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1.
Int J Obstet Anesth ; 16(1): 22-8, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17125998

RESUMEN

BACKGROUND: The aim was to assess the effect of epidural sufentanil on relative analgesic potencies of epidural bupivacaine, ropivacaine and levobupivacaine by determining the minimum local analgesic concentrations during labour. METHODS: In a randomised, double-blind study, 171 parturients were allocated to one of six groups receiving a 10-mL bolus of bupivacaine, ropivacaine or levobupivacaine alone or with sufentanil 0.75 microg/mL. The concentration of local anaesthetic was determined by the response of the previous parturient using up-down sequential allocation starting at a concentration of 0.13% wt/vol with a testing interval of 0.01%. Effective analgesia was defined as a visual analogue pain score < or = 15/100 mm within 30 min and lasting for 30 min. Median effective concentrations were estimated and two-sided P < 0.05 was significant. RESULTS: Local anaesthetic concentration, use of sufentanil and local anaesthetic drug were independent significant predictors of effective and ineffective analgesia. Bupivacaine was significantly more potent than levobupivacaine and ropivacaine. The relative potency ratios without sufentanil of 0.77:0.83:1.00 were reduced to 0.36:0.38:1.00 by the addition of sufentanil. The major factor influencing local anaesthetic requirements was the addition of sufentanil, which reduced overall requirements by a factor of 4.2 (95% CI 3.6-4.8); this effect was proportionately more enhanced for bupivacaine. CONCLUSIONS: Local anaesthetic requirements for bupivacaine, levobupivacaine and ropivacaine follow an analgesic potency hierarchy. Any potency differences are small when compared to the effect of sufentanil, which resulted in a four-fold reduction in local anaesthetic requirements. Sufentanil may also enhance the potency differences between bupivacaine and the two S-enantiomer agents.


Asunto(s)
Adyuvantes Anestésicos , Anestesia Epidural , Anestesia Obstétrica , Anestésicos Combinados/administración & dosificación , Sufentanilo/farmacología , Adulto , Amidas/administración & dosificación , Analgesia Controlada por el Paciente , Análisis de Varianza , Anestésicos Locales/administración & dosificación , Bupivacaína/administración & dosificación , Bupivacaína/análogos & derivados , Método Doble Ciego , Sinergismo Farmacológico , Femenino , Humanos , Primer Periodo del Trabajo de Parto , Trabajo de Parto , Levobupivacaína , Dimensión del Dolor/métodos , Paridad , Embarazo , Ropivacaína
2.
Cancer Res ; 58(19): 4238-44, 1998 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-9766644

RESUMEN

The retinoblastoma protein-interacting zinc finger gene RIZ maps to the distal short arm of human chromosome 1 (1p36), a region thought to harbor tumor suppressor genes for a variety of human cancers including breast cancer. The RIZ gene normally produces two protein products of different length, RIZ1 and RIZ2. RIZ2 is generated by an internal promoter and lacks an NH2-terminal motif of RIZ1, the PR domain conserved in a subfamily of zinc finger genes that function as negative regulators of tumorigenesis. We have here studied whether the RIZ gene may play a role in human neoplasia. We found that expression of RIZ1 is commonly decreased or at undetectable levels in breast cancer tissues and cell lines. Decreased RIZ1 expression was also found in other tumor types including neuroblastoma and lung cancer. Remarkably, RIZ2 is normally expressed in all cases examined, suggesting that the abnormality observed for RIZ1 is specific. Forced RIZ1 expression in breast cancer cells caused cell cycle arrest in G2-M and/or programmed cell death. These observations suggest an exclusive negative selection for RIZ1 but not RIZ2 in breast cancer and a role for RIZ1 in tumor suppression.


Asunto(s)
Empalme Alternativo , Neoplasias de la Mama/genética , Neoplasias de la Mama/patología , Cromosomas Humanos Par 1 , Proteínas de Unión al ADN , Proteínas Nucleares/biosíntesis , Proteínas Nucleares/genética , Factores de Transcripción , Apoptosis/genética , Neoplasias Óseas/genética , Neoplasias Óseas/patología , Neoplasias Encefálicas/genética , Neoplasias Encefálicas/patología , Mama/citología , Mama/metabolismo , Ciclo Celular/genética , División Celular , Mapeo Cromosómico , Femenino , Fase G2 , N-Metiltransferasa de Histona-Lisina , Humanos , Etiquetado Corte-Fin in Situ , Cinética , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/patología , Mitosis , Neuroblastoma/genética , Neuroblastoma/patología , Osteosarcoma/genética , Osteosarcoma/patología , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Células Tumorales Cultivadas , Dedos de Zinc
3.
Eur J Hum Genet ; 2(3): 177-84, 1994.
Artículo en Inglés | MEDLINE | ID: mdl-7834277

