Concordance among lacustrine communities are low and inconsistent in the conterminous United States.

Concordance occurs when two or more biological groups are correlated to each other. Examining the degree of concordance between communities has been a central goal in ecology. However, few studies have assessed the levels of community concordance at large spatial scales. We used a dataset obtained by the National Lakes Assessment (United States Environmental Protection Agency) to evaluate whether (i) the levels of concordance between aquatic communities were higher at the continental scale than within individual ecoregions of the United States and (ii) whether the levels of concordance between phytoplankton and zooplankton were higher than those between the plankton and macroinvertebrates communities. At the continental scale, the levels of concordance between different pairs of aquatic communities were low and did not exceed those within the ecoregions. Furthermore, levels of concordance varied considerably among ecoregions. Our results suggest that interactions between aquatic communities likely determined concordance patterns; however, the expectation of higher levels of concordance between the phytoplankton and zooplankton communities than between them and the macroinvertebrates community was not supported. The consistently low and variable levels of concordance suggest that using surrogate groups is not recommendable for monitoring lakes in the United States, both at the continental and regional scales. According to our results, the prospect of using the surrogacy approach was low even for aquatic communities that are highly interactive or driven by similar environmental factors.

Catchment scale deforestation increases the uniqueness of subtropical stream communities.

Local communities and individual species jointly contribute to the overall beta diversity in metacommunities. However, it is mostly unknown whether the local contribution (LCBD) and the species contribution (SCBD) to beta diversity can be predicted by local and regional environmental characteristics and by species traits and taxonomic relatedness, respectively. We investigated the LCBD and SCBD of stream benthic diatoms and insects along a gradient of land use intensification, ranging from streams in pristine forests to agricultural catchments in southeast subtropical Brazil. We expected that the LCBD would be negatively related to forest cover and positively related to the most unique streams in terms of environmental characteristics and land use (hereafter environmental and land use uniqueness, respectively). We also expected that species with a high SCBD would occur at sites with reduced forest cover. We found that the LCBD of diatoms and insects was negatively related to forest cover. The LCBD of insects was also positively related to environmental and land use uniqueness. As forest cover was negatively related to uniqueness in land use, biologically unique streams were those that deviated from the typical regional land cover. We also found that diatom traits, insect traits, and taxonomic relatedness partly explained SCBD. Furthermore, the SCBD of diatoms was positively correlated with forest cover, but the inverse was found for insects. We showed that deforestation creates novel and unique communities in subtropical streams and that species that contribute the most to beta diversity can occur at opposite ends of a land use gradient.

Negative effect of turbidity on prey capture for both visual and non-visual aquatic predators.

Turbidity plays an important role in aquatic predator-prey interactions. Increases in turbidity are expected to reduce prey capture rates, especially for visually oriented predators. However, there is also evidence indicating that turbidity may have little or no effect on predation rates. Here, we conducted a systematic review and meta-analysis of the relationship between turbidity and capture rate. We explored possible sources of heterogeneity in the effect sizes (capture strategy, predator's body size, relative eye size and turbidity range in the experiments) while controlling for the dependence among effects sizes and phylogenetic relationships among predator species. We found a consistent negative effect of turbidity on prey capture and that turbidity range (manipulated in the experiments) was the main factor accounting for between-study variation in effect sizes. Also, capture rates of both visually and non-visually oriented predators decreased with an increase in turbidity. In addition, for visually oriented fish predators, the relative eye size did not influence the effect sizes. Despite the paucity of studies for some groups of aquatic predators (mainly in tropical regions), we provide corroborative evidence that turbidity is a critical environmental factor controlling predator-prey interactions. This result is especially relevant considering that changes in turbidity is a human-induced pervasive environmental alteration resulted from, among other mechanisms, runoff after deforestation, eutrophication or oligotrophication in reservoir cascades, which imply changes in predator-prey interactions.

