Detalhe da pesquisa
1.
Improved inter-protein contact prediction using dimensional hybrid residual networks and protein language models.
Brief Bioinform
; 24(2)2023 03 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36759333
2.
Protein complex structure prediction powered by multiple sequence alignments of interologs from multiple taxonomic ranks and AlphaFold2.
Brief Bioinform
; 23(4)2022 07 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35649388
3.
A reproducibility analysis-based statistical framework for residue-residue evolutionary coupling detection.
Brief Bioinform
; 23(2)2022 03 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35037015
4.
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.
Nat Methods
; 17(8): 807-814, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-32737473
5.
Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function.
Brief Bioinform
; 22(6)2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34448830
6.
Preparation and pH Detection Performance of Rosin-Based Fluorescent Polyurethane Microspheres.
J Fluoresc
; 33(4): 1593-1602, 2023 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-36790631
7.
MDockPeP: An ab-initio protein-peptide docking server.
J Comput Chem
; 39(28): 2409-2413, 2018 10 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-30368849
8.
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.
Bioinformatics
; 33(14): 2199-2201, 2017 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28369339
9.
Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
Proteins
; 85(3): 424-434, 2017 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-27802576
10.
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.
J Comput Aided Mol Des
; 31(8): 689-699, 2017 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-28668990
11.
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks.
J Chem Inf Model
; 56(6): 1013-21, 2016 06 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-26389744
12.
A chemical genetic approach demonstrates that MPK3/MPK6 activation and NADPH oxidase-mediated oxidative burst are two independent signaling events in plant immunity.
Plant J
; 77(2): 222-34, 2014 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-24245741
13.
Predicting peptide binding sites on protein surfaces by clustering chemical interactions.
J Comput Chem
; 36(1): 49-61, 2015 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-25363279
14.
Protein language model-embedded geometric graphs power inter-protein contact prediction.
Elife
; 122024 Apr 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-38564241
15.
Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI).
Proteins
; 81(12): 2183-91, 2013 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-24227686
16.
Automated large-scale file preparation, docking, and scoring: evaluation of ITScore and STScore using the 2012 Community Structure-Activity Resource benchmark.
J Chem Inf Model
; 53(8): 1905-14, 2013 Aug 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-23656179
17.
Genomics and data science: an application within an umbrella.
Genome Biol
; 20(1): 109, 2019 05 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-31142351
18.
Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.
Structure
; 27(9): 1469-1481.e3, 2019 09 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-31279629
19.
Comprehensive functional genomic resource and integrative model for the human brain.
Science
; 362(6420)2018 12 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-30545857
20.
The Usage of ACCLUSTER for Peptide Binding Site Prediction.
Methods Mol Biol
; 1561: 3-9, 2017.
Artigo
em Inglês
| MEDLINE | ID: mdl-28236229