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1.
J Sep Sci ; 47(9-10): e2400120, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38772720

RESUMO

Current techniques identifying herbal medicine species require marker labeling or lack systematical accuracy (expert authentication). There is an emerging interest in developing an accurate and label-free tool for herbal medicine authentication. Here, a high-resolution microfluidic-based method is developed for identifying herbal species by protoplast subpopulations. Moso bamboo and henon bamboo are used as a model to be differentiated based on protoplast. Their biophysical properties factors are characterized to be 7.09 (± 0.39) × 108 V/m2 and 6.54 (± 0.26) × 108 V/m2, respectively. Their biophysical distributions could be distinguished by the Cramér-von Mises criterion with a 94.60% confidence level. The subpopulations of each were compared with conventional flow cytometry indicating the existence of subpopulations and the differences between the two species. The subsets divided by a biophysical factor of 8.05(± 0.51) × 108 V/m2 suggest good consistency with flow cytometry. The work demonstrated the possibility of microfluidics manipulation on protoplast for medication safety use taking advantage of dielectrophoresis. The device is promising in developing a reliable and accurate way of identifying herbal species with difficulties in authentication.


Assuntos
Folhas de Planta , Protoplastos , Análise de Célula Única , Protoplastos/citologia , Folhas de Planta/química , Citometria de Fluxo , Técnicas Analíticas Microfluídicas/instrumentação , Microfluídica/instrumentação
2.
Proc Natl Acad Sci U S A ; 117(51): 32731-32738, 2020 12 22.
Artigo em Inglês | MEDLINE | ID: mdl-33288703

RESUMO

In plant cells, cortical microtubules (CMTs) generally control morphogenesis by guiding cellulose synthesis. CMT alignment has been proposed to depend on geometrical cues, with microtubules aligning with the cell long axis in silico and in vitro. Yet, CMTs are usually transverse in vivo, i.e., along predicted maximal tension, which is transverse for cylindrical pressurized vessels. Here, we adapted a microwell setup to test these predictions in a single-cell system. We confined protoplasts laterally to impose a curvature ratio and modulated pressurization through osmotic changes. We find that CMTs can be longitudinal or transverse in wallless protoplasts and that the switch in CMT orientation depends on pressurization. In particular, longitudinal CMTs become transverse when cortical tension increases. This explains the dual behavior of CMTs in planta: CMTs become longitudinal when stress levels become low, while stable transverse CMT alignments in tissues result from their autonomous response to tensile stress fluctuations.


Assuntos
Microtúbulos/química , Microtúbulos/metabolismo , Protoplastos/citologia , Anisotropia , Arabidopsis/citologia , Arabidopsis/genética , Técnicas de Cultura de Células/instrumentação , Técnicas de Cultura de Células/métodos , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Células Vegetais/metabolismo , Plantas Geneticamente Modificadas , Poloxâmero/química , Pressão
3.
Genome Res ; 29(8): 1343-1351, 2019 08.
Artigo em Inglês | MEDLINE | ID: mdl-31186303

RESUMO

Eukaryotic gene expression is often tightly regulated by interactions between transcription factors (TFs) and their DNA cis targets. Yeast one-hybrid (Y1H) is one of the most extensively used methods to discover these interactions. We developed a high-throughput meiosis-directed yeast one-hybrid system using the Magic Markers of the synthetic genetic array analysis. The system has a transcription factor-DNA interaction discovery rate twice as high as the conventional diploid-mating approach and a processing time nearly one-tenth of the haploid-transformation method. The system also offers the highest accuracy in identifying TF-DNA interactions that can be authenticated in vivo by chromatin immunoprecipitation. With these unique features, this meiosis-directed Y1H system is particularly suited for constructing novel and comprehensive genome-scale gene regulatory networks for various organisms.


Assuntos
DNA/genética , Análise em Microsséries/métodos , Saccharomyces cerevisiae/genética , Fatores de Transcrição/genética , Técnicas do Sistema de Duplo-Híbrido , Animais , DNA/metabolismo , Regulação da Expressão Gênica , Redes Reguladoras de Genes , Marcadores Genéticos , Humanos , Meiose , Análise em Microsséries/instrumentação , Plasmídeos/química , Plasmídeos/metabolismo , Ploidias , Populus/citologia , Ligação Proteica , Protoplastos/citologia , Protoplastos/metabolismo , Saccharomyces cerevisiae/metabolismo , Fatores de Tempo , Fatores de Transcrição/metabolismo
4.
Plant Cell Rep ; 40(6): 1037-1045, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32959126