Correlates of different facets and components of beta diversity in stream organisms.

Recently, community ecology has emphasized the multi-facetted aspects of biological diversity by linking species traits and the environment. Here, we explored environmental correlates of taxonomically-based and traits-based compositional distances using a comprehensive data set of diatom and macroinvertebrate communities. We also explored the responses of different beta diversity components (i.e., overall beta diversity, turnover, and nestedness) of beta diversity facets (i.e., taxonomically and traits-based beta diversity) to environmental distances. Partial Mantel tests were used to test the relationships between beta diversity and environmental distance (while controlling for spatial distances). Taxonomically-based beta diversity varied much more than traits-based beta diversity, indicating strong functional convergence. We found that taxonomically-based beta diversity was largely driven by the turnover component. However, the nestedness component contributed more to overall traits-based beta diversity than the turnover component. Taxonomically-based beta diversity was significantly correlated with environmental distances for both diatoms and macroinvertebrates. Thus, we found support for the role of environmental filtering as a driver of community dissimilarities of rather different biological groups. However, the strength of these relationships between beta diversity and environmental distances varied depending on the biological group, facet, component, and the way which the environmental variables were selected to calculate the explanatory (distance) matrix. Our results indicated that both taxonomically and traits-based approaches are still needed to better understand patterns and mechanisms affecting the organization of biological communities in streams. This is because different facets of biological communities may be driven by different mechanisms.

Experiments reveal that environmental heterogeneity increases species richness, but they are rarely designed to detect the underlying mechanisms.

Environmental heterogeneity (EH) plays a central role in hypotheses used to explain distributions of species diversity. Here, we conducted a meta-analysis of species richness-EH (S-EH) relationships reported for experimental or quasi-experimental studies. We controlled for the lack of independence among effect sizes and additionally performed a cumulative meta-analysis. We found that EH has a consistent positive effect on species richness. This pattern was consistent across spatial scales, methodological issues and among taxonomic groups and realms. Furthermore, our cumulative meta-analysis highlighted that a positive S-EH relationship has been evident for nearly two decades. However, experiments often did not deeply explore the mechanisms underlying the positive relationship between EH and species richness. Taken together, our results present a robust pattern for the S-EH relationship, but our understanding of the main mechanisms is still in its infancy.

Predicting occupancy and abundance by niche position, niche breadth and body size in stream organisms.

The regional occupancy and local abundance of species are thought to be strongly correlated to their body size, niche breadth and niche position. The strength of the relationships among these variables can also differ between different organismal groups. Here, we analyzed data on stream diatoms and insects from a high-latitude drainage basin to investigate these relationships. To generate measures of niche position and niche breadth for each species, we used sets of local environmental and catchment variables separately, applying the outlying mean index analysis. Beta regression and negative binomial generalized linear models were run to predict regional occupancy and mean local abundance, respectively. We found a positive occupancy-abundance relationship in both diatoms and insects, and that niche-based variables were the main predictors of variation in regional occupancy and local abundance. This finding was mainly due to local environmental niche position, whereas the effects of niche breadth on regional occupancy and local abundance were less important. We also found a relationship between body size and local abundance or regional occupancy of diatoms. Our results thus add to current macroecological research by emphasizing the strong importance of niche position rather than niche breadth and body size for regional occupancy and local abundance in rarely studied organisms (e.g., diatoms and insects) and ecosystems (i.e., wilderness streams).

Patterns of interactions of a large fish-parasite network in a tropical floodplain.

