Phosphorus acquisition strategy of Vallisneria natans in sediment based on in situ imaging techniques.

Phosphorus (P) availability is closely related to the distributions of pH, O2 and phosphatase activities in the rhizosphere of plants growing in soils and sediments. In this study, the P uptake processes and mechanisms of Vallisneria natans (V. natans) during two vegetation periods (i.e., week three and six) were revealed using three noninvasive 2D imaging techniques: planar optode (PO), diffusive gradients in thin films (DGT) and zymography. The results showed that increased phosphatase activity, O2 concentration and root-induced acidification were observed together in the rhizosphere of root segments and tips. In week three, when V. natans was young, the flux of DGT-labile P accumulated more in the rhizosphere in comparison with the bulk sediment. This was because increased phosphatase activity (of up to 35%) and root-induced acidification (with pH decreasing by up to 0.25) enhanced P acquisition of V. natans by the third week. However, the flux of DGT-labile P turned to depletion during weeks three to six of V. natans growth, after Fe plaque formed at the matured stage. The constant hydrolysis of phosphatase and acidification could not compensate for the P demand of the roots by the sixth week. At this stage, Fe plaque become the P pool, due to P fixation with solid Fe(III) hydroxides. Subsequently, V. natans roots acquired P from Fe plaque via organic acid complexation of Fe(III).

Altitudinal-modulated sediment inputs rather than the land-uses determine the distribution of lead in the riparian soils of the Three Gorges Reservoir.

Lead (Pb) as a toxic metal has potential ecological hazards for aquatic quality. However, the variation in the distribution patterns of Pb and its fractions in flooding soils with frequent and anti-seasonal water-level fluctuation and various human disturbances remains unclear. In this study, the distribution of Pb and its fractions in the riparian soils of the Three Gorges Reservoir (TGR) were delineated based on the differences in altitude and land-uses including farmland, orchard, forest and residential area. Then, we assessed the contamination and eco-risk of Pb in the soils and deciphered the key factors determining the distribution of Pb and its fractions. The results showed that the concentrations of Pb and its fractions in the soils decreased significantly with altitude, while the significant difference was not observed among the land-uses. The contamination of Pb in the soils reached a moderate level, and its eco-risk was very low by the potential eco-risk index and mobile Pb fraction. The source of soil Pb at the upper zone (> 160 m) was mainly from natural inputs, while the source at the lower zone (≤ 160 m) was attributed to anthropogenic contributions including ores mining, fossil fuel combustion, vehicle emissions and atmospheric deposition indicated by Pb isotopic ratios. With the limited effect of land-uses, the sediment inputs regulated by frequent water-level fluctuation determined the altitudinal distribution of Pb and its fractions in the flooding soils. The soil particle size dominated the migration and transformation of Pb over other soil properties such as pH and organic matters. The results of this study indicate that the anthropogenic Pb mainly exists in the soils of lower riparian zone in the TGR, and the frequent and anti-seasonal dry and rewetting alternation aggravates the potential for the Pb migration downstream due to the determinant of soil particles.

Mechanisms of antimony release from lacustrine sediments with increasing temperature.

Antimony (Sb) is more mobile in lacustrine sediments with seasonal warming. However, the mechanisms of Sb mobility in sediments are still unclear, especially considering the interactions among Sb, iron (Fe), manganese (Mn), and dissolved organic matter (DOM). In this study, high-resolution dialysis (HR-Peeper) and multi-spectral techniques simultaneously investigated changes in Sb, Fe, Mn, and DOM in two different ecological types (algal and grass) sediments with increasing temperature. We found that the dissolved Sb rapidly increased with the increase in temperature. The oxidation of Sb(III) to Sb(V) by Fe/Mn oxides in oxygen (O2) rich overlying water and surface sediment layers was one of the reasons for Sb concentration enhancement in pore water. Further, using excitation-emission matrix and parallel factor analysis (EEM-PARAFAC), synchronous fluorescence (SF) spectroscopy, fourier transform infrared (FTIR) spectroscopy, and two-dimensional correlation spectroscopy (2D-COS) revealed that complexation with DOM was the other reasons for Sb concentration increasing in sediments. This was demonstrated by the similar distribution pattern and significant correlation between Sb and tryptophan-like components. Titration experiments further revealed that Sb was more stably bound to tryptophan-like components in the aromatic C-H (660 cm-1), alcoholic C-O (1115 cm-1), alkene CC (1615 cm-1), and carboxylic acid OH (3390 cm-1) groups. The tryptophan-like components from the algae region had a higher binding force than that from the macrophytes region. Our study effectively promotes an understanding of Sb mobilization in lacustrine sediments.