RESUMEN

Polymorphisms in HLA class II genes have been shown to contribute to susceptibility or protection against insulin-dependent diabetes mellitus (IDDM). In the present study the role of HLA class II haplotypes and the role of DQ alpha Arg52, DQ beta Asp57 and of polymorphic amino acids, located in the antigen-binding groove and the CD4-binding domain of the DR beta 1 chain, were studied in 210 unrelated Caucasian IDDM patients and 205 controls. The results showed that the genotype homozygous for DR beta 1Lys71+, which is in linkage disequilibrium with DQ alpha 1Arg52+ provided a major risk (relative risk, RR = 15.46) for IDDM and that combination of DR beta 1Lys71+/+ with homozygosity for DQ beta qAsp57-/- of the DQ beta 1 chain significantly increased the RR for developing IDDM (RR = 20.41). The DQ alpha 1Arg52(-)-DQ beta 1Asp57+ haplotype in cis or trans position conferred the highest protection against IDDM (RR = 0.08). Our findings confirm that protection against IDDM is provided by HLA-DQ loci but that susceptibility for IDDM is provided by both HLA-DRB1 and DQB1 loci. Our results also provide a new and more specific approach to determine the risk of any random Caucasian individual to develop IDDM. Indeed, increased susceptibility or protection against IDDM can be determined by the rapid and simple typing of DR beta 1Lys71, DQ alpha 1Arg52 and DQ beta 1Asp57 in a random person.


Asunto(s)
Aminoácidos/análisis , Diabetes Mellitus Tipo 1/genética , Antígenos HLA-DQ/genética , Antígenos HLA-DR/genética , Adolescente , Adulto , Alelos , Niño , Preescolar , Genotipo , Cadenas HLA-DRB1 , Humanos , Lactante , Persona de Mediana Edad , Polimorfismo Genético , Factores de Riesgo
4.
Transplantation ; 68(12): 1855-8, 1999 Dec 27.
Artículo en Inglés | MEDLINE | ID: mdl-10628764

RESUMEN

BACKGROUND: At our transplant center, primary recipients of either a haplo-identical (haplo-ID) living related (LRD) or a cadaveric (CAD) donor renal allograft are transplanted after a negative donor-specific IgG anti-human globulin (AHG) cross-match (XM). Testing included the historically highest panel-reactive antibody and the immediate (0-7 days) pretransplant sera. A positive donor specific IgM-AHG XM has not been a contraindication to transplant. Reports suggest that donor-specific flow cytometry cross-matches (FCXM) may be more clinically informative than the AHG-XM. METHODS: We therefore evaluated the impact of a positive FCXM (IgG or IgM) on the rejection frequency (0-12 months after transplant) and 1-year graft survival for cyclosporine-prednisone-treated primary (haplo-ID and CAD) renal allograft recipients. All transplants were performed after a negative donor-specific IgG AHG-XM regardless of the IgM-AHG XM status. RESULTS: Rejection frequencies (26% vs. 31%, P = NS) and 1-year graft survivals (92% vs. 89%, P = NS) were comparable for haplo-ID LRD FCXM-negative and IgG-FCXM-positive recipients. However, IgM-FCXM-positive LRD recipients experienced significantly fewer rejections (13% vs. 26% P<0.02) and an improved 1-year graft survival (100% vs. 92%, P<0.02) than FCXM-negative LRD recipients. Similar results were observed for primary CAD recipients. Rejection frequencies (40% vs. 44%, P = NS) and 1-year graft survivals (83% vs. 81%, P = NS) were comparable for primary CAD FCXM-negative and IgG-FCXM-positive recipients. Again, IgM-FCXM-positive primary CAD recipients experienced significantly fewer rejections (22% vs. 40%, P<0.02) and improved 1-year graft survivals (89% vs. 83%, P<0.05) than FCXM-negative recipients. CONCLUSION: These data suggest that, after a negative donor-specific IgG-AHG XM, an IgG-positive FCXM is not a contraindication to transplantation. The presence of IgM may be beneficial in reducing the occurrence of rejection episodes and improving graft survivals.