RESUMO

KEY MESSAGE: We obtained a complete mutant line of Petunia having mutations in both F3H genes via Cas9-ribonucleoproteins delivery, which exhibited a pale purplish pink flower color. The CRISPR-Cas system is now revolutionizing agriculture by allowing researchers to generate various desired mutations in plants at will. In particular, DNA-free genome editing via Cas9-ribonucleoproteins (RNPs) delivery has many advantages in plants; it does not require codon optimization or specific promoters for expression in plant cells; furthermore, it can bypass GMO regulations in some countries. Here, we have performed site-specific mutagenesis in Petunia to engineer flower color modifications. We determined that the commercial Petunia cultivar 'Madness Midnight' has two F3H coding genes and designed one guide RNA that targets both F3H genes at once. Among 67 T0 plants regenerated from Cas9-RNP transfected protoplasts, we obtained seven mutant lines that contain mutations in either F3HA or F3HB gene and one complete mutant line having mutations in both F3H genes without any selectable markers. It is noteworthy that only the f3ha f3hb exhibited a clearly modified, pale purplish pink flower color (RHS 69D), whereas the others, including the single copy gene knock-out plants, displayed purple violet (RHS 93A) flowers similar to the wild-type Petunia. To the best of our knowledge, we demonstrated a precedent of ornamental crop engineering by DNA-free CRISPR method for the first time, which will greatly accelerate a transition from a laboratory to a farmer's field.


Assuntos
Sistemas CRISPR-Cas , Técnicas de Inativação de Genes/métodos , Genes Duplicados , Petunia/genética , Pigmentação/genética , Proteína 9 Associada à CRISPR/genética , Proteína 9 Associada à CRISPR/isolamento & purificação , Edição de Genes/métodos , Genes de Plantas , Mutagênese Sítio-Dirigida , Petunia/fisiologia , Plantas Geneticamente Modificadas/genética , Protoplastos/citologia , Protoplastos/fisiologia , RNA Guia de Cinetoplastídeos , Ribonucleoproteínas/genética , Ribonucleoproteínas/metabolismo
5.
Plant Cell Rep ; 40(6): 1059-1070, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32945949

RESUMO

KEY MESSAGE: Calli protoplasts isolated from three soybean cultivars are useful tools to evaluate guide RNAs for clustered regularly interspaced short palindromic repeats (CRISPR)-based precise gene editing. A type V CRISPR effector, LbCpf1(Cas12a) from Lachnospiraceae bacterium ND 2006, has been used for precision editing of the plant genome. We report that callus-derived protoplasts from three soybeans, including Glycine Max var. Williams 82 and two Korean cultivars (Kwangan and Daewon) represent efficient systems for the screening of active crRNA for CRISPR/LbCpf1. CRISPR/LbCpf1 ribonucleoproteins (RNPs) were delivered as complexes of purified endonucleases mixed with designed crRNA to simultaneously edit target genes of GlymaFAD2-1A and GlymaFAD2-1B transfected into three soybean protoplasts including genome-sequenced Williams 82 with cultivars, Kwangan and Daewon. Previously, we reported that nine crRNAs designed for LbCpf1 exhibited varying degrees of editing efficacy for two FAD2 genes. Among the nine crRNAs, the LbCpf1-crRNA3 complexes showed the highest efficiency in soybean cotyledon protoplasts. The new screening systems of callus protoplasts from three soybeans have been successfully used to transfect GFP-tagged markers and CRISPR/LbCpf1 RNPs. The callus protoplasts confirm that the LbCpf1-crRNA3 complex is an active crRNA for LbCpf1 to edit two FAD2 genes similar to cotyledon protoplasts. These results demonstrate that soybean callus protoplast-based CRISPR/crRNA selection is a new and practical tool to screen the efficacy of crRNAs and a prerequisite for progressive regeneration of the edited soybean.


Assuntos
Repetições Palindrômicas Curtas Agrupadas e Regularmente Espaçadas , Edição de Genes/métodos , Glycine max/citologia , Glycine max/genética , Ribonucleoproteínas/genética , Proteínas de Bactérias/genética , Proteínas Associadas a CRISPR/genética , Cotilédone/genética , Endodesoxirribonucleases/genética , Plantas Geneticamente Modificadas , Protoplastos/citologia , RNA Guia de Cinetoplastídeos , Reprodutibilidade dos Testes
6.
BMC Plant Biol ; 20(1): 11, 2020 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-31910821