1. Describing and explaining the structure of species interaction networks is of paramount importance for community ecology. Yet much has to be learned about the mechanisms responsible for major patterns, such as nestedness and modularity in different kinds of systems, of which large and diverse networks are a still underrepresented and scarcely studied fraction. 2. We assembled information on fishes and their parasites living in a large floodplain of key ecological importance for freshwater ecosystems in the Paraná River basin in South America. The resulting fish-parasite network containing 72 and 324 species of fishes and parasites, respectively, was analysed to investigate the patterns of nestedness and modularity as related to fish and parasite features. 3. Nestedness was found in the entire network and among endoparasites, multiple-host life cycle parasites and native hosts, but not in networks of ectoparasites, single-host life cycle parasites and non-native fishes. All networks were significantly modular. Taxonomy was the major host's attribute influencing both nestedness and modularity: more closely related host species tended to be associated with more nested parasite compositions and had greater chance of belonging to the same network module. Nevertheless, host abundance had a positive relationship with nestedness when only native host species pairs of the same network module were considered for analysis. 4. These results highlight the importance of evolutionary history of hosts in linking patterns of nestedness and formation of modules in the network. They also show that functional attributes of parasites (i.e. parasitism mode and life cycle) and origin of host populations (i.e. natives versus non-natives) are crucial to define the relative contribution of these two network properties and their dependence on other ecological factors (e.g. host abundance), with potential implications for community dynamics and stability.

Estimating counterfactuals for evaluation of ecological and conservation impact: an introduction to matching methods.

Matching methods encompass non-parametric approaches to estimating counterfactual states through a rigorous selection of control units with similar characteristics to units submitted to an intervention. These methods enable comparisons between treated and control units in a way that facilitates understanding of causal relationships between interventions and outcomes. Matching methods have been used only recently in ecology and conservation biology, where such applications changed the way the field investigates causal questions, for example, in impact-evaluation studies. However, the strengths and limitations of matching methods are not well understood by most ecologists and environmental scientists. Herein, we review state-of-the-art matching methods aiming to help fill this gap in understanding. First, we present relevant theoretical concepts related to matching methods and related subjects such as counterfactual states and causation. Next, we propose guidelines and strategies for the application of matching methods in ecology and conservation biology. Finally, we discuss the possibilities for future applications of matching methods in the environmental sciences.

Spatio-temporal variation in water beetle assemblages across temperate freshwater ecosystems.

Ecological communities are structured by several mechanisms, including temporal, spatial and environmental factors. However, the simultaneous effects of these factors have rarely been studied. Here, we investigated their role on water beetle assemblages sampled over a period of 18 years. Water beetles were sampled in the spring of each year in lotic and lentic water bodies from mainland region of Kalmar and Öland Island in southeastern Sweden. We assessed how past assemblage structure, environmental factors and spatial variables correlated with current assemblage structure using a variation partitioning approach. We also tested for correlates of temporal beta diversity of water beetle assemblages with multiple regressions. We found that past water beetle assemblage structure explained current water beetle assemblage structure better than the environmental and spatial correlates. We also observed that temporal beta diversity of water beetle assemblages was mainly due to species gain rather than to species loss. Finally, environmental variables (e.g., hydroperiod, habitat size and hydrology) and timespan between sampling events explained part of temporal beta diversity and contribution of species loss to total assemblage dissimilarity variation. Despite the fact that most variation remained unexplained, we found that ecological factors that have been thought to be important for water beetle richness and abundance in past studies (e.g. water body size, water permanence, shore slope, and whether the water body is lentic or lotic) were also correlated to temporal beta diversity. From a conservation point of view, our study suggest that temporal variability of assemblage structure should be included in biological monitoring because of its potential to predict current assemblage structure.

Community size can affect the signals of ecological drift and niche selection on biodiversity.