Sediment arsenic remediation by submerged macrophytes via root-released O2 and microbe-mediated arsenic biotransformation.

Arsenic (As)-contaminated water restoration is extremely challenging because As remobilization from sediments can result in episodic or long-term release of As to the overlying water. In this study, by combining high-resolution imaging techniques with microbial community profiling, we examined the feasibility of utilizing the rhizoremediation of submerged macrophytes (Potamogeton crispus) to decrease As bioavailability and regulate its biotransformation in sediments. Results showed that P. crispus considerably decreased the rhizospheric labile As flux to lower than 4 pg cm-2 s-1 from larger than 7 pg cm-2 s-1, suggesting its effectiveness in promoting As retention in sediments. Iron plaques induced by radial oxygen loss from roots decreased the mobility of As by sequestering it. Additionally, Mn-oxides may act as an oxidizer for the oxidation of As(III) to As(V) in the rhizosphere, which can further increase the As adsorption owing to the strong binding affinity between As(V) and Fe-oxides. Furthermore, microbially mediated As oxidation and methylation were intensified in the microoxic rhizosphere, which decreased the mobility and toxicity of As by changing its speciation. Our study demonstrated that root-driven abiotic and biotic transformation contribute to As retention in sediments, which lays a foundation for applying macrophytes to the remediation of As-contaminated sediments.

Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD.

Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder their broad applications. In this study, through fusion of ABE8e with Rad51 DNA-binding domain, we generate a hyperactive ABE (hyABE) which offers improved A-to-G editing efficiency at the region (A10-A15) proximal to the PAM, with 1.2- to 7-fold improvement compared to ABE8e. Similarly, we develop optimized dual base editors (eA&C-BEmax and hyA&C-BEmax) with markedly improved simultaneous A/C conversion efficiency (1.2-fold and 1.5-fold improvement, respectively) compared to A&C-BEmax in human cells. Moreover, these optimized base editors catalyze efficiently nucleotide conversions in zebrafish embryos to mirror human syndrome or in human cells to potentially treat genetic diseases, indicating their great potential in broad applications for disease modeling and gene therapy.

Three-dimensional arterial spin labeling and diffusion kurtosis imaging in evaluating perfusion and infarct area size in acute cerebral ischemia.

