression of Avr3a(KI) or Avr3a(EM) but not the Avr3a(KI/Y147del) mutant. Our data provide genetic evidence that AVR3a is an essential virulence factor that targets and stabilizes the plant E3 ligase CMPG1, potentially to prevent host cell death during the biotrophic phase of infection.


Assuntos
Proteínas de Algas/imunologia , Proteínas de Algas/metabolismo , Phytophthora infestans/imunologia , Solanum tuberosum/enzimologia , Solanum tuberosum/imunologia , Ubiquitina-Proteína Ligases/metabolismo , Proteínas de Algas/genética , Estabilidade Enzimática , Interações Hospedeiro-Patógeno , Dados de Sequência Molecular , Phytophthora infestans/genética , Phytophthora infestans/metabolismo , Phytophthora infestans/patogenicidade , Solanum tuberosum/parasitologia , Virulência
20.
Plants (Basel) ; 12(4)2023 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-36840063

RESUMO

Barley (Hordeul vulgare L.) is the fourth most important cereal crop based on production and cultivated area. Biotic stresses, especially fungal diseases in barley, are devastating, incurring high possibilities of absolute yield loss. Identifying superior and stable yielding genotypes is crucial for accompanying the increasing barley demand. However, the identification and recommendation of superior genotypes is challenging due to the interaction between genotype and environment. Hence, the present investigation was aimed at evaluating the grain yield of different sets of spring barley genotypes when undergoing one of two treatments (no treatment and fungicide treatment) laid out in an alpha lattice design in six to seven locations for five years, through additive main effects and multiplicative interaction (AMMI), GGE biplot (genotype + genotype X environment), and stability analysis. The combined analysis of variance indicated that the environment was the main factor that contributed to the variation in grain yield, followed by genotype X environment interaction (GEI) effects and genotypic effects. Ten mega environments (MEs) with five MEs from each of the treatments harboured well-adapted, stable yielding genotypes. Exploiting the stable yielding genotypes with discreet use of the representative and discriminative environments identified in the present study could aid in breeding for the improvement of grain yield in spring barley genotypes.

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