Tomographic reconstruction of oxygen orbitals in lithium-rich battery materials.

The electrification of heavy-duty transport and aviation will require new strategies to increase the energy density of electrode materials1,2. The use of anionic redox represents one possible approach to meeting this ambitious target. However, questions remain regarding the validity of the O2-/O- oxygen redox paradigm, and alternative explanations for the origin of the anionic capacity have been proposed3, because the electronic orbitals associated with redox reactions cannot be measured by standard experiments. Here, using high-energy X-ray Compton measurements together with first-principles modelling, we show how the electronic orbital that lies at the heart of the reversible and stable anionic redox activity can be imaged and visualized, and its character and symmetry determined. We find that differential changes in the Compton profile with lithium-ion concentration are sensitive to the phase of the electronic wave function, and carry signatures of electrostatic and covalent bonding effects4. Our study not only provides a picture of the workings of a lithium-rich battery at the atomic scale, but also suggests pathways to improving existing battery materials and designing new ones.

Bidirectional Control of Autophagy by BECN1 BARA Domain Dynamics.

Membrane targeting of the BECN1-containing class III PI 3-kinase (PI3KC3) complexes is pivotal to the regulation of autophagy. The interaction of PI3KC3 complex II and its ubiquitously expressed inhibitor, Rubicon, was mapped to the first ß sheet of the BECN1 BARA domain and the UVRAG BARA2 domain by hydrogen-deuterium exchange and cryo-EM. These data suggest that the BARA ß sheet 1 unfolds to directly engage the membrane. This mechanism was confirmed using protein engineering, giant unilamellar vesicle assays, and molecular simulations. Using this mechanism, a BECN1 ß sheet-1 derived peptide activates both PI3KC3 complexes I and II, while HIV-1 Nef inhibits complex II. These data reveal how BECN1 switches on and off PI3KC3 binding to membranes. The observations explain how PI3KC3 inhibition by Rubicon, activation by autophagy-inducing BECN1 peptides, and inhibition by HIV-1 Nef are mediated by the switchable ability of the BECN1 BARA domain to partially unfold and insert into membranes.

Double-Layered Perovskite Oxyfluoride Cathodes with High Capacity Involving O-O Bond Formation for Fluoride-Ion Batteries.

Developing electrochemical high-energy storage systems is of crucial importance toward a green and sustainable energy supply. A promising candidate is fluoride-ion batteries (FIBs), which can deliver a much higher volumetric energy density than lithium-ion batteries. However, typical metal fluoride cathodes with conversion-type reactions cause a low-rate capability. Recently, layered perovskite oxides and oxyfluorides, such as LaSrMnO4 and Sr3Fe2O5F2, have been reported to exhibit relatively high rate performance and cycle stability compared to typical metal fluoride cathodes with conversion-type reactions, but their discharge capacities (∼118 mA h/g) are lower than those of typical cathodes used in lithium-ion batteries. Here, we show that double-layered perovskite oxyfluoride La1.2Sr1.8Mn2O7-δF2 exhibits (de) intercalation of two fluoride ions to rock-salt slabs and further (de) intercalation of excess fluoride ions to the perovskite layer, leading to a reversible capacity of 200 mA h/g. The additional fluoride-ion intercalation leads to the formation of O-O bond in the structure for charge compensation (i.e., anion redox). These results highlight the layered perovskite oxyfluorides as a new class of active materials for the construction of high-performance FIBs.

Face adaptation induces duration distortion of subsequent face stimuli in a face category-specific manner.

Studies have shown that duration perception depends on several visual processes. However, the stages of visual processes that contribute to duration perception remain unclear. This study examined the effects of categorical differences in face adaptation on perceived duration. In all the experiments, we compared the perceived durations of human, monkey, and cat faces (comparison stimuli) after adapting to a human face. Results revealed that the human comparison stimuli were perceived shorter than the monkey and cat comparison stimuli (categorical face adaptation on duration perception [CFAD]). The difference between the face categories disappeared when the adapting stimulus was rendered unrecognizable by phase scrambling, indicating that adaptation to low-level visual properties cannot fully account for the CFAD effect. Furthermore, CFAD was preserved but attenuated when the adapting stimulus was inverted or a 1,000-ms interval was inserted before the comparison stimuli, which implied that CFAD occurred as long as the adapting stimulus was perceived as a face and not simply based on conceptual category processes. These findings indicate that face adaptation affects perceived duration in a category-specific manner (the CFAD effect) and highlights the involvement of visual categorical processes in duration perception.