BACKGROUND: Early thrombolytic therapy is crucial to treat acute cerebral infarction, especially since the onset of thrombolytic therapy takes 1-6 h. Therefore, early diagnosis and evaluation of cerebral infarction is important. AIM: To investigate the diagnostic value of magnetic resonance multi-delay three-dimensional arterial spin labeling (3DASL) and diffusion kurtosis imaging (DKI) in evaluating the perfusion and infarct area size in patients with acute cerebral ischemia. METHODS: Eighty-four patients who experienced acute cerebral ischemia from March 2019 to February 2021 were included. All patients in the acute stage underwent magnetic resonance-based examination, and the data were processed by the system's own software. The apparent diffusion coefficient (ADC), average diffusion coefficient (MD), axial diffusion (AD), radial diffusion (RD), average kurtosis (MK), radial kurtosis (fairly RK), axial kurtosis (AK), and perfusion parameters post-labeling delays (PLD) in the focal area and its corresponding area were compared. The correlation between the lesion area of cerebral infarction under MK and MD and T2-weighted imaging (T2WI) was analyzed. RESULTS: The DKI parameters of focal and control areas in the study subjects were compared. The ADC, MD, AD, and RD values in the lesion area were significantly lower than those in the control area. The MK, RK, and AK values in the lesion area were significantly higher than those in the control area. The MK/MD value in the infarct lesions was used to determine the matching situation. MK/MD < 5 mm was considered matching and MK/MD ≥ 5 mm was considered mismatching. PLD1.5s and PLD2.5s perfusion parameters in the central, peripheral, and control areas of the infarct lesions in MK/MD-matched and -unmatched patients were not significantly different. PLD1.5s and PLD2.5s perfusion parameter values in the central area of the infarct lesions in MK/MD-matched and -unmatched patients were significantly lower than those in peripheral and control areas. The MK and MD maps showed a lesion area of 20.08 ± 5.74 cm2 and 22.09 ± 5.58 cm2, respectively. T2WI showed a lesion area of 19.76 ± 5.02 cm2. There were no significant differences in the cerebral infarction lesion areas measured using the three methods. MK, MD, and T2WI showed a good correlation. CONCLUSION: DKI parameters showed significant difference between the focal and control areas in patients with acute ischemic cerebral infarction. 3DASL can effectively determine the changes in perfusion levels in the lesion area. There was a high correlation between the area of the infarct lesions diagnosed by DKI and T2WI.

Decrease in macrofauna density increases the sediment phosphorus release and maintains the high phosphorus level of water column in Lake Taihu: A case study on Grandidierella taihuensis.

Internal phosphorus (P) loading can increase the P level in the water column and further sustains cyanobacterial blooms. This study focused on the role of benthic fauna bioturbation in affecting the sediment P release and the P level of water column in a eutrophic lake, Lake Taihu. The macrofauna density decreased from 4766.56 ± 10541.80 ind/m2 in 2007 to 345 ± 447.63 ind/m2 in 2020 due to the frequent bottom-water hypoxia in Lake Taihu. The reduced macrofauna density majorly resulted from Grandidierella taihuensis, Limnodrilus hoffmeisteri, and Tanypus chinensis larvae, and their total density decreased by approximately 97% in 2020 compared to 2007. G. taihuensis, one of the major benthic faunas, was further used as a representative to investigate the effects of bioturbation on sediment P release using high-resolution sampling and imaging techniques. The results show that G. taihuensis can increase the O2 penetration depth by more than 20 mm through bio-irrigation, and causes the redox conditions in burrows and surrounding sediments to change dramatically within a few minutes due to the intermittent ventilation. Subsequent oxidation of the soluble Fe(II) led to the formation of Fe-oxide bound P in the surface sediments, thereby increasing the P retention in the sediments. When the G. taihuensis density was 1563 ind/m2 at the sampling site, approximately 0.12 g m-2 yr-1 P can be retained in sediments. As previous studies have shown that L. hoffmeisteri and T. chinensis played a similar role in increasing the P retention in sediments through their bioturbation activities, the sharp decline in benthic fauna density and burrowing activities in Lake Taihu should be an important reason for maintaining the high P level in the water column by decreasing the P retention in sediments.

Selective and simultaneous high resolution 2-D imaging of AsIII, CrIII and SbIII and dissolved oxygen by developing a new DGT technique comprising a hybrid sensor.

A new diffusive gradients in thin films technique (HR-MPTS DGT) with mercapto-functionalized attapulgite in a binding gel was developed for simultaneous two-dimensional (2-D) chemical imaging of AsIII, CrIII and SbIII selectively at the submillimeter scale, combined with laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) analysis. The HR-MPTS DGT exhibited selective accumulation of AsIII, SbIII and CrIII (> 97%), yet negligible accumulation of AsV, SbV and CrVI (< 2%). Accumulation of AsIII, CrIII and SbIII on the binding gel had a linear relationship (R2 > 0.99) with the corresponding standardized laser ablation signals, proving the feasibility of LA-ICP-MS analysis. Analysis for AsIII, CrIII and SbIII was provided with favorable analytical precision (relative standard deviation <10%). With the purpose of evaluating the dynamics of AsIII, CrIII, SbIII and O2 in the rooting zone, a hybrid sensor, which comprises the HR-MPTS gel overlying an O2 planar optode, was deployed in rhizosphere sediments. Results showed that the consumption of both AsIII and SbIII due to the oxidation extended ~4.48 mm into the sediments, which was consistent with the extension length of the oxidized sediment layers around the roots created by O2 leakage.