Ecological drift can override the effects of deterministic niche selection on small populations and drive the assembly of some ecological communities. We tested this hypothesis with a unique data set sampled identically in 200 streams in two regions (tropical Brazil and boreal Finland) that differ in macroinvertebrate community size by fivefold. Null models allowed us to estimate the magnitude to which ß-diversity deviates from the expectation under a random assembly process while taking differences in richness and relative abundance into account, i.e., ß-deviation. We found that both abundance- and incidence-based ß-diversity was negatively related to community size only in Brazil. Also, ß-diversity of small tropical communities was closer to stochastic expectations compared with ß-diversity of large communities. We suggest that ecological drift may drive variation in some small communities by changing the expected outcome of niche selection, increasing the chances of species with low abundance and narrow distribution to occur in some communities. Habitat destruction, overexploitation, pollution, and reductions in connectivity have been reducing the size of biological communities. These environmental pressures might make smaller communities more vulnerable to novel conditions and render community dynamics more unpredictable. Incorporation of community size into ecological models should provide conceptual and applied insights into a better understanding of the processes driving biodiversity.

Competitive Effects Hinder the Recolonization of Native Species in Environments Densely Occupied by One Invasive Exotic Species.

The responses of native plants to competition with invasive plants depend mainly on the density of the invasive plants and on the ability of the native plants to compete for resources. In this study, we tested the influence of the invasive exotic Urochloa arrecta (Poaceae) on the early colonization of two native species (Pontederia cordata and Leersia hexandra) of aquatic macrophytes. Our hypotheses were (i) the competitive effects of U. arrecta on the native species P. cordata and L. hexandra are density-dependent and that (ii) these species respond differently to competitive interactions with the invasive species. We conducted the experiments in a greenhouse and in the field, in a tropical reservoir. The biomass of U. arrecta (ranging from 206.2 to 447.1 g) was manipulated in the greenhouse in trays with different densities. After the establishment of the invasive species, we added P. cordata and L. hexandra propagules to each tray. In the field, a propagule of P. cordata was planted in 36 sites with different densities of U. arrecta. The biomass and length of the natives and the biomass of the invasive species were measured in the greenhouse and in the field experiments. The biomass and length of the native plants decreased with increasing biomass of the exotic species in both experiments, showing that the competition between U. arrecta and native species depends on the density of the exotic species. The root:shoot ratio of L. hexandra decreased with increasing U. arrecta biomass, but the opposite occurred for P. cordata. These results indicate that native species exhibit different strategies of biomass allocation when interacting with U. arrecta. The strong competitive effects of U. arrecta and the different responses of the native species help to explain the reduced diversity of native macrophytes observed in sites colonized by U. arrecta. The results also suggest that in a scenario of dominance of exotic species, recolonization by native macrophytes is unlike to occur naturally and without human interventions that reduce the biomass of the exotic species.

Correlates of zooplankton beta diversity in tropical lake systems.

The changes in species composition between habitat patches (beta diversity) are likely related to a number of factors, including environmental heterogeneity, connectivity, disturbance and productivity. Here, we used data from aquatic environments in five Brazilian regions over two years and two seasons (rainy and dry seasons or high and low water level periods in floodplain lakes) in each year to test hypotheses underlying zooplankton beta diversity variation. The regions present different levels of hydrological connectivity, where three regions present lakes that are permanent and connected with the main river, while the water bodies of the other two regions consist of permanent lakes and temporary ponds, with no hydrological connections between them. We tested for relationships between zooplankton beta diversity and environmental heterogeneity, spatial extent, hydrological connectivity, seasonality, disturbance and productivity. Negative relationships were detected between zooplankton beta diversity and both hydrological connectivity and disturbance (periodic dry-outs). Hydrological connectivity is likely to affect beta diversity by facilitating dispersal between habitats. In addition, the harsh environmental filter imposed by disturbance selected for only a small portion of the species from the regional pool that were able to cope with periodic dry-outs (e.g., those with a high production of resting eggs). In summary, this study suggests that faunal exchange and disturbance play important roles in structuring local zooplankton communities.

Dispersal ability determines the role of environmental, spatial and temporal drivers of metacommunity structure.

