Species boundaries of the whiptail catfish Rineloricaria (Siluriformes: Loricariidae) from the Paraíba do Sul River drainage, southeastern Brazil, with species redescriptions and description of a new species.

Species of the catfish genus Rineloricaria are common in the Paraíba do Sul River basin, in southeastern Brazil; here we present a revision of the taxonomic diversity and geographic distribution of the species of the genus inhabiting the basin, based on novel morphologic and molecular data. Five species delimitation methods based on cytochrome C oxidase subunit 1 nucleotide sequences yielded comparable molecular operational taxonomic units. The automatic barcode gap discovery, assemble species by automatic partitioning, barcode index number, and Bayesian implementation of the Poisson tree process methods supported the recognition of five evolutionary lineages. These taxonomic units were assigned to the previously described Rineloricaria nigricauda, Rineloricaria steindachneri, Rineloricaria zawadzkii, and Rineloricaria nudipectoris, and an additional undescribed species. R. zawadzkii was further divided into two intraspecific geographically structured lineages using the generalized mixed Yule coalescent delimitation method. A maximum likelihood phylogenetic analysis revealed that the five lineages from the Paraíba do Sul have closer relationships to different species from southern and southeastern Brazil (Ribeira de Iguape, Lagoa dos Patos, Uruguay, Paraguay, and Parana river basins) than to each other. Based on the analysis of lectotypes, recently collected material, and specimens from ichthyological collections, the poorly described R. nigricauda and R. steindachneri are redescribed following current descriptive standards. The undescribed species from the middle and upper Paraíba do Sul River basin is formally described. The description of a new species, along with the description of species boundaries in R. nigricauda and R. steindachneri, contributes to the knowledge of the ichthyofauna of the Paraíba do Sul River basin and adjacent coastal drainages of southeastern Brazil. An identification key for the species of Rineloricaria occurring in the Paraíba do Sul River basin is provided.

Bilateral genital asymmetry in livebearer fishes of the genus Phalloceros Eigenmann, 1907, with description of a new species from coastal drainages of southern Brazil (Cyprinodontiformes: Poeciliidae).

A new species of Phalloceros is described from the Tijucas, Maruim, Aririú, Cubatão do Sul, Rio da Madre, D'Una and Tubarão river basins in southern Brazil. The new species is diagnosed among congeners by the bilateral asymmetry of a hood-like structure located immediately anterior to the urogenital papilla of females. The hood is fused with the urogenital papilla on the right side, but free from the papilla on the left side. This hood is reported for the first time in the genus and is present in six of the 21 valid species of Phalloceros, but its bilateral asymmetry is an exclusive condition of the new species. These species do not constitute a monophyletic group. The new species is likely to be phylogenetically related to P. caudimaculatus, whose females have a symmetrical hood.

Barcoding the Neotropical freshwater fish fauna using a new pair of universal COI primers with a discussion of primer dimers and M13 primer tails.

Designing primers for DNA barcoding is a significant challenge for the rich Neotropical fish fauna, which is comprised of ∼6000 species. Previously, researchers required multiple pairs of PCR primers or primer cocktails to obtain standard COI (i.e., mitochondrial cytochrome c oxidase subunit I) barcode sequences from assemblages of freshwater fish in this region. To simplify DNA barcoding and metabarcoding studies of Neotropical freshwater fish, we present a new pair of COI primers, which have yielded high quality barcodes across six teleost orders-Characiformes, Cichliformes, Cyprinodontiformes, Gymnotiformes, Siluriformes, and Synbranchiformes-native to South America. Following previous fish barcoding studies, we also tailed our primers with M13 forward and reverse primers to facilitate the DNA sequencing process. Although this practice generates primer dimers, we obtained complete and high quality COI barcode sequences for all samples. We discuss the problem of primer dimers and suggest strategies for neutralizing their influence on data quality.

A new miniature species of Characidium Reinhardt (Ostariophysi: Characiformes: Crenuchidae) from the headwaters of the rio Araguaia, Brazil.

Characidium inirim is described from the rio das Mortes, rio Araguaia basin in Central Brazil. The new species is distinguished from its congeners by having an incomplete lateral line, a conspicuous dark longitudinal stripe and dark transverse bars not extending ventrally to the lateral line, and by lacking the adipose fin and the dark caudal blotch. A phylogenetic hypothesis based on the available data on the phylogenetic relationships of the subfamily Characidiinae is presented. Results suggest that the new species is closely related to C. bahiensis, C. interruptum, C. lagosantense, C. nupelia, C. lanei, C. laterale, C. occidentale, C. orientale, C. rachovii, C. stigmosun, C. vestigipinne and C. xavante.