Mechanistic insights into trace metal mobilization at the micro-scale in the rhizosphere of Vallisneria spiralis.

Mobilization of trace metals in the rhizosphere of macrophytes is controlled by root-driven chemical changes, especially the steep gradients of O2 and pH from the rhizosphere to bulk sediments. Here, the O2 and pH dynamics, and the distribution of trace metal, in the rhizosphere of Vallisneria spiralis were obtained using planar optodes and diffusive gradients in thin films, respectively. Radial O2 loss (ROL) and acidification occurred on all visible roots of V. spiralis and exhibited highly spatiotemporal dynamics depending on the root growth and various environmental conditions. Trace metals showed different mobilization mechanisms in the rhizosphere. ROL and produced Fe(III) (oxyhydr)oxides decreased the mobility of Fe, As, Co, V and W in the rhizosphere. However, Mn, Ni and Cu exhibited greater mobility in the rhizosphere than bulk sediments as a result of the oxidation of metal sulfide and proton-induced dissolution of minerals. In particular, Co and Ni presented increased activity at the interface between rhizosphere and bulk sediment, which was attributed to the redox dissolution processes of Fe and Mn as a result of ROL and rhizosphere acidification. These results provide new insights into the roles of macrophyte root-induced O2 and pH changes in controlling trace metal mobility in sediments.

Identification, molecular evolution, and expression analysis of the transcription factor Smad gene family in lamprey.

Transcription factor small mothers against decapentaplegic (Smad) family SMAD proteins are the essential intracellular signal mediators and transcription factors for transforming growth factor ß (TGF-ß) signal transduction pathway, which usually exert pleiotropic actions on cell physiology, including immune response, cell migration and differentiation. In this study, the Smad family was identified in the most primitive vertebrates through the investigation of the transcriptome data of lampreys. The topology of phylogenetic tree showed that the four Smads (Smad1, Smad3, Smad4 and Smad6) in lampreys were subdivided into four different groups. Meanwhile, homology analysis indicated that most Smads were conserved with typical Mad Homology (MH) 1 and MH2 domains. In addition, Lethenteron reissneri Smads (Lr-Smads) adopted general Smads folding structure and had high tertiary structural similarity with human Smads (H-Smads). Genomic synteny analysis revealed that the large-scale duplication blocks were not found in lamprey genome and neighbor genes of lamprey Smads presented dramatic differences compared with jawed vertebrates. Importantly, quantitative real-time PCR analysis demonstrated that Smads were widely expressed in lamprey, and the expression level of Lr-Smads mRNA was up-regulated with different pathogenic stimulations. Moreover, depending on the weighted gene co-expression network analysis (WGCNA), four Lr-Smads were identified as two meaningful modules (green and gray). The functional analysis of these two modules showed that they might have a correlation with ployI:C. And these genes presented strong positive correlation during the immune response from the results of Pearson's correlation analysis. In conclusion, our results would not only enrich the information of Smad family in jawless vertebrates, but also lay the foundation for immunity in further study.

Terrain-modulated deposition of atmospheric lead in the soils of alpine forest, central China.