Asunto(s)
Citometría de Flujo , Inmunoglobulina G/análisis , Trasplante de Riñón , Contraindicaciones , Ciclosporina/uso terapéutico , Femenino , Glucocorticoides/uso terapéutico , Rechazo de Injerto/epidemiología , Supervivencia de Injerto , Prueba de Histocompatibilidad/métodos , Humanos , Inmunoglobulina M/análisis , Inmunosupresores/uso terapéutico , Incidencia , Masculino , Prednisona/uso terapéutico , Factores de Tiempo , Donantes de Tejidos
5.
J Neuroimmunol ; 52(1): 25-32, 1994 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-7911477

RESUMEN

There are compelling data to indicate that the susceptibility to multiple sclerosis (MS) is inherited, at least in part. Particular HLA genotypes may be associated with MS and recently also polymorphisms in the T-cell receptor (TCR) genes have been reported to correlate with the disease; however, these data have been difficult to confirm. We investigated the TCRA and TCRB chain genes of HLA-typed Belgian CP MS patients employing four DNA restriction fragment length polymorphisms (RFLPs) detected with TCR constant (TCRAC1, TCRBC2) and variable (TCRBV8, TCRBV11) gene segments. Similar frequencies in patients and controls were observed for all RFLPs studied. Although the HLA DR2 genotype was significantly associated with MS, no interactive effects were seen with MS, DR2, TCRAC1, TCRBC2 and TCRBV alleles. We conclude that, while a clear association with HLA DR2 is observed, little convincing evidence exists for an association of CP MS with RFLPs of the TCRA or TCRB chain genes.


Asunto(s)
Antígeno HLA-DR2/genética , Esclerosis Múltiple/genética , Receptores de Antígenos de Linfocitos T alfa-beta/genética , Alelos , Genotipo , Haplotipos , Humanos , Esclerosis Múltiple/inmunología , Polimorfismo de Longitud del Fragmento de Restricción
6.
J Virol ; 71(8): 6200-3, 1997 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-9223517

RESUMEN

The RIZ (G3B/MTB-Zf) gene was first isolated based on its ability to bind to the retinoblastoma protein (Rb). An acidic, approximately 100-amino-acid region around the Rb-binding motif of RIZ has structural and antigenic similarity to the conserved sequences of the E1A viral oncogene. We show here that this region interacts specifically with the E1A-binding domain of Rb. This interaction could be disrupted by E1A or by a peptide of RIZ homologous to the CR2 motif of E1A which is involved in binding to Rb family proteins. Also like E1A, RIZ can form a ternary complex with Rb and E2F1. Despite this similarity to E1A, however, RIZ could not bind to the Rb family proteins p107 and p130 in vitro. The data show that the RIZ CR2 motif can mediate differential binding to Rb family proteins. We also mapped the shared antigenic determinant between RIZ and E1A to a conserved sequence, designated CE1, which is located in the C terminus of E1A. Unlike that of ETA, the CE1 motif of RIZ is located next to the CR2 motif. Despite this proximity, CE1 and CR2 appear to act independently. The data show similarities as well as differences between the homologous sequences of RIZ and E1A and contribute to an understanding of the biochemistry of these proteins.


Asunto(s)
Proteínas E1A de Adenovirus/química , Proteínas de Unión al ADN , Proteínas Nucleares/química , Factores de Transcripción , Secuencia de Aminoácidos , Sitios de Unión , N-Metiltransferasa de Histona-Lisina , Datos de Secuencia Molecular , Proteínas Nucleares/metabolismo , Proteína de Retinoblastoma/metabolismo
7.
Genomics ; 34(1): 119-21, 1996 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-8661032

RESUMEN

The retinoblastoma interacting zinc finger gene RIZ is a member of the recently discovered PR domain family that includes the MDS1-EVI1 breakpoint gene involved in human leukemia. To help understand the role of RIZ in human diseases, we have determined the cytogenetic and physical localizations of the RIZ gene. Using fluorescence in situ hybridization, we determined that RIZ maps to 1p36. On the physical map, RIZ is adjacent to the polymorphic marker D1S228. We suggest that the RIZ gene may be a candidate target of 1p36 alterations that commonly occur in neuroendocrine, breast, liver, colon, and lymphoid tumors.