RESUMO

BACKGROUND: NAD kinases (NADKs) are the only known enzymes that directly phosphorylate NAD(H) to generate NADP(H) in different subcellular compartments. They participate in multiple life activities, such as modulating the NADP/NAD ratio, maintaining the intracellular redox balance and responding to environmental stresses. However, the functions of individual NADK in plants are still under investigation. Here, a rice NADK, namely, OsNADK1, was identified, and its functions in plant growth regulation and stress tolerance were analysed by employing a series of transgenic plant lines. RESULTS: OsNADK1 is a cytosol-localized NADK in rice. It was expressed in all rice tissues examined, and its transcriptional expression could be stimulated by a number of environmental stress treatments. Compared with wild-type (WT) rice, the mutant plant osnadk1 in which OsNADK1 was knocked out was a dwarf at the heading stage and had decreased NADP(H)/NAD(H), ascorbic acid (ASA)/dehydroascorbate (DHA) and reduced glutathione (GSH)/oxidized glutathione (GSSG) ratios, which led to increased oxidation states in the rice cells and sensitivity to drought. Moreover, certain stress-related genes showed differential expression patterns in osnadk1 under both normal growth and drought-stress conditions compared with WT. Among these genes, OsDREB1B and several WRKY family transcription factors, e.g., OsWRKY21 and OsWRKY42, showed correlated co-expression patterns with OsNADK1 in osnadk1 and the plants overexpressing or underexpressing OsNADK1, implying roles for these transcription factors in OsNADK1-mediated processes. In addition, overexpression of OsNADK1 enhanced the drought tolerance of rice plants, whereas loss of function of the gene reduced the tolerance. Furthermore, the proline content was dramatically increased in the leaves of the OsNADK1-overexpressing lines under drought conditions. CONCLUSIONS: Altogether, the results suggest that an OsNADK1-mediated intracellular redox balance is involved in the tolerance of rice plants to drought.


Assuntos
Secas , NAD , Oryza/genética , Fosfotransferases (Aceptor do Grupo Álcool) , Estresse Fisiológico/genética , Clonagem Molecular/métodos , Citoplasma/metabolismo , Regulação da Expressão Gênica de Plantas , NAD/genética , NAD/metabolismo , Oryza/metabolismo , Oxirredução , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Proteínas de Plantas/genética , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo , Prolina/metabolismo , Protoplastos/citologia , Protoplastos/metabolismo , Transcriptoma
7.
BMC Plant Biol ; 20(1): 555, 2020 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-33302867

RESUMO

BACKGROUND: The degradation of intracellular proteins plays an essential role in plant responses to stressful environments. ClpS1 and E3 ubiquitin ligase function as adaptors for selecting target substrates in caseinolytic peptidase (Clp) proteases pathways and the 26S proteasome system, respectively. Currently, the role of E3 ubiquitin ligase in the plant immune response to pathogens is well defined. However, the role of ClpS1 in the plant immune response to pathogens remains unknown. RESULTS: Here, wheat (Triticum aestivum) ClpS1 (TaClpS1) was studied and resulted to encode 161 amino acids, containing a conserved ClpS domain and a chloroplast transit peptide (1-32 aa). TaClpS1 was found to be specifically localized in the chloroplast when expressed transiently in wheat protoplasts. The transcript level of TaClpS1 in wheat was significantly induced during infection by Puccinia striiformis f. sp. tritici (Pst). Knockdown of TaClpS1 via virus-induced gene silencing (VIGS) resulted in an increase in wheat resistance against Pst, accompanied by an increase in the hypersensitive response (HR), accumulation of reactive oxygen species (ROS) and expression of TaPR1 and TaPR2, and a reduction in the number of haustoria, length of infection hypha and infection area of Pst. Furthermore, heterologous expression of TaClpS1 in Nicotiana benthamiana enhanced the infection by Phytophthora parasitica. CONCLUSIONS: These results suggest that TaClpS1 negatively regulates the resistance of wheat to Pst.


Assuntos
Resistência à Doença/genética , Regulação da Expressão Gênica de Plantas , Doenças das Plantas/genética , Proteínas de Plantas/genética , Triticum/genética , Sequência de Aminoácidos , Cloroplastos/genética , Cloroplastos/metabolismo , Interações Hospedeiro-Patógeno , Filogenia , Doenças das Plantas/microbiologia , Folhas de Planta/genética , Folhas de Planta/metabolismo , Folhas de Planta/microbiologia , Proteínas de Plantas/classificação , Protoplastos/citologia , Protoplastos/metabolismo , Puccinia/fisiologia , Espécies Reativas de Oxigênio/metabolismo , Plântula/genética , Plântula/metabolismo , Plântula/microbiologia , Homologia de Sequência de Aminoácidos , Nicotiana/citologia , Nicotiana/metabolismo , Triticum/metabolismo , Triticum/microbiologia
8.
BMC Plant Biol ; 20(1): 549, 2020 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-33287709