Alpine ecosystem has a potential to intercept the transport of atmospheric metals, while the regulation mechanisms with variations in altitude and slope direction remain unclear. In this study, the soil and moss samples on the northern and southern slopes of Shennongjia Mountain were collected with altitude to quantitatively identify the sources of lead (Pb) and to decipher the regulation mechanisms of altitude and slope on the Pb distribution. The results showed that the concentrations of Pb decreased evidently with soil depth, and in the O (organic soils) and A (surface mineral soils) horizons they increased with altitude. The Pb isotopes and moss biomonitoring revealed that Pb was mainly from atmospheric deposition, and the sources included fossil fuel combustion, ore mining and smelting. Based on a binary mixing model of Pb isotopes, the percentage of atmospheric Pb in the O and A horizons and mosses averaged 58.8%, 43.7% and 71.0%, respectively. Atmospheric wet deposition strikingly controlled the distribution of soil Pb along the altitude. Canopy filtering and leaching also impacted the accumulation of Pb in the forest floor. The significant difference in the atmospheric Pb accumulation in the soils between the two slopes was not observed as expected, since atmospheric dry deposition from northwestern China contributed to the Pb accumulation on the northern slope according to the Pb isotopic ratios and air mass trajectories. The results of this study indicate that altitude determines the distribution pattern of atmospheric Pb, while slope direction screens the source region of Pb in alpine ecosystems.

O2 distribution and dynamics in the rhizosphere of Phragmites australis, and implications for nutrient removal in sediments.

Root-triggered microscale variations in O2 distribution in the rhizosphere of young Phragmites australis are important for nutrient removal in sediments. In this study, the micro-scale O2 dynamics and the small-scale changes of soluble reactive phosphorus (SRP) and ammonium (NH4+) in the rhizosphere of P. australis were investigated using planar optodes and high-resolution dialysis (HR-Peeper), respectively. Results suggested that root O2 leakage has a highly variable distribution depending on the stage of root growth, the site of O2 leakage gradually shift from the entire emerging main roots to the main root tip and subsequently shifted the emerging lateral roots. The O2 concentration increased in the rhizosphere with increasing light intensity and O2 levels in the overlying water. Continuous O2 release from the lateral roots causes the formation of iron plaque on the surface of lateral roots, which reduce the mobility of P by adsorption of iron plaque in the rhizosphere. The oscillation of oxic-anoxic root zones improves nitrogen removal through the processes of anammox, heterotrophic denitrification and nitrification. This work from the micro-scale demonstrates that the O2 concentration is the spatio-temporal variations in the rhizosphere, and it presents an important role for nutrient removal in sediments.

A new DGT technique comprising a hybrid sensor for the simultaneous high resolution 2-D imaging of sulfides, metallic cations, oxyanions and dissolved oxygen.

A new diffusive gradients in thin films technique (HR-ZCA DGT) was developed for simultaneous two-dimensional (2-D) chemical imaging of sulfides, metallic cations and oxyanions (S, Cd, Co, Fe, Cu, Mn, Ni, Pb, Zn, As, Cr, Mo, Sb, Se, V, P and W) at the submillimeter scale, combined with laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) analysis. A novel binding gel was prepared using a double precipitation method with AgI and zirconium oxide (Zr-oxide) deposited sequentially on a preformed Chelex-100 resin gel. A good linear relationship was observed (R2>0.99) between mass accumulation of the 17 assessed elements on the binding gel and the corresponding standardized laser ablation signals (signals of elements divided by signals of internal standard 13C), proving the feasibility of LA-ICP-MS analysis. Good analytical precision (RSD<12 %) was achieved for all 17 elements. A hybrid sensor comprising the novel DGT binding gel overlying an O2 planar optrode was then tested in sediments to evaluate the dynamics of O2 and multiple elements. Results showed that the mobility of As, P and W were controlled by precipitation/dissolution processes with Fe/Mn oxides. V, Co, Ni, Zn, Mo, Cd and Sb were released at the sediment surface with the oxidation of iron sulfides.

Spatiotemporal distribution of vanadium in the flooding soils mediated by entrained-sediment flow and altitude in the Three Gorges Reservoir.