WormTensor: a clustering method for time-series whole-brain activity data from C. elegans.

BACKGROUND: In the field of neuroscience, neural modules and circuits that control biological functions have been found throughout entire neural networks. Correlations in neural activity can be used to identify such neural modules. Recent technological advances enable us to measure whole-brain neural activity with single-cell resolution in several species including [Formula: see text]. Because current neural activity data in C. elegans contain many missing data points, it is necessary to merge results from as many animals as possible to obtain more reliable functional modules. RESULTS: In this work, we developed a new time-series clustering method, WormTensor, to identify functional modules using whole-brain activity data from C. elegans. WormTensor uses a distance measure, modified shape-based distance to account for the lags and the mutual inhibition of cell-cell interactions and applies the tensor decomposition algorithm multi-view clustering based on matrix integration using the higher orthogonal iteration of tensors (HOOI) algorithm (MC-MI-HOOI), which can estimate both the weight to account for the reliability of data from each animal and the clusters that are common across animals. CONCLUSION: We applied the method to 24 individual C. elegans and successfully found some known functional modules. Compared with a widely used consensus clustering method to aggregate multiple clustering results, WormTensor showed higher silhouette coefficients. Our simulation also showed that WormTensor is robust to contamination from noisy data. WormTensor is freely available as an R/CRAN package https://cran.r-project.org/web/packages/WormTensor .

Suppression of Charge Recombination by Auxiliary Atoms in Photoinduced Charge Separation Dynamics with Mn Oxides: A Theoretical Study.

Charge separation is one of the most crucial processes in photochemical dynamics of energy conversion, widely observed ranging from water splitting in photosystem II (PSII) of plants to photoinduced oxidation reduction processes. Several basic principles, with respect to charge separation, are known, each of which suffers inherent charge recombination channels that suppress the separation efficiency. We found a charge separation mechanism in the photoinduced excited-state proton transfer dynamics from Mn oxides to organic acceptors. This mechanism is referred to as coupled proton and electron wave-packet transfer (CPEWT), which is essentially a synchronous transfer of electron wave-packets and protons through mutually different spatial channels to separated destinations passing through nonadiabatic regions, such as conical intersections, and avoided crossings. CPEWT also applies to collision-induced ground-state water splitting dynamics catalyzed by Mn4CaO5 cluster. For the present photoinduced charge separation dynamics by Mn oxides, we identified a dynamical mechanism of charge recombination. It takes place by passing across nonadiabatic regions, which are different from those for charge separations and lead to the excited states of the initial state before photoabsorption. This article is an overview of our work on photoinduced charge separation and associated charge recombination with an additional study. After reviewing the basic mechanisms of charge separation and recombination, we herein studied substituent effects on the suppression of such charge recombination by doping auxiliary atoms. Our illustrative systems are X-Mn(OH)2 tied to N-methylformamidine, with X=OH, Be(OH)3, Mg(OH)3, Ca(OH)3, Sr(OH)3 along with Al(OH)4 and Zn(OH)3. We found that the competence of suppression of charge recombination depends significantly on the substituents. The present study should serve as a useful guiding principle in designing the relevant photocatalysts.

Local orientation of chains at crystal/amorphous interfaces buried in isotactic polypropylene thin films.

A better understanding of the aggregation states of polymer chains in thin films is of pivotal importance for developing thin film polymer devices in addition to its inherent scientific interest. Here we report the preferential orientation of the crystalline lamellae for isotactic polypropylene (iPP) in spin-coated films by grazing incidence of wide-angle X-ray diffraction in conjunction with sum frequency generation vibrational spectroscopy, which provides information on the local conformation of chains at crystal/amorphous interfaces buried in a thin film. The crystalline orientation of iPP, which formed cross-hatched lamellae induced by lamellar branching, altered from a mixture of edge-on and face-on mother lamellae to preferential face-on mother lamellae with decreasing thickness. The orientation of methyl groups at the crystal/amorphous interfaces in the interior region of the iPP films changed, accompanied by a change in the lamellar orientation.