Poor taxonomic sampling undermines nomenclatural stability: A reply to Roxo et al. (2019).

A recent study based on genomic data by Roxo et al. (2019) provided a phylogeny of the Loricariidae, the largest catfish family and second largest Neotropical fish family with approximately 1,000 species. The study represents a valuable and innovative contribution for understanding higher-level relationships within the family. The phylogenetic tree inferred by Roxo et al. (2019) thoroughly corroborates the monophyly and relationships of most currently accepted subfamilies of Loricariidae, based on a fair taxon sampling (nearly 14% of the species in the family) representing most genera of each but one of the subfamilies, the Lithogeninae, the sister-group of the remaining members of the family (Pereira & Reis, 2017; Reis et al., 2017). In addition to a hypothesis of relationships, Roxo et al. (2019) also proposed a series of lower-level taxonomic changes, which are deemed premature considering that the taxonomic sampling of the study targeted higher-level clades, and go against one of the pillars of biological classification: nomenclatural stability (e.g., Heterick & Majer, 2018; Beninger & Backeljau, 2019). Here we (1) discuss implications of inadequate taxonomic sampling as a basis for changes in classification of species; (2) explain why the taxonomic sampling design of Roxo et al. (2019) is inadequate for the proposed nomenclatural changes; and (3) advocate that changes to classifications must be grounded on phylogenies with dense sampling of taxa at the relevant level.

DNA barcoding reveals species level divergence between populations of the microhylid frog genus Arcovomer (Anura: Microhylidae) in the Atlantic Rainforest of southeastern Brazil.

The microhylid frogs belonging to the genus Arcovomer have been reported from lowland Atlantic Rainforest in the Brazilian states of Espírito Santo, Rio de Janeiro, and São Paulo. Here, we use DNA barcoding to assess levels of genetic divergence between apparently isolated populations in Espírito Santo and Rio de Janeiro. Our mtDNA data consisting of cytochrome oxidase subunit I (COI) nucleotide sequences reveals 13.2% uncorrected and 30.4% TIM2 + I + Γ corrected genetic divergences between these two populations. This level of divergence exceeds the suggested 10% uncorrected divergence threshold for elevating amphibian populations to candidate species using this marker, which implies that the Espírito Santo population is a species distinct from Arcovomer passarellii. Calibration of our model-corrected sequence divergence estimates suggests that the time of population divergence falls between 12 and 29 million years ago.

A new species of Characidium Reinhardt, 1867 (Characiformes: Crenuchidae) endemic to the Atlantic Forest in Paraná State, southern Brazil

A new species of Characidium is described based on specimens obtained from the highland streams of the Serra do Mar, Atlantic Forest Biome, in Paraná State, Southern Brazil. The new species is possibly a member member of the C. lauroi group, which is diagnosed by having the isthmus unscaled, bars poorly marked, and spots on sides of body, and is composed by four additional species: C. japuhybense ; C. lauroi ; C. oiticicai ; and C. schubarti . The new species differs from its congeners with naked isthmus, except C. helmeri , by having 15-18 principal caudal-fin rays; and 10-12 pectoral-fin rays; and from C. helmeri , by having a slender body, tip of pectoral fin not reaching origin of pelvic fin, tip of pelvic fin not reaching beyond anus, supraorbital present and well developed, and by lacking vertically elongated dashes on sides of body. The new species is known from tributaries of the rio Jordão, in the rio Iguaçu Basin, and rio Taquari, a tributary of the rio Ribeira de Iguape coastal drainage.(AU)

Uma nova espécie de Characidium é descrita com base em exemplares obtidos de riachos de altitude da Serra do Mar, no bioma Mata Atlântica, do Estado do Paraná, Sul do Brasil. A nova espécie é possivelmente um membro do grupo C. lauroi , que pode ser diagnosticado por possuir o istmo sem escamas, barras pouco marcadas e pontos nos lados do corpo, e é composto por quatro espécies adicionais: C. japuhybense ; C. lauroi ; C. oiticicai ; e C. schubarti . A nova espécie difere de seus congêneres com istmo nú, exceto C. helmeri , por possuir 15-18 raios principais na nadadeira caudal, e 10-12 raios na nadadeira peitoral; e de C. helmeri , por possuir o corpo mais alongado, pela ponta da nadadeira peitoral não alcançar a nadadeira pélvica, pela ponta da nadadeira pélvica não alcançar o ânus, pelo supraorbital presente e bem desenvolvido, e pela ausência de manchas verticalmente alongadas na porção ventral do corpo. A nova espécie é conhecida de duas drenagens, nos tributários do rio Jordão, na bacia do rio Iguaçu, e no rio Taquari, um tributário da bacia costeira do rio Ribeira de Iguape.(AU)