The re-emergence of vanadium (V) as a toxic metal has been highlighted recently due to its long-standing environmental and health hazard. This work targeted the world largest reservoir-Three Gorges Reservoir (TGR) to explore the spatial variation of V in the flooding soils from 2014 to 2018; meanwhile, the typical riparian zones with different altitudes and land-uses at the middle reach of the TGR were selected to decipher the key drivers on the V distribution. The results showed that the concentrations of soil V in the mainstream markedly exceeded local background, but they did not vary significantly with time except a marked increase at the upper-middle reaches. Spatially, the concentrations of soil V increased towards the dam, and the increase trend became increasingly significant with time. At the typical riparian zone, the concentrations of soil V decreased strikingly with altitude despite the difference in the land-uses, and a marked change-point occurred at 160-165 m. The soil V dominated by residual fraction, followed by oxidizable and reducible fractions, and then the minimal acid-soluble fraction. The contamination and eco-risk of V in the soils were low with similar spatiotemporal variation to its concentrations. Entrained-sediment flow and particle size rather than pH and organic matters led to the spatiotemporal variation in the distribution of soil V in the mainstream, and the driving effects tended to be more predominant with time. Altitude-regulated alteration of soil properties including particle sizes and iron/manganese (hydr)oxides with different flooding duration dominated the vertical distribution of V over the local land-uses at the riparian zone. Our results reveal the hotspots of V contamination in the riparian soils of the TGR and highlight unceasing focus on the variation in the distribution and dynamic migration of soil V due to its levels out of limits and changing soil conditions.

A new DGT technique comprised in a hybrid sensor for the simultaneous measurement of ammonium, nitrate, phosphorus and dissolved oxygen.

A new diffusive gradients in thin films technique (ZrO-AT DGT) with zirconium oxide, A-62 MP and T-42H resins containing in a single binding gel was developed for simultaneous measurement of nitrate (NO3-N), ammonium (NH4-N) and phosphate (PO4-P). The DGT uptake was found to be independent of pH variation from 3.2-8.7. Ionic strengths below 5, 10 and 750 mmol·L-1 NaCl did not affect DGT uptake of NH4-N, NO3-N and PO4-P, respectively. This new DGT was deployed in natural freshwater environments, with in situ measurements of the three nutrients found to be accurate. It ensured that rinsing the exposed surface of the DGT device at 3-day intervals can prevent biofouling. Additionally, a hybrid sensor comprising the novel DGT binding layer overlying an O2 planar optrode was tested in sediments to evaluate the dynamics of O2 and the three nutrients. Results showed that PO4-P and NO3-N fluxes decreased while fluxes of NH4-N increased under aerobic conditions. Nearly simultaneous variation in O2 and NO3-N was observed at the sediment-water interface (SWI) and transformation of NO3-N and PO4-P was found to be sensitively influenced by O2 dynamics.

Divergent patterns of soil phosphorus discharge from water-level fluctuation zone after full impoundment of Three Gorges Reservoir, China.

Phosphorus (P) discharged from soils in the water-level fluctuation (WLF) zone becomes increasingly important to the water quality control of the Three Gorges Reservoir (TGR) as the decrease in P input from upstream reaches and point-source pollution. To investigate the amount of soil P discharge from the WLF zone since the full impoundment of the TGR in 2010, soil and sediment samples were collected along the altitudinal gradients (140, 150, 160, 170, and 180 m above sea level) in three transects in the middle reaches of the TGR. Soil P composition was determined by a sequential extraction procedure. Different amounts of P discharge from the WLF zone were found among three soil types because of their difference in the initial P content before impoundment, with an order of yellow earth (171.1 g m-2), fluvo-aquic soil (141.7 g m-2), and purple soil (73.8 g m-2). An altitudinal pattern of soil P discharge was observed with the maximum at the 170-m sites. The downward transport of exchangeable P and clay-bound P with runoff was the major path of the soil P discharge at the 170-m sites with a slope gradient > 15°. Considerable P discharge with erosion at the upper section of the WLF zone was facilitated by the longer exposure period compared with that at bottom section (150-m sites) because of the annual anti-seasonal impoundment-exposure cycles of the TGR. The transformation of Al/Fe-P and subsequent release to water was a main mechanism of the soil P discharge during the impoundment period. The altitudinal pattern of P discharge was a result of joint effects of slope gradient, soil P forms, and the anti-seasonal hydrological regime of the TGR. The results highlight the critical role of the upper section (165-175 m) in controlling the P output from the WLF zone into the water of the TGR.