Recently, community ecologists are focusing on the relative importance of local environmental factors and proxies to dispersal limitation to explain spatial variation in community structure. Albeit less explored, temporal processes may also be important in explaining species composition variation in metacommunities occupying dynamic systems. We aimed to evaluate the relative role of environmental, spatial and temporal variables on the metacommunity structure of different organism groups in the Upper Paraná River floodplain (Brazil). We used data on macrophytes, fish, benthic macroinvertebrates, zooplankton, periphyton, and phytoplankton collected in up to 36 habitats during a total of eight sampling campaigns over two years. According to variation partitioning results, the importance of predictors varied among biological groups. Spatial predictors were particularly important for organisms with comparatively lower dispersal ability, such as aquatic macrophytes and fish. On the other hand, environmental predictors were particularly important for organisms with high dispersal ability, such as microalgae, indicating the importance of species sorting processes in shaping the community structure of these organisms. The importance of watercourse distances increased when spatial variables were the main predictors of metacommunity structure. The contribution of temporal predictors was low. Our results emphasize the strength of a trait-based analysis and of better defining spatial variables. More importantly, they supported the view that "all-or-nothing" interpretations on the mechanisms structuring metacommunities are rather the exception than the rule.

Native macrophyte density and richness affect the invasiveness of a tropical poaceae species.

The role of the native species richness and density in ecosystem invasibility is a matter of concern for both ecologists and managers. We tested the hypothesis that the invasiveness of Urochloa arrecta (non-native in the Neotropics) is negatively affected by the species richness and abundance of native aquatic macrophytes in freshwater ecosystems. We first created four levels of macrophyte richness in a greenhouse (richness experiment), and we then manipulated the densities of the same native species in a second experiment (density experiment). When the native macrophytes were adults, fragments of U. arrecta were added, and their growth was assessed. Our results from the richness experiment corroborated the hypothesis of a negative relationship between the native species richness and the growth of U. arrecta, as measured by sprout length and root biomass. However, the resistance to invasion was not attributed to the presence of a particular native species with a greater competitive ability. In the density experiment, U. arrecta growth decreased significantly with an increased density of all five of the native species. Density strongly affected the performance of the Poaceae in a negative manner, suggesting that patches that are densely colonized by native macrophytes and less subject to disturbances will be more resistant to invasion than those that are poorly colonized and more commonly subjected to disturbances. Our density experiment also showed that some species exhibit a higher competitive ability than others (sampling effect). Although native richness and abundance clearly limit the colonization and establishment of U. arrecta, these factors cannot completely prevent the invasion of aquatic ecosystems by this Poaceae species.

Metacommunity structuring in stream networks: roles of dispersal mode, distance type, and regional environmental context.

Within a metacommunity, both environmental and spatial processes regulate variation in local community structure. The strength of these processes may vary depending on species traits (e.g., dispersal mode) or the characteristics of the regions studied (e.g., spatial extent, environmental heterogeneity). We studied the metacommunity structuring of three groups of stream macroinvertebrates differing in their overland dispersal mode (passive dispersers with aquatic adults; passive dispersers with terrestrial adults; active dispersers with terrestrial adults). We predicted that environmental structuring should be more important for active dispersers, because of their better ability to track environmental variability, and that spatial structuring should be more important for species with aquatic adults, because of stronger dispersal limitation. We sampled a total of 70 stream riffle sites in three drainage basins. Environmental heterogeneity was unrelated to spatial extent among our study regions, allowing us to examine the effects of these two factors on metacommunity structuring. We used partial redundancy analysis and Moran's eigenvector maps based on overland and watercourse distances to study the relative importance of environmental control and spatial structuring. We found that, compared with environmental control, spatial structuring was generally negligible, and it did not vary according to our predictions. In general, active dispersers with terrestrial adults showed stronger environmental control than the two passively dispersing groups, suggesting that the species dispersing actively are better able to track environmental variability. There were no clear differences in the results based on watercourse and overland distances. The variability in metacommunity structuring among basins was not related to the differences in the environmental heterogeneity and spatial extent. Our study emphasized that (1) environmental control is prevailing in stream metacommunities, (2) dispersal mode may have an important effect on metacommunity structuring, and (3) some factors other than spatial extent or environmental heterogeneity contributed to the differences among the basins.