RESUMO

BACKGROUND: Nitrate plays an important role in grapevines vegetative and reproductive development. However, how grapevines uptake, translocate and utilize nitrate and the molecular mechanism still remains to be investigated. RESULTS: In this study, we report the functional characterization of VvNPF6.5, a member of nitrate transporter 1/peptide transporter family (NRT1/PTR/NPF) in Vitis vinifera. Subcellular localization in Arabidopsis protoplasts indicated that VvNPF6.5 is plasma membrane localized. Quantitative RT-PCR analysis indicated that VvNPF6.5 is expressed predominantly in roots and stems and its expression is rapidly induced by nitrate. Functional characterization using cRNA-injected Xenopus laevis oocytes showed that VvNPF6.5 uptake nitrate in a pH dependent way and function as a dual-affinity nitrate transporter involved in both high- and low-affinity nitrate uptake. Further ectopic expression of VvNPF6.5 in Arabidopsis resulted in more 15NO3- accumulation in shoots and roots and significantly improved nitrogen use efficiency (NUE). Moreover, VvNPF6.5 might participate in the nitrate signaling by positively regulating the expression of primary nitrate response genes. CONCLUSION: Our results suggested that VvNPF6.5 encodes a pH-dependent, dual-affinity nitrate transporter. VvNPF6.5 regulates nitrate uptake and allocation in grapevines and is involved in primary nitrate response.


Assuntos
Proteínas de Transporte de Ânions/genética , Arabidopsis/genética , Nitratos/metabolismo , Nitrogênio/metabolismo , Proteínas de Plantas/genética , Vitis/genética , Animais , Proteínas de Transporte de Ânions/metabolismo , Arabidopsis/citologia , Arabidopsis/metabolismo , Transporte Biológico/genética , Expressão Ectópica do Gene , Feminino , Regulação da Expressão Gênica de Plantas , Transportadores de Nitrato , Oócitos/metabolismo , Proteínas de Plantas/metabolismo , Plantas Geneticamente Modificadas , Protoplastos/citologia , Protoplastos/metabolismo , Transgenes/genética , Vitis/metabolismo , Xenopus laevis
9.
Biotechnol Bioeng ; 117(6): 1696-1709, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-32100874

RESUMO

A barrier to cost-efficient biomanufacturing is the instability of engineered genetic elements, such as plasmids. Instability can also manifest at the whole-genome level, when fungal dikaryons revert to parental species due to nuclear segregation during cell division. Here, we show that by encapsulating Saccharomyces cerevisiae-Pichia stipitis dikaryons in an alginate matrix, we can limit cell division and preserve their expanded metabolic capabilities. As a proxy to cellulosic ethanol production, we tested the capacity of such cells to carry out ethanologenic fermentation of glucose and xylose, examining substrate use, ploidy, and cell viability in relation to planktonic fusants, as well as in relation to planktonic and encapsulated cell cultures consisting of mixtures of these species. Glucose and xylose consumption and ethanol production by encapsulated dikaryons were greater than planktonic controls. Simultaneous co-fermentation did not occur; rather the order and kinetics of glucose and xylose catabolism by encapsulated dikaryons were similar to cultures where the two species were encapsulated together. Over repeated cycles of fed-batch culture, encapsulated S. cerevisiae-P. stipitis fusants exhibited a dramatic increase in genomic stability, relative to planktonic fusants. Encapsulation also increased the stability of antibiotic-resistance plasmids used to mark each species and preserved a fixed ratio of S. cerevisiae to P. stipitis cells in mixed cultures. Our data demonstrate how encapsulating cells in an extracellular matrix restricts cell division and, thereby, preserves the stability and biological activity of entities ranging from genomes to plasmids to mixed populations, each of which can be essential to cost-efficient biomanufacturing.


Assuntos
Alginatos/química , Células Imobilizadas/citologia , Protoplastos/citologia , Saccharomyces cerevisiae/citologia , Saccharomycetales/citologia , Materiais Biocompatíveis/química , Divisão Celular , Células Imobilizadas/metabolismo , Protoplastos/metabolismo , Saccharomyces cerevisiae/metabolismo , Saccharomycetales/metabolismo
10.
Int J Mol Sci ; 21(12)2020 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-32545519

RESUMO

Plants are sessile organisms that have a remarkable developmental plasticity, which ensures their optimal adaptation to environmental stresses. Plant cell totipotency is an extreme example of such plasticity, whereby somatic cells have the potential to form plants via direct shoot organogenesis or somatic embryogenesis in response to various exogenous and/or endogenous signals. Protoplasts provide one of the most suitable systems for investigating molecular mechanisms of totipotency, because they are effectively single cell populations. In this review, we consider the current state of knowledge of the mechanisms that induce cell proliferation from individual, differentiated somatic plant cells. We highlight initial explant metabolic status, ploidy level and isolation procedure as determinants of successful cell reprogramming. We also discuss the importance of auxin signalling and its interaction with stress-regulated pathways in governing cell cycle induction and further stages of plant cell totipotency.