Changes in pulse waveforms in response to intraocular pressure elevation determined by laser speckle flowgraphy in healthy subjects.

BACKGROUND: The influences of intraocular pressure (IOP) elevations on the pulse waveform in the optic nerve head (ONH) were evaluated using laser speckle flowgraphy (LSFG) in normal subjects. METHODS: This prospective cross-sectional study was conducted at the Nagoya University Hospital. An ophthalmodynamometer was pressed on the sclera to increase the IOP by 20 mmHg or 30 mmHg for 1 min (experiment 1, 16 subjects) and by 30 mmHg for 10 min (experiment 2, 10 subjects). The mean blur rate (MBR) and the eight pulse waveform parameters determined using LSFG were measured before, immediately after and during an IOP elevation, and after the IOP returned to the baseline pressure. RESULTS: A significant elevation in the IOP and a significant reduction in the ocular perfusion pressure (OPP) were found after applying the ophthalmodynamometer (both, P < 0.001). The blowout score (BOS) reduced significantly (P < 0.001), and the flow acceleration index (FAI; P < 0.01) and resistivity index (RI; P < 0.001) increased significantly immediately after increasing the IOP by 20 or 30 mmHg (experiment 1). The BOS reduced significantly (P < 0.001), and the FAI (P < 0.01) and RI (P < 0.001) increased significantly after the IOP elevation by 30 mmHg in both experiment 2 and 1. However, the BOS and RI recovered significantly at time 10 compared to that in time 0 (immediately after IOP elevation) during the 10-min IOP elevation (P < 0.001 and P = 0.008, respectively). CONCLUSIONS: In conclusion, the BOS, FAI, and RI of the pulse waveforms changed significantly with an acute elevation in the IOP. The change should be related to the larger difference between the maximum and minimum MBRs during the IOP elevation.

Surface Segregation of a Star-Shaped Polyhedral Oligomeric Silsesquioxane in a Polymer Matrix.

A simple way to control only the surface properties of polymer materials, without changing the bulk properties, has long been desired. The segregation behavior when a component with a tiny amount fed into the matrix is thermodynamically enriched at the surface is one of the candidate methods. This capability was examined herein by focusing on a star-shaped polyhedral oligomeric silsesquioxane (s-POSS), where the central POSS unit is tethered to eight isobutyl-substituted POSS cages as a surface modifier. X-ray photoelectron spectroscopy revealed that the surface of a film of poly(methyl methacrylate) (PMMA) was almost completely covered with POSS units by adding just 5 wt % s-POSS to it. The segregated POSS dramatically altered the physical properties such as molecular motion and the mechanical and dielectric responses at the surface of the PMMA film. These findings make it clear that s-POSS is an excellent surface modifier for glassy polymers.

Morphology Changes in Perfluorosulfonated Ionomer from Thickness and Thermal Treatment Conditions.

The morphological changes of Nafion thin films with thicknesses from 10 to 200 nm on Pt substrate with various annealing histories (unannealed to 240 °C) were systematically investigated using grazing incidence small-angle X-ray scattering (GISAXS) and grazing incidence wide-angle X-ray scattering (GIWAXS). The results revealed that the hydrophilic ionic domain and hydrophobic backbone in Nafion thin films changed significantly when the annealing treatment exceeded the cluster transition temperature, which decreased proton conductivity, due to the constrained hydrophilic/hydrophobic phase separation, and increased the crystalline-rich domain. This research contributed to the understanding of ionomer thermal stability in the catalyst layer, which is subjected to thermal annealing during the hot-pressing process.

Charge separation and successive reconfigurations of electronic and protonic states in a water-splitting catalytic cycle with the Mn4CaO5 cluster. On the mechanism of water splitting in PSII.