The complete mitochondrial genome of Corydoras nattereri (Callichthyidae: Corydoradinae)

The complete mitogenome of Corydoras nattereri , a species of mailed catfishes from southeastern Brazil, was reconstructed using next-generation sequencing techniques. The mitogenome was assembled using mitochondrial transcripts from the liver transcriptomes of three individuals, and produced a circular DNA sequence of 16,557 nucleotides encoding 22 tRNA genes, two rRNA genes, 13 protein-coding genes and two noncoding control regions (D-loop, OrigL). Phylogeographic analysis of closely related sequences of Cytochrome Oxydase C subunit I (COI) demonstrates high diversity among morphologically similar populations of C. nattereri . Corydoras nattereri is nested within a complex of populations currently assigned to C. paleatus and C. ehrhardti . Analysis of mitogenome structure demonstrated that an insertion of 21 nucleotides between the ATPase subunit-6 and COIII genes may represent a phylogenetically informative character associated with the evolution of the Corydoradinae.

O mitogenoma completo de Corydoras nattereri , uma espécie de bagres encouraçados do sudeste do Brasil, foi reconstruído através de técnicas de sequencimento de DNA de próxima geração. O mitogenoma foi produzido a partir de produtos de transcrição mitocondrial dos transcriptomas hepáticos de três indivíduos, resultando numa sequência de DNA circular de 16.557 nucleotídeos abrangendo 22 genes de tRNA, dois genes de rRNA, 13 genes codificadores de proteínas e duas regiões de controle não codificadoras (D-loop, OrigL). A análise filogenética de sequências proximamente relacionadas da subunidade I do gene Citocrome Oxidase C (COI) demonstrou a existência de elevada diversidade entre populações morfologicamente similares de C. nattereri . Corydoras nattereri está inserida num complexo de populações atualmente identificadas como C. paleatus e C. ehrhardti . A análise da estrutura do mitogenoma demonstra que a inserção de uma sequência de 21 nucleotídeos entre os genes da subunidade 6 da ATPase e do COIII representa um caráter filogeneticamente informativo associado à evolução de Corydoradinae.

Restricted-range fishes and the conservation of Brazilian freshwaters.

BACKGROUND: Freshwaters are the most threatened ecosystems on earth. Although recent assessments provide data on global priority regions for freshwater conservation, local scale priorities remain unknown. Refining the scale of global biodiversity assessments (both at terrestrial and freshwater realms) and translating these into conservation priorities on the ground remains a major challenge to biodiversity science, and depends directly on species occurrence data of high taxonomic and geographic resolution. Brazil harbors the richest freshwater ichthyofauna in the world, but knowledge on endemic areas and conservation in Brazilian rivers is still scarce. METHODOLOGY/PRINCIPAL FINDINGS: Using data on environmental threats and revised species distribution data we detect and delineate 540 small watershed areas harboring 819 restricted-range fishes in Brazil. Many of these areas are already highly threatened, as 159 (29%) watersheds have lost more than 70% of their original vegetation cover, and only 141 (26%) show significant overlap with formally protected areas or indigenous lands. We detected 220 (40%) critical watersheds overlapping hydroelectric dams or showing both poor formal protection and widespread habitat loss; these sites harbor 344 endemic fish species that may face extinction if no conservation action is in place in the near future. CONCLUSIONS/SIGNIFICANCE: We provide the first analysis of site-scale conservation priorities in the richest freshwater ecosystems of the globe. Our results corroborate the hypothesis that freshwater biodiversity has been neglected in former conservation assessments. The study provides a simple and straightforward method for detecting freshwater priority areas based on endemism and threat, and represents a starting point for integrating freshwater and terrestrial conservation in representative and biogeographically consistent site-scale conservation strategies, that may be scaled-up following naturally linked drainage systems. Proper management (e. g. forestry code enforcement, landscape planning) and conservation (e. g. formal protection) of the 540 watersheds detected herein will be decisive in avoiding species extinction in the richest aquatic ecosystems on the planet.