Assuntos
Células do Mesofilo/citologia , Protoplastos/citologia , Células-Tronco Totipotentes/citologia , Diferenciação Celular , Proliferação de Células , Reprogramação Celular , Fenômenos Fisiológicos Vegetais , Ploidias , Transdução de Sinais
11.
BMC Biotechnol ; 19(1): 36, 2019 06 17.
Artigo em Inglês | MEDLINE | ID: mdl-31208390

RESUMO

BACKGROUND: CRISPR/Cas9 is widely used for precise genetic editing in various organisms. CRISPR/Cas9 editing may in many plants be hampered by the presence of complex and high ploidy genomes and inefficient or poorly controlled delivery of the CRISPR/Cas9 components to gamete cells or cells with regenerative potential. Optimized strategies and methods to overcome these challenges are therefore in demand. RESULTS: In this study we investigated the feasibility of improving CRISPR/Cas9 editing efficiency by Fluorescence Activated Cell Sorting (FACS) of protoplasts. We used Agrobacterium infiltration in leaves of Nicotiana benthamiana for delivery of viral replicons for high level expression of gRNAs designed to target two loci in the genome, NbPDS and NbRRA, together with the Cas9 nuclease in fusion with the 2A self-splicing sequence and GFP (Cas9-2A-GFP). Protoplasts isolated from the infiltrated leaves were then subjected to FACS for selection of GFP enriched protoplast populations. This procedure resulted in a 3-5 fold (from 20 to 30% in unsorted to more than 80% in sorted) increase in mutation frequencies as evidenced by restriction enzyme analysis and the Indel Detection by Amplicon Analysis, which allows for high throughput profiling and quantification of the generated mutations. CONCLUSIONS: FACS of protoplasts expressing GFP tagged CRISPR/Cas9, delivered through A. tumefaciens leaf infiltration, facilitated clear CRISPR/Cas9 mediated mutation enrichment in selected protoplast populations.


Assuntos
Sistemas CRISPR-Cas , Edição de Genes/métodos , Proteínas de Fluorescência Verde/metabolismo , Nicotiana/metabolismo , Folhas de Planta/metabolismo , Protoplastos/metabolismo , Citometria de Fluxo , Fluorescência , Proteínas de Fluorescência Verde/genética , Microscopia de Fluorescência , Mutação , Folhas de Planta/citologia , Folhas de Planta/genética , Plantas Geneticamente Modificadas , Protoplastos/citologia , Nicotiana/citologia , Nicotiana/genética
12.
Int J Mol Sci ; 20(7)2019 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-30987084

RESUMO

Increasing usage of gold nanoparticles (AuNPs) in different industrial areas inevitably leads to their release into the environment. Thus, living organisms, including plants, may be exposed to a direct contact with nanoparticles (NPs). Despite the growing amount of research on this topic, our knowledge about NPs uptake by plants and their influence on different developmental processes is still insufficient. The first physical barrier for NPs penetration to the plant body is a cell wall which protects cytoplasm from external factors and environmental stresses. The absence of a cell wall may facilitate the internalization of various particles including NPs. Our studies have shown that AuNPs, independently of their surface charge, did not cross the cell wall of Arabidopsis thaliana (L.) roots. However, the research carried out with using light and transmission electron microscope revealed that AuNPs with different surface charge caused diverse changes in the root's histology and ultrastructure. Therefore, we verified whether this is only the wall which protects cells against particles penetration and for this purpose we used protoplasts culture. It has been shown that plasma membrane (PM) is not a barrier for positively charged (+) AuNPs and negatively charged (-) AuNPs, which passage to the cell.


Assuntos
Arabidopsis/citologia , Arabidopsis/crescimento & desenvolvimento , Nanopartículas Metálicas/química , Raízes de Plantas/citologia , Raízes de Plantas/crescimento & desenvolvimento , Protoplastos/metabolismo , Arabidopsis/ultraestrutura , Parede Celular/metabolismo , Nanopartículas Metálicas/ultraestrutura , Raízes de Plantas/ultraestrutura , Protoplastos/citologia , Protoplastos/ultraestrutura , Propriedades de Superfície
13.
Int J Mol Sci ; 20(18)2019 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-31540359

RESUMO

Effector proteins play an important role in the virulence of plant pathogens such as phytoplasma, which are the causative agents of hundreds of different plant diseases. The plant hosts comprise economically relevant crops such as apples (Malus × domestica), which can be infected by 'Candidatus Phytoplasma mali' (P. mali), a highly genetically dynamic plant pathogen. As the result of the genetic and functional analyses in this study, a new putative P. mali effector protein was revealed. The so-called "Protein in Malus Expressed 2" (PME2), which is expressed in apples during P. mali infection but not in the insect vector, shows regional genetic differences. In a heterologous expression assay using Nicotiana benthamiana and Nicotiana occidentalis mesophyll protoplasts, translocation of both PME2 variants in the cell nucleus was observed. Overexpression of the effector protein affected cell integrity in Nicotiana spp. protoplasts, indicating a potential role of this protein in pathogenic virulence. Interestingly, the two genetic variants of PME2 differ regarding their potential to manipulate cell integrity. However, the exact function of PME2 during disease manifestation and symptom development remains to be further elucidated. Aside from the first description of the function of a novel effector of P. mali, the results of this study underline the necessity for a more comprehensive description and understanding of the genetic diversity of P. mali as an indispensable basis for a functional understanding of apple proliferation disease.