Much insight into the basic mechanisms of photoexcited and collision-induced ground-state water splitting has been accumulated in our nonadiabatic electron wavepacket dynamics studies based on a building-block approach reaching up to systems of binuclear Mn oxo complexes. We here extend the study to a ground-state water-splitting catalytic cycle with tetranuclear Mn oxo complex Mn4CaO5, or Mn3Ca(H2O)2(OH)4-OH-Mn(4)(H2O)2, where Mn3Ca(H2O)2(OH)4 is fixed to a skewed cubic structure by µ-hydroxo bridges and is tied to the terminal group Mn(4)(H2O)2. We show using the method of real-time nonadiabatic electron wavepacket dynamics that four charge separation steps always take place only through the terminal group Mn(4)(H2O)2 alone, thereby producing 4 electrons and 4 protons which are transported to the acceptors. Each of the three charge separation steps is followed by a reloading process from the skewed cubic structure, by which electrons and protons are refilled to the vacant terminal group so that the next charge separation dynamics can resume. After the fourth charge separation an oxygen molecule is generated. It is emphasized that the mechanisms of O2 generation should depend on the multiple channels of reloading.

Binuclear Mn oxo complex as a self-contained photocatalyst in water-splitting cycle: Role of additional Mn oxides as a buffer of electrons and protons.

We theoretically propose a photoinduced water-splitting cycle catalyzed by a binuclear Mn oxo complex. In our "bottom-up approach" to this problem, we once proposed a working minimal model of water-splitting cycle in terms of a mononuclear Mn oxo complex as a catalyst along with water clusters [K. Yamamoto and K. Takatsuka, Phys. Chem. Chem. Phys. 20, 6708 (2018)]. However, this catalyst is not self-contained in that the cycle additionally needs buffering molecules for electrons and protons in order to reload the Mn complex with electrons and protons, which are lost by photoinduced charge separation processes. We here show that a binuclear Mn oxo complex works as a self-contained photocatalyst without further assistant of additional reagents and propose another catalytic cycle in terms of this photocatalyst. Besides charge separation and proton relay transfer, the proposed cycle consists of other fundamental chemical dynamics including electron-proton reloading, radical relay-transfer, and Mn reduction. The feasibility of the present water-splitting cycle is examined by means of full dimensional nonadiabatic electron-wavepacket dynamics based on multireference electronic wavefunctions and energy profiles estimated with rather accurate quantum chemical methods for all the metastable states appearing in the cycle.

RELATIONSHIP BETWEEN ABNORMALITIES OF PHOTORECEPTOR MICROSTRUCTURES AND MICROVASCULAR STRUCTURES DETERMINED BY OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY IN EYES WITH BRANCH RETINAL VEIN OCCLUSION.

PURPOSE: To determine whether the size of the foveal avascular zone (FAZ) is significantly correlated with the best-corrected visual acuity (BCVA) and to examine the relationship between the size and microstructural changes of the photoreceptors in eyes with a branch retinal vein occlusion. METHODS: The medical records of 69 eyes of patients (mean age, 64.6 ± 11.7 years) with a branch retinal vein occlusion were reviewed after the resolution of macular edema. All the patients underwent optical coherence tomography angiography for measurement of the FAZ area and spectral domain optical coherence tomography for determination of microstructural changes of the photoreceptors at the fovea. RESULTS: The superficial and deep FAZ areas in eyes with a branch retinal vein occlusion were 0.39 ± 0.36 mm and 0.63 ± 0.18 mm, respectively, and both were significantly larger than those observed in the fellow eyes (both, P < 0.001). The superficial FAZ area correlated with the posttreatment BCVA (r = 0.285, P = 0.027) but not with any parameters regarding the microstructures of the photoreceptors. Multivariate linear regression analysis showed that the pretreatment BCVA (ß = 0.519, P < 0.001) and integrity of the external limiting membrane (ß = -0.373, P = 0.001) were independent factors that significantly correlated with the posttreatment BCVA. CONCLUSION: There was no significant correlation between the FAZ area and microstructural parameters. However, the integrity of the external limiting membrane was significantly correlated with the posttreatment BCVA in eyes with a branch retinal vein occlusion.

On the Elementary Chemical Mechanisms of Unidirectional Proton Transfers: A Nonadiabatic Electron-Wavepacket Dynamics Study.