Asunto(s)
Cromosomas Humanos Par 1 , Proteínas de Unión al ADN , Proteínas Nucleares/genética , Factores de Transcripción , Secuencia de Bases , Mapeo Cromosómico , Cromosomas Artificiales de Levadura , Marcadores Genéticos , N-Metiltransferasa de Histona-Lisina , Humanos , Hibridación Fluorescente in Situ , Datos de Secuencia Molecular
8.
Proc Natl Acad Sci U S A ; 92(10): 4467-71, 1995 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-7538672

RESUMEN

The retinoblastoma protein (Rb) is a target of viral oncoproteins. To explore the hypothesis that viral proteins may be structural mimics of cellular proteins, we have searched cDNA libraries for Rb-binding proteins. We report here the cloning of a cDNA for the protein RIZ from rat and human cells. RIZ is a 250-kDa nuclear protein containing eight zinc-finger motifs. It contains an Rb-binding motif that shares an antigenic epitope with the C terminus of E1A. A domain is conserved between RIZ and the PRDI-BF1/Blimp-1 differentiation factor. Other motifs of RIZ include putative GTPase and SH3 (src homology domain 3) domains. RIZ is preferentially expressed in both adult and embryonic rat neuroendocrine tissues. It is also expressed in human retinoblastoma cells and at low levels in all other human cell lines examined. While the function of RIZ is not yet clear, its structure and pattern of expression suggest a role for RIZ in transcriptional regulation during neuronal differentiation and pathogenesis of retinoblastoma.


Asunto(s)
Proteínas E1A de Adenovirus/inmunología , Proteínas de Unión al ADN , Epítopos/análisis , Proteínas Nucleares/inmunología , Proteínas Nucleares/metabolismo , Proteína de Retinoblastoma/metabolismo , Factores de Transcripción , Secuencia de Aminoácidos , Animales , Sitios de Unión , Línea Celular , Clonación Molecular , Secuencia de Consenso , Embrión de Mamíferos , GTP Fosfohidrolasas/inmunología , GTP Fosfohidrolasas/metabolismo , Biblioteca de Genes , N-Metiltransferasa de Histona-Lisina , Humanos , Immunoblotting , Datos de Secuencia Molecular , Miocardio/metabolismo , Proteínas Nucleares/química , Especificidad de Órganos , ARN Mensajero/biosíntesis , Ratas , Proteínas Recombinantes/química , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido , Células Tumorales Cultivadas , Dedos de Zinc
9.
J Biol Chem ; 272(42): 26360-6, 1997 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-9334209

RESUMEN

The RIZ (G3B or MTB-Zf) zinc finger gene is structurally related to the myeloid leukemia gene, MDS1-EVI1, and the transcription repressor/differentiation factor, PRDI-BF1/BLIMP1, through a conserved amino-terminal motif, the PR domain. Similar to MDS1-EVI1, RIZ gene normally produces two protein products that differ by the PR domain. The smaller protein RIZ2 lacks the PR domain of RIZ1 but is otherwise identical to RIZ1. Here we show that RIZ proteins bind to GC-rich or Sp-1-binding elements and repress transcription. Both RIZ1 and RIZ2 repressed the herpes simplex virus thymidine kinase (HSV-TK) promoter, one of the best characterized eukaryotic promoters. Recombinant RIZ1 proteins were able to bind to HSV-TK promoter. This binding was mediated by the GC-rich Sp-1 elements of the promoter and the first three zinc finger motifs of RIZ1. RIZ also encodes a repressor domain that was mapped to the central region of the protein. Fusion of this region to the GAL4 DNA-binding domain generated GAL4 site-dependent transcriptional repressors. We also show that RIZ1 protein can efficiently repress the simian virus 40 (SV40) early promoter, which primarily consists of Sp-1 sites; RIZ2, however, only weakly repressed this promoter, suggesting a role for PR in modulating RIZ protein function. The data have implications for a role of RIZ proteins in the regulation of cellular gene promoters, many of which are characterized by GC-rich elements.


Asunto(s)
Transcripción Genética , Dedos de Zinc/genética , Células 3T3 , Animales , Secuencia de Bases , ADN Recombinante , Proteínas de Unión al ADN/genética , Ratones , Datos de Secuencia Molecular
10.
Tissue Antigens ; 51(5): 577-81, 1998 May.
Artículo en Inglés | MEDLINE | ID: mdl-9672161