A new species of Hyphessobrycon Durbin(Characiformes: Characidae) from the rio Juruena basin, Central Brazil, with notes on H. loweae Costa & Géry

A new species of Hyphessobrycon, H. peugeoti, is described from the middle portions of the rio Juruena drainage, upper rio Tapajós basin, Mato Grosso State, Brazil. It can be distinguished from all congeners, with the exception of H. loweae and H. heliacus, by a filamentous elongation of the dorsal fin and the approximately straight margin of the anal fin in adult males. It can be distinguished from both H. loweae and H. heliacus by an overall red coloration in life (vs. a golden coloration in life in the latter). Additionally, it can be distinguished from H. heliacus by the lack of chevron-like dark markings along the midline (vs. presence of chevron-like dark-markings in H. heliacus), and from H. loweae by the presence of only five horizontal scale rows between the dorsal-fin origin and the lateral line (vs. 6-7 in H. loweae), and the higher number of branched anal-fin rays (21-24, modally 22, vs. 17-21, modally 20, in H. loweae). Additional meristic, morphometric, and distributional data are provided for Hyphessobrycon loweae, including its first record in the rio Araguaia/Tocantins basin. Comments on a putative monophyletic group including H. peugeoti, H. loweae, H. heliacus, H. elachys, and H. moniliger are presented.

Uma espécie nova de Hyphessobrycon, H. peugeoti, é descrita do trecho médio da drenagem do rio Juruena, bacia do alto rio Tapajós, estado de Mato Grosso, Brasil. Ela difere de todas as congêneres, com exceção de H. loweae e H. heliacus, pelo alongamento em forma de filamento da nadadeira dorsal e pela margem aproximadamente reta da nadadeira anal em machos adultos. Ela difere de H. loweae e H. heliacus por possuir coloração geral vermelha em vida (vs. colorido dourado em vida em H. loweae e H. heliacus). Além disto, a espécie nova difere de H. heliacus por não possuir marcas em forma de divisas ao longo da linha média do corpo (vs. marcas em forma de divisas presentes em H. heliacus), e de H. loweae por possuir apenas cinco séries de escamas horizontais entre a origem da nadadeira dorsal e a linha lateral (vs. 6-7 em H. loweae) e por possuir elevado número de raios ramificados na nadadeira anal (21-24, moda 22, vs. 17-21, moda 20 em H. loweae). Dados merísticos, morfométricos e de distribuição geográfica adicionais são fornecidos para H. loweae, incluindo os primeiros registros da espécie na bacia do rio Tocantins-Araguaia. Discute-se um grupo presumidamente monofilético que inclui H. peugeoti, H. loweae, H. heliacus, H. elachys e H. moniliger.

Chromosomal divergence and maintenance of sympatric Characidium fish species (Crenuchidae, Characidiinae).

Cytogenetic studies were performed in two syntopic species of Characidium, C. lauroi and Characidium sp. cf. C. alipioi, from Ribeirão Grande, Paraíba do Sul river basin. Both species have diploid number 2n=50 chromosomes, but differ in chromosome shape, C-banding pattern and location of nucleolar organizing regions. In Characidium sp. cf. C. alipioi a new type of ZW sex chromosome system composed of equal sized metacentric chromosomes is reported for the first time in the genus Characidium. Species of Characidium with a sex chromosome system form a monophyletic group. Variations in this system are interpreted as resulting from geographic isolation among allopatric species.

Characidium xanthopterum (Ostariophysi: Characiformes: Crenuchidae): a new species from the Central Brazilian Plateau

Characidium xanthopterum is described from tributaries of the upper rio Paraná and upper rio Tocantins basins, in the Central Brazilian Plateau, Goiás State, Brazil. The new species is diagnosed among congeners by the absence of dark bars on the sides of the body in adult specimens, and by the deep yellow coloration in all fins. Ontogenetic change of color pattern is recorded for the first time for Characidium species. Specimens smaller than 32 mm SL possess dark bars on body. These bars disappear with growth between 32 and 35 mm SL, and are always absent in individuals larger than 35 mm SL.

Characidium xanthopterum é descrita de tributários das bacias do alto Paraná e do alto Tocantins, no Planalto Central do Brasil, Estado de Goiás, Brasil. Entre as congêneres, a nova espécie é diagnosticada pela ausência de barras escuras nas porções laterais do corpo em exemplares adultos, e pela presença de todas as nadadeiras fortemente amareladas, sem marcas ou manchas. Exemplares menores de 32 mm CP apresentam barras escuras no corpo. Estas barras desaparecem com o crescimento entre 32 e 35 mm CP, e estão sempre ausentes em indivíduos maiores do que 35 mm CP.