We propose a set of chemical reaction mechanisms of unidirectional proton transfers, which may possibly work as an elementary process in chemical and biological systems. Being theoretically derived based on our series of studies on charge separation dynamics in water splitting by Mn oxides, the present mechanisms have been constructed after careful exploration over the accumulated biological studies on cytochrome c oxidase (CcO) and bacteriorhodopsin. In particular, we have focused on the biochemical findings in the literature that unidirectional transfers of approximately two protons are driven by one electron passage through the reaction center (binuclear center) in CcO, whereas no such dissipative electron transfer is believed to be demanded in the proton transport in bacteriorhodopsin. The proposed basic mechanisms of unidirectional proton transfers are further reduced to two elementary dynamical processes, namely, what we call the coupled proton and electron-wavepacket transfer (CPEWT) and the inverse CPEWT. To show that the proposed mechanisms can indeed be materialized in a molecular level, we construct model systems with possible molecules that are rather familiar in biological chemistry, for which we perform the ab initio calculations of full-dimensional nonadiabatic electron-wavepacket dynamics coupled with all nuclear motions including proton transfers.

On the photocatalytic cycle of water splitting with small manganese oxides and the roles of water clusters as direct sources of oxygen molecules.

We theoretically studied the chemical principles behind the photodynamics of water splitting: 2H2O + 4hν + M → 4H+ + 4e- + O2 + M. To comprehend this simple looking but very complicated reaction, the mechanisms of at least three crucial phenomena, among others, need to be clarified, each of which is supposed to constitute the foundation of chemistry: (i) charge separation (4H+ + 4e-), (ii) the catalytic cycle for essentially the same reactions to be repeated by each of four photon absorptions with a catalyst M, and (iii) the generation of oxygen molecules of spin triplet. We have previously clarified the photodynamical mechanism of charge separation, which we refer to as coupled proton electron-wavepacket transfer (CPEWT), based on the theory of nonadiabatic electron wavepacket dynamics [K. Yamamoto and K. Takatsuka, ChemPhysChem, 2017, 18, 537]. CPEWT gives an idea of how charge separation can be materialized at each single photon absorption. Yet, this mechanism alone cannot address the above crucial items such as (ii) the catalytic cycle and (iii) O2 formation. In the studies of these fundamental processes, we constructed a possible minimal chemical system and perform semi-quantitative quantum chemical analyses, with which to attain insights about the possible mechanisms of photochemical water splitting. The present study has been inspired by the idea underlying the so-called Kok cycle, although we do not aim to simulate photosystem II in biological systems in nature. For instance, we assume here that a catalyst M (actually simple manganese oxides in this particular study) is pumped up to its excited states leading to charge separation by four-time photon absorption, each excitation of which triggers individual series of chemical reactions including the reorganization of the hydrogen-bonding network (cluster) of water molecules surrounding the photocatalytic center. It is shown that in the successive processes of restructuring of the relevant water cluster, the O[double bond, length as m-dash]O bond is formed and consequently an oxygen molecule of spin triplet can be isolated within a range of a given photon energy of about 3.0 eV.

Collision induced charge separation in ground-state water splitting dynamics.

In one type of photocatalytic dynamics of water splitting formally summarized as2H2O + 4hν + MH → 2H2O + M*H → 4H+ + 4e- + O2 + MHthe catalytic center M mainly composed of Mn oxides (clusters) along with supporting molecules like proteins is directly photoexcited and discharges electrons and protons. The mechanism can be comprehended in terms of the coupled proton electron-wavepacket transfer (CPEWT). In another type proposed in the literature, M is not directly photoexcited, and instead, lights are absorbed somewhere other than M, thereby creating complicated sequential steps (a ladder) of oxidation-reduction potential, thus sucking electrons successively from one molecular site to the next, and the final place providing electrons and protons is the catalytic center M. During charge separation dynamics, M is assumed to remain in the electronic ground state, and this type can be schematically summarized asM-H+ + Ω+ → M + H+ + Ω+e-where Ω indicates a cation species (a hole carrier) at the site of photon absorption. It is widely believed that the latter mechanism is responsible for water splitting in plants and cynobacteria, and M in photosystem II (PSII) is known to include Mn4CaO5. However, difficult questions about this mechanism of ground-state charge separation in the latter reaction arise as to whether it is quantum mechanically possible and what is it, if indeed possible? Besides, the time-constant for this reaction reported in the literature is so long, actually far longer than the time-scale for energy dissipation for inter- and intra-molecular vibrational energy redistribution, that the quantum mechanical coherence of the reaction should not be able to be maintained. More seriously, we wonder how protons and electrons can be isolated in the ground state, if any, and how they can be transferred unidirectionally (with no return)? We address these fundamental questions affirmatively by proposing a general chemical principle; collision induced charge separation dynamics in the ground state.