Darwinian shortfalls in biodiversity conservation.

If we were to describe all the species on Earth and determine their distributions, we would solve the popularly termed 'Linnean' and 'Wallacean' shortfalls in biodiversity conservation. Even so, we would still be hindered by a 'Darwinian shortfall', that is, the lack of relevant phylogenetic information for most organisms. Overall, there are too few comprehensive phylogenies, large uncertainties in the estimation of divergence times, and, most critically, unknown evolutionary models linking phylogenies to relevant ecological traits and life history variation. Here, we discuss these issues and offer suggestions for further research to support evolutionary-based conservation planning.

A metacommunity framework for enhancing the effectiveness of biological monitoring strategies.

Because of inadequate knowledge and funding, the use of biodiversity indicators is often suggested as a way to support management decisions. Consequently, many studies have analyzed the performance of certain groups as indicator taxa. However, in addition to knowing whether certain groups can adequately represent the biodiversity as a whole, we must also know whether they show similar responses to the main structuring processes affecting biodiversity. Here we present an application of the metacommunity framework for evaluating the effectiveness of biodiversity indicators. Although the metacommunity framework has contributed to a better understanding of biodiversity patterns, there is still limited discussion about its implications for conservation and biomonitoring. We evaluated the effectiveness of indicator taxa in representing spatial variation in macroinvertebrate community composition in Atlantic Forest streams, and the processes that drive this variation. We focused on analyzing whether some groups conform to environmental processes and other groups are more influenced by spatial processes, and on how this can help in deciding which indicator group or groups should be used. We showed that a relatively small subset of taxa from the metacommunity would represent 80% of the variation in community composition shown by the entire metacommunity. Moreover, this subset does not have to be composed of predetermined taxonomic groups, but rather can be defined based on random subsets. We also found that some random subsets composed of a small number of genera performed better in responding to major environmental gradients. There were also random subsets that seemed to be affected by spatial processes, which could indicate important historical processes. We were able to integrate in the same theoretical and practical framework, the selection of biodiversity surrogates, indicators of environmental conditions, and more importantly, an explicit integration of environmental and spatial processes into the selection approach.

Distance decay of similarity in neotropical diatom communities.

BACKGROUND: The regression of similarity against distance unites several ecological phenomena, and thus provides a highly useful approach for illustrating the spatial turnover across sites. Our aim was to test whether the rates of decay in community similarity differ between diatom growth forms suggested to show different dispersal ability. We hypothesized that the diatom group with lower dispersal ability (i.e. periphyton) would show higher distance decay rates than a group with higher dispersal ability (i.e. plankton). METHODS/PRINCIPAL FINDINGS: Periphyton and phytoplankton samples were gathered at sites distributed over an area of approximately 800 km length in the Negro River, Amazon basin, Brazil, South America (3°08'00"S; 59°54'30"W). Distance decay relationships were then estimated using distance-based regressions, and the coefficients of these regressions were compared among the groups with different dispersal abilities to assess our predictions. We found evidence that different tributaries and reaches of the Negro River harbor different diatom communities. As expected, the rates of distance decay in community similarity were higher for periphyton than for phytoplankton indicating the lower dispersal ability of periphytic taxa. CONCLUSIONS/SIGNIFICANCE: Our study demonstrates that the comparison of distance decay relationships among taxa with similar ecological requirements, but with different growth form and thus dispersal ability provides a sound approach to evaluate the effects of dispersal ability on beta diversity patterns. Our results are also in line with the growing body of evidence indicating that microorganisms exhibit biogeographic patterns. Finally, we underscore that clumbing all microbial taxa into one group may be a flawed approach to test whether microbes exhibit biogeographic patterns.