Assuntos
Proteínas de Bactérias/genética , Malus/microbiologia , Nicotiana/microbiologia , Phytoplasma/fisiologia , Doenças das Plantas/microbiologia , Sequência de Aminoácidos , Proteínas de Bactérias/análise , Proteínas de Bactérias/metabolismo , Sobrevivência Celular , Expressão Gênica , Interações Hospedeiro-Patógeno , Malus/citologia , Phytoplasma/química , Phytoplasma/genética , Phytoplasma/patogenicidade , Protoplastos/citologia , Protoplastos/microbiologia , Alinhamento de Sequência , Nicotiana/citologia , Fatores de Virulência/análise , Fatores de Virulência/genética , Fatores de Virulência/metabolismo
14.
Int J Mol Sci ; 20(21)2019 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-31661801

RESUMO

Oil palm (Elaeis guineensis, Jacq.) is a prominent vegetable-oil-yielding crop. Cultivating high-yielding oil palm with improved traits is a pre-requisite to meet the increasing demands of palm oil consumption. However, tissue culture and biotechnological approaches can resolve these concerns. Over the past three decades, significant research has been carried out to develop tissue culture and genetic transformation protocols for oil palm. Somatic embryogenesis is an efficient platform for the micropropagation of oil palm on a large scale. In addition, various genetic transformation techniques, including microprojectile bombardment, Agrobacterium tumefaciens mediated, Polyethylene glycol mediated mediated, and DNA microinjection, have been developed by optimizing various parameters for the efficient genetic transformation of oil palm. This review mainly emphasizes the methods established for in vitro propagation and genetic transformation of oil palm. Finally, we propose the application of the genome editing tool CRISPR/Cas9 to improve the various traits in this oil yielding crop.


Assuntos
Arecaceae/crescimento & desenvolvimento , Arecaceae/genética , Transformação Genética , Agrobacterium tumefaciens/genética , Agrobacterium tumefaciens/metabolismo , Arecaceae/embriologia , Sistemas CRISPR-Cas/genética , Edição de Genes/métodos , Microinjeções/métodos , Óleo de Palmeira/economia , Técnicas de Embriogênese Somática de Plantas/métodos , Polietilenoglicóis/química , Polietilenoglicóis/farmacologia , Protoplastos/citologia , Protoplastos/efeitos dos fármacos , Técnicas de Cultura de Tecidos
15.
Mol Cell ; 39(2): 282-91, 2010 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-20605502

RESUMO

RNA-induced silencing complexes (RISCs) play central roles in posttranscriptional gene silencing. In plants, the mechanism of RISC assembly has remained elusive due to the lack of cell-free systems that recapitulate the process. In this report, we demonstrate that plant AGO1 protein synthesized by in vitro translation using an extract of evacuolated tobacco protoplasts incorporates synthetic small interfering RNA (siRNA) and microRNA (miRNA) duplexes to form RISCs that sequester the single-stranded siRNA guide strand and miRNA strand, respectively. The formed RISCs were able to recognize and cleave the complementary target RNAs. In this system, the siRNA duplex was incorporated into HSP90-bound AGO1, and subsequent removal of the passenger strand was triggered by ATP hydrolysis by HSP90. Removal of the siRNA passenger strand required the ribonuclease activity of AGO1, while that of the miRNA star strand did not. Based on these results, the mechanism of plant RISC formation is discussed.


Assuntos
Fatores de Iniciação em Eucariotos/metabolismo , Proteínas de Choque Térmico HSP90/metabolismo , Complexos Multiproteicos/metabolismo , Nicotiana/metabolismo , Proteínas de Plantas/metabolismo , Complexo de Inativação Induzido por RNA/metabolismo , Sequência de Bases , Sistema Livre de Células/metabolismo , Fatores de Iniciação em Eucariotos/genética , Inativação Gênica/fisiologia , Proteínas de Choque Térmico HSP90/genética , MicroRNAs/genética , MicroRNAs/metabolismo , Dados de Sequência Molecular , Complexos Multiproteicos/genética , Proteínas de Plantas/genética , Protoplastos/citologia , Protoplastos/metabolismo , RNA de Plantas/genética , RNA de Plantas/metabolismo , RNA Interferente Pequeno/genética , RNA Interferente Pequeno/metabolismo , Complexo de Inativação Induzido por RNA/genética , Nicotiana/citologia , Nicotiana/genética
16.
BMC Bioinformatics ; 18(1): 176, 2017 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-28315633