Contribution of global and local biological motion information to speed perception and discrimination.

To respond to movements of others and understand the intention of others' actions, it is important to accurately extract motion information from body movements. Here, using original and spatially scrambled point-light biological motions in upright and inverted orientations, we investigated the effect of global and local biological motion information on speed perception and sensitivity. The speed discrimination task revealed that speed sensitivity was higher for the original than for scrambled stimuli (Experiment 1) and higher for upright than for inverted stimuli (Experiment 2). Perceived motion speed was slower for the original than for scrambled stimuli (Experiment 2), but regardless of the orientation of the display (Experiment 1). A subsequent experiment comparing different scrambled stimuli of the same actions showed that the higher speed discrimination sensitivity to upright stimuli was preserved even in the scrambled biological motions (Experiment 3). Taken together, our findings suggest that perception of the speed of biological movements emanates from both global and local biological motion signals.

Photoinduced Charge Separation Catalyzed by Manganese Oxides onto a Y-Shaped Branching Acceptor Efficiently Preventing Charge Recombination.

A full-dimensional nonadiabatic electron wavepacket study is performed on Mn oxide catalytic charge separation to be created on an accepting molecular system, which is of Y-shaped structure and has a track-branching function for protons and electrons. This branching is necessary in cases in which the transferred electrons and protons are to be eventually carried to mutually different destinations without quick annihilation of the created pair (charge separation). However, as a result of the larger size of such a branched acceptor, the distance between the Mn oxide and the acceptor is so great that it is far from obvious whether an electron is successfully delivered through conical intersections. It is shown here that this can actually occur.

Hypoxia-induced localization of chemotaxis-related signaling proteins in Vibrio cholerae.

Vibrio cholerae has three sets of chemotaxis-related signaling proteins, of which only System II has been shown to be involved in chemotaxis. Here, we examined localization of green fluorescent protein (GFP)-fused components of System I. The histidine kinase (CheA1) and the adaptor (CheW0) of System I localized to polar and lateral membrane regions with standing incubation (microaerobic conditions), but their localization was lost after shaking (aerobic conditions). A transmembrane receptor of System I also showed polar and lateral localization with standing incubation. By contrast, GFP-fused components of System II localized constitutively to the flagellated pole. Nitrogen gas, sodium azide or carbonylcyanide m-chlorophenylhydrazone induced localization of CheA1-GFP even with shaking incubation, suggesting that the localization is controlled in response to changes in energy metabolism. Fluorescently labeled tetracysteine-tagged CheA1 also showed azide-induced localization, arguing against artifactual effects of GFP fusions. These results suggest that System I components are assembled into the supramolecular signaling complex in response to reduced cellular energy states, raising the possibility that the System I complex plays a role in sensing and signaling under microaerobic environments, such as in the host intestine.

The number-time interaction depends on relative magnitude in the suprasecond range.

Numerical representations influence temporal processing. Previous studies have consistently shown that larger numbers are perceived to last longer than smaller ones. However, whether this effect is modulated by the absolute or relative magnitudes of the numbers has yet to be fully understood. Here, participants observed single- and double-digit Arabic numerals in separate experimental blocks and reproduced stimulus duration of 600 or 1200 ms. Our results replicated previous findings that the duration of larger numbers was reproduced longer than that of smaller numbers within each digit set. Although the effect of numerical magnitude across single- and double-digit numerals was found when the numerals were presented for 600 ms, the difference was negligible when they were presented for 1200 ms, suggesting that relative magnitude is an important factor in the number-time interaction in the suprasecond range. These results suggest that contextual influence on number-time interaction may depend on the actual stimulus duration.