RESUMEN

We report here the identification of four novel DRB alleles using a reverse hybridization (CANTYPE) assay. Molecular cloning and sequencing confirmed the initial unusual hybridization patterns. All four new alleles were detected during routine HLA typing for the Canadian Unrelated Bone Marrow Donor Registry. DRB1*0703 is identical to DRB1*0701 except for a single nucleotide substitution (AGA-->AGT), changing codon 29 from Arg to Ser, a so far undetected DRB polymorphism. DRB1*0817 differs from DRB1*0801 by a single nucleotide substitution (TAC-->TTC), changing codon 47 from Tyr to Phe. This polymorphism has not, until now, been identified in DRB1*08 alleles. Compared with DRB3*0301, DRB3*0302 contains a single nucleotide substitution (TAC-->CAC) at codon 30, changing the encoded Tyr to His. This polymorphism is typical for DRB3*02 alleles. DRB3*01014 is identical to DRB3*0101 except for a single silent nucleotide substitution (GGG-->GGA) at codon 84. This polymorphism has previously only been described for the DRB1*15012 allele. DRB1*0817, DRB3*0302 and DRB3*01014 may have arisen from gene conversion, but DRB1*0703 most likely was generated by a point mutation event. The DRB3*0302 allele was detected in two unrelated subjects, while the other three have each only been detected once.


Asunto(s)
Alelos , Antígenos HLA-DR/genética , Secuencia de Bases , ADN Complementario , Antígenos HLA-DR/clasificación , Cadenas HLA-DRB1 , Cadenas HLA-DRB3 , Humanos , Datos de Secuencia Molecular
11.
Tissue Antigens ; 51(6): 658-62, 1998 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-9694360

RESUMEN

Three novel HLA class II alleles (DRB1*1333, DRB1*0426, DRB5*0109) are described here. The 3 novel alleles were initially detected as previously unidentified SSO hybridization patterns using the CANTYPE reverse hybridization assay. Sequences were determined by cloning/sequencing. DRB1*1333 is identical to DRB1*1303 except for a single nucleotide substitution (ACC-->AAC), changing codon 77 from Thr to Asn. This polymorphism is typical for DRB1*03 alleles. DRB1*0426 is identical to DRB1*0401 except for a single nucleotide substitution (GCC-->ACC) at codon 58, changing the encoded Ala to Thr. DRB5*0109 is identical to DRB5*0101, except for a single nucleotide substitution (GAC-->AAC), changing codon 70 from Asp to Asn. Both latter polymorphisms were so far undetected in DRB alleles. DRB1*1333 could have arisen from a gene conversion event, but DRB1*0426 and DRB5*0109 most likely were generated by point mutation events. For all 3 alleles, the sequence was confirmed by the original hybridization pattern (DRB1*1333) or by hybridization to a newly designed probe (DRB1*0426 and DRB5*0109). Ethnic backgrounds were Lebanese for DRB1*1333 and Caucasian for DRB1*0426 and DRB5*0109.


Asunto(s)
Alelos , Antígenos HLA-DR/genética , Secuencia de Bases , ADN , Cadenas HLA-DRB1 , Cadenas HLA-DRB5 , Humanos , Datos de Secuencia Molecular
12.
Int J Cancer ; 83(4): 541-6, 1999 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-10508492

RESUMEN

The distal short arm of human chromosome 1 (1p36) is commonly altered in primary hepatoma tumors and cell lines. This region includes the RIZ gene, a member of the PR (PRDI-BF1/BLIMP1 and RIZ homology) domain family of transcription factors. An unusual feature of this family is the yin-yang involvement in human cancers. Two products are normally produced from a PR family member which differ by the presence or absence of the PR domain; the PR-plus product is disrupted or underexpressed whereas the PR-minus product is present or overexpressed in cancer cells. The PR-plus product RIZ1 is a candidate tumor suppressor because it can induce G(2)/M arrest and/or apoptosis and is commonly underexpressed in breast cancer. Here, we have investigated the role of RIZ in hepatoma. RIZ1 transcript was undetectable in 80% of hepatoma cell lines (8 of 10 lines examined). RIZ1 expression was also decreased in hepatoma tumor specimens. In contrast, RIZ2 transcript was uniformly present in all samples examined. Adenovirus-mediated RIZ1 expression in hepatoma cell lines caused cell cycle arrest in G(2)/M and/or programmed cell death. RIZ1 expression also suppressed tumorigenicity of hepatoma cells in nude mice. Our observations reinforce the yin-yang notion of RIZ gene products in human cancer and suggest a RIZ1 tumor suppressor role in hepatoma.