RESUMO

BACKGROUND: Manual assessment and evaluation of fluorescent micrograph cell experiments is time-consuming and tedious. Automated segmentation pipelines can ensure efficient and reproducible evaluation and analysis with constant high quality for all images of an experiment. Such cell segmentation approaches are usually validated and rated in comparison to manually annotated micrographs. Nevertheless, manual annotations are prone to errors and display inter- and intra-observer variability which influence the validation results of automated cell segmentation pipelines. RESULTS: We present a new approach to simulate fluorescent cell micrographs that provides an objective ground truth for the validation of cell segmentation methods. The cell simulation was evaluated twofold: (1) An expert observer study shows that the proposed approach generates realistic fluorescent cell micrograph simulations. (2) An automated segmentation pipeline on the simulated fluorescent cell micrographs reproduces segmentation performances of that pipeline on real fluorescent cell micrographs. CONCLUSION: The proposed simulation approach produces realistic fluorescent cell micrographs with corresponding ground truth. The simulated data is suited to evaluate image segmentation pipelines more efficiently and reproducibly than it is possible on manually annotated real micrographs.


Assuntos
Algoritmos , Microscopia de Fluorescência , Animais , Linfócitos B/citologia , Linfócitos B/metabolismo , Forma Celular , Processamento de Imagem Assistida por Computador , Macrófagos/citologia , Macrófagos/metabolismo , Camundongos , Camundongos Endogâmicos C57BL , Protoplastos/citologia , Protoplastos/metabolismo
17.
BMC Biotechnol ; 17(1): 29, 2017 03 14.
Artigo em Inglês | MEDLINE | ID: mdl-28292294

RESUMO

BACKGROUND: Cassava (Manihot esculenta Crantz) is a major crop extensively cultivated in the tropics as both an important source of calories and a promising source for biofuel production. Although stable gene expression have been used for transgenic breeding and gene function study, a quick, easy and large-scale transformation platform has been in urgent need for gene functional characterization, especially after the cassava full genome was sequenced. METHODS: Fully expanded leaves from in vitro plantlets of Manihot esculenta were used to optimize the concentrations of cellulase R-10 and macerozyme R-10 for obtaining protoplasts with the highest yield and viability. Then, the optimum conditions (PEG4000 concentration and transfection time) were determined for cassava protoplast transient gene expression. In addition, the reliability of the established protocol was confirmed for subcellular protein localization. RESULTS: In this work we optimized the main influencing factors and developed an efficient mesophyll protoplast isolation and PEG-mediated transient gene expression in cassava. The suitable enzyme digestion system was established with the combination of 1.6% cellulase R-10 and 0.8% macerozyme R-10 for 16 h of digestion in the dark at 25 °C, resulting in the high yield (4.4 × 107 protoplasts/g FW) and vitality (92.6%) of mesophyll protoplasts. The maximum transfection efficiency (70.8%) was obtained with the incubation of the protoplasts/vector DNA mixture with 25% PEG4000 for 10 min. We validated the applicability of the system for studying the subcellular localization of MeSTP7 (an H+/monosaccharide cotransporter) with our transient expression protocol and a heterologous Arabidopsis transient gene expression system. CONCLUSION: We optimized the main influencing factors and developed an efficient mesophyll protoplast isolation and transient gene expression in cassava, which will facilitate large-scale characterization of genes and pathways in cassava.


Assuntos
Perfilação da Expressão Gênica/métodos , Melhoramento Genético/métodos , Manihot/genética , Proteínas de Plantas/genética , Engenharia de Proteínas/métodos , Protoplastos/citologia , Ensaios de Triagem em Larga Escala , Células do Mesofilo/citologia , Polietilenoglicóis
18.
Development ; 141(8): 1660-70, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24715456

RESUMO

Many differentiated plant cells can dedifferentiate into stem cells, reflecting the remarkable developmental plasticity of plants. In the moss Physcomitrella patens, cells at the wound margin of detached leaves become reprogrammed into stem cells. Here, we report that two paralogous P. patens WUSCHEL-related homeobox 13-like (PpWOX13L) genes, homologs of stem cell regulators in flowering plants, are transiently upregulated and required for the initiation of cell growth during stem cell formation. Concordantly, Δppwox13l deletion mutants fail to upregulate genes encoding homologs of cell wall loosening factors during this process. During the moss life cycle, most of the Δppwox13l mutant zygotes fail to expand and initiate an apical stem cell to form the embryo. Our data show that PpWOX13L genes are required for the initiation of cell growth specifically during stem cell formation, in analogy to WOX stem cell functions in seed plants, but using a different cellular mechanism.


