Using an artificial neural network to map cancer common data elements to the biomedical research integrated domain group model in a semi-automated manner.

BACKGROUND: The medical community uses a variety of data standards for both clinical and research reporting needs. ISO 11179 Common Data Elements (CDEs) represent one such standard that provides robust data point definitions. Another standard is the Biomedical Research Integrated Domain Group (BRIDG) model, which is a domain analysis model that provides a contextual framework for biomedical and clinical research data. Mapping the CDEs to the BRIDG model is important; in particular, it can facilitate mapping the CDEs to other standards. Unfortunately, manual mapping, which is the current method for creating the CDE mappings, is error-prone and time-consuming; this creates a significant barrier for researchers who utilize CDEs. METHODS: In this work, we developed a semi-automated algorithm to map CDEs to likely BRIDG classes. First, we extended and improved our previously developed artificial neural network (ANN) alignment algorithm. We then used a collection of 1284 CDEs with robust mappings to BRIDG classes as the gold standard to train and obtain the appropriate weights of six attributes in CDEs. Afterward, we calculated the similarity between a CDE and each BRIDG class. Finally, the algorithm produces a list of candidate BRIDG classes to which the CDE of interest may belong. RESULTS: For CDEs semantically similar to those used in training, a match rate of over 90% was achieved. For those partially similar, a match rate of 80% was obtained and for those with drastically different semantics, a match rate of up to 70% was achieved. DISCUSSION: Our semi-automated mapping process reduces the burden of domain experts. The weights are all significant in six attributes. Experimental results indicate that the availability of training data is more important than the semantic similarity of the testing data to the training data. We address the overfitting problem by selecting CDEs randomly and adjusting the ratio of training and verification samples. CONCLUSIONS: Experimental results on real-world use cases have proven the effectiveness and efficiency of our proposed methodology in mapping CDEs with BRIDG classes, both those CDEs seen before as well as new, unseen CDEs. In addition, it reduces the mapping burden and improves the mapping quality.

Muscle fatigue detection and treatment system driven by internet of things.

BACKGROUND: Internet of things is fast becoming the norm in everyday life, and integrating the Internet into medical treatment, which is increasing day by day, is of high utility to both clinical doctors and patients. While there are a number of different health-related problems encountered in daily life, muscle fatigue is a common problem encountered by many. METHODS: To facilitate muscle fatigue detection, a pulse width modulation (PWM) and ESP8266-based fatigue detection and recovery system is introduced in this paper to help alleviate muscle fatigue. The ESP8266 is employed as the main controller and communicator, and PWM technology is employed to achieve adaptive muscle recovery. Muscle fatigue can be detected by surface electromyography signals and monitored in real-time via a wireless network. RESULTS: With the help of the proposed system, human muscle fatigue status can be monitored in real-time, and the recovery vibration motor status can be optimized according to muscle activity state. DISCUSSION: Environmental factors had little effect on the response time and accuracy of the system, and the response time was stable between 1 and 2 s. As indicated by the consistent change of digital value, muscle fatigue was clearly diminished using this system. CONCLUSIONS: Experiments show that environmental factors have little effect on the response time and accuracy of the system. The response time is stably between 1 and 2 s, and, as indicated by the consistent change of digital value, our systems clearly diminishes muscle fatigue. Additionally, the experimental results show that the proposed system requires minimal power and is both sensitive and stable.

Exploring Observability of Attractor Cycles in Boolean Networks for Biomarker Detection.

Boolean Network (BN) is a simple and popular mathematical model that has attracted significant attention from systems biology due to its capacity to reveal genetic regulatory network behavior. In addition, observability, as an important network feature, plays a vital role in deciphering the underlying mechanisms driving a genetic regulatory network and has been widely investigated. Prior studies examined observability of BNs and other complex networks. That said, observability of attractor, which can serve as a biomarker for disease, has not been fully examined in the literature. In this study, we formulated a new definition for singleton or cyclic attractor observability in BNs and developed an effective methodology to resolve the captured problem. We also showed complexity is of O(Pmn), when the maximal period of cyclic attractor is P, the number of attractor is m and the number of genes is n. Importantly, we have confirmed our method can faithfully predict the expression pattern of segment polarity genes in Drosophila melanogaster and showed it can effectively and efficiently deal with the captured observability problem.