Assuntos
Bryopsida/citologia , Bryopsida/genética , Genes de Plantas/genética , Folhas de Planta/citologia , Proteínas de Plantas/genética , Protoplastos/citologia , Células-Tronco/citologia , Sequência de Aminoácidos , Arabidopsis/metabolismo , Proteínas de Arabidopsis/metabolismo , Bryopsida/crescimento & desenvolvimento , Proliferação de Células , Parede Celular/genética , Deleção de Genes , Regulação da Expressão Gênica de Plantas , Meristema/citologia , Meristema/crescimento & desenvolvimento , Dados de Sequência Molecular , Folhas de Planta/metabolismo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Protoplastos/metabolismo , Regeneração , Células-Tronco/metabolismo , Regulação para Cima/genética , Zigoto/citologia , Zigoto/crescimento & desenvolvimento
19.
Plant Cell ; 26(2): 754-64, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24532591

RESUMO

Alternative splicing (AS) is an important regulatory process that leads to the creation of multiple RNA transcripts from a single gene. Alternative transcripts often carry premature termination codons (PTCs), which trigger nonsense-mediated decay (NMD), a cytoplasmic RNA degradation pathway. However, intron retention, the most prevalent AS event in plants, often leads to PTC-carrying splice variants that are insensitive to NMD; this led us to question the fate of these special RNA variants. Here, we present an innovative approach to monitor and characterize endogenous mRNA splice variants within living plant cells. This method combines standard confocal laser scanning microscopy for molecular beacon detection with a robust statistical pipeline for sample comparison. We demonstrate this technique on the localization of NMD-insensitive splice variants of two Arabidopsis thaliana genes, RS2Z33 and the SEF factor. The experiments reveal that these intron-containing splice variants remain within the nucleus, which allows them to escape the NMD machinery. Moreover, fluorescence recovery after photobleaching experiments in the nucleoplasm show a decreased mobility of intron-retained mRNAs compared with fully spliced RNAs. In addition, differences in mobility were observed for an mRNA dependent on its origin from an intron-free or an intron-containing gene.


Assuntos
Processamento Alternativo/genética , Arabidopsis/genética , Núcleo Celular/metabolismo , Imagem Molecular/métodos , Degradação do RNAm Mediada por Códon sem Sentido/genética , Células Vegetais/metabolismo , Arabidopsis/citologia , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Sobrevivência Celular , Eletroporação , Recuperação de Fluorescência Após Fotodegradação , Protoplastos/citologia , Protoplastos/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Transfecção
20.
Proc Natl Acad Sci U S A ; 111(45): 16196-201, 2014 Nov 11.
Artigo em Inglês | MEDLINE | ID: mdl-25355908

RESUMO

Nitric oxide (NO), an active signaling molecule in plants, is involved in numerous physiological processes and adaptive responses to environmental stresses. Under high-salt conditions, plants accumulate NO quickly, and reorganize Na(+) and K(+) contents. However, the molecular connection between NO and ion homeostasis is largely unknown. Here, we report that NO lowers K(+) channel AKT1-mediated plant K(+) uptake by modulating vitamin B6 biosynthesis. In a screen for Arabidopsis NO-hypersensitive mutants, we isolated sno1 (sensitive to nitric oxide 1), which is allelic to the previously noted mutant sos4 (salt overly sensitive 4) that has impaired Na(+) and K(+) contents and overproduces pyridoxal 5'-phosphate (PLP), an active form of vitamin B6. We showed that NO increased PLP and decreased K(+) levels in plant. NO induced SNO1 gene expression and enzyme activity, indicating that NO-triggered PLP accumulation mainly occurs through SNO1-mediated vitamin B6 salvage biosynthetic pathway. Furthermore, we demonstrated that PLP significantly repressed the activity of K(+) channel AKT1 in the Xenopus oocyte system and Arabidopsis root protoplasts. Together, our results suggest that NO decreases K(+) absorption by promoting the synthesis of vitamin B6 PLP, which further represses the activity of K(+) channel AKT1 in Arabidopsis. These findings reveal a previously unidentified pivotal role of NO in modulating the homeostasis of vitamin B6 and potassium nutrition in plants, and shed light on the mechanism of NO in plant acclimation to environmental changes.


Assuntos
Arabidopsis/metabolismo , Homeostase/fisiologia , Raízes de Plantas/metabolismo , Potássio/metabolismo , Vitamina B 6/biossíntese , Animais , Arabidopsis/citologia , Arabidopsis/genética , Proteínas de Arabidopsis , Transporte de Íons/fisiologia , Óxido Nítrico/genética , Óxido Nítrico/metabolismo , Oócitos , Raízes de Plantas/citologia , Canais de Potássio , Protoplastos/citologia , Protoplastos/metabolismo , Fosfato de Piridoxal/genética , Fosfato de Piridoxal/metabolismo , Vitamina B 6/genética , Xenopus laevis
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