Asunto(s)
Carcinoma Hepatocelular/metabolismo , Proteínas de Unión al ADN , Neoplasias Hepáticas/metabolismo , Proteínas Nucleares/biosíntesis , Factores de Transcripción , Animales , Apoptosis , Carcinoma Hepatocelular/patología , Ciclo Celular/genética , División Celular/genética , ADN/metabolismo , N-Metiltransferasa de Histona-Lisina , Humanos , Immunoblotting , Neoplasias Hepáticas/patología , Ratones , Ratones Desnudos , Trasplante de Neoplasias , Proteínas Nucleares/genética , Proteínas Nucleares/fisiología , ARN Mensajero/biosíntesis , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Factores de Tiempo , Transfección , Células Tumorales Cultivadas
13.
Tissue Antigens ; 50(3): 291-302, 1997 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-9331952

RESUMEN

A three-step reverse hybridization assay for allele level-resolution DRB1-DRB3-DRB4-DRB5 genotyping is described. Samples are initially amplified using a generic primer pair for all DRB1-DRB3-DRB4-DRB5 alleles and PCR products are hybridized to generic typing membranes. An intermediate-resolution level genotyping is obtained at this point. Depending on the phenotype, samples are then subjected to a DR1, DR2, DR4, DR52A, DRB3 and/or DRB5 type-specific amplification and hybridization. A third step, involving sequence-specific PCR followed by type-specific hybridization, is only performed to solve certain DR4 and DR52A heterozygous combinations. The assay allows 100% allele level-resolution DRB genotyping. Hybridization membranes contain panels of SSO probes that were optimized to all react specifically under identical stringency conditions. A computer program was written to assist in analysis of the hybridization patterns. The assay was throughly evaluated and has been used to type over 10,000 donors from the Canadian Unrelated Bone Marrow Donor Registry (UBMDR) at allele level-resolution. This method proved to be flexible, easy to update for newly described alleles, easy to perform, fast, and safe. It is also reliable and specific, as 9 novel DRB alleles so far have been detected as aberrant hybridization patterns.


Asunto(s)
Antígenos HLA-DR/genética , Alelos , Genotipo , Cadenas HLA-DRB1 , Cadenas HLA-DRB3 , Cadenas HLA-DRB4 , Cadenas HLA-DRB5 , Humanos , Sondas de Oligonucleótidos , Reacción en Cadena de la Polimerasa/métodos , Polimorfismo Genético , Análisis de Secuencia de ADN
14.
Mol Cell Probes ; 6(1): 33-9, 1992 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-1372093

RESUMEN

An assay is described in which 11 mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene can be screened simultaneously. Six different exons of the CFTR gene are amplified in a single multiplex amplification. Biotinylated dUTP is incorporated into the different fragments during the amplification process. A sample of this mixture is then hybridized to 21 different poly-dT tailed oligonucleotide probes which are bound to a nylon membrane. In order to screen the different mutations in a single step hybridization, the length of the different oligonucleotides and the amount used in the assay were optimized. The detection is performed by binding avidin-alkaline phosphatase to the biotin, followed by a chemiluminescent reaction. By means of this fast and sensitive assay, about 85% of all the cystic fibrosis mutations in the Belgian population can be detected.


Asunto(s)
Proteínas de la Membrana/genética , Mutación/genética , Secuencia de Bases , Fibrosis Quística/genética , Regulador de Conductancia de Transmembrana de Fibrosis Quística , Humanos , Immunoblotting/métodos , Datos de Secuencia Molecular , Técnicas de Amplificación de Ácido Nucleico , Sondas de Oligonucleótidos/genética
15.
Tissue Antigens ; 52(3): 294-9, 1998 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-9802612

RESUMEN

Four novel HLA Class II alleles were identified using CANTYPE reverse hybridization assay. The initial unusual SSO hybridization patterns were confirmed by cloning and sequencing analysis. DRB3*0208 allele is identical to DRB3*0202 except for three nucleotide substitutions (GAT-->AGC) changing codon 57 from Asp to Ser. This polymorphism has so far been undetected in DRB3 alleles. DRB1*15023 differs from DRB1*15021 by a single silent nucleotide substitution (AAC-->AAT, both encoding for Asn) at codon 33. This polymorphism has not, until now, been identified in DRB alleles. Compared with DQB1*03011, the novel DQB1*03012 contains a single silent nucleotide substitution (GCA-->GCG, both encoding for Ala) at codon 38. Finally, DQB1*0614 allele is identical to DQB1*0603 except for a single nucleotide substitution (TAC-->TTC), changing codon 9 from Tyr to Phe. Polymorphisms observed here in the DQB1*03012 and DQB1*0614 alleles are present in several of the known DQB1 alleles. DRB3*0208, DQB1*03012 and DQB1*0614 may have arisen from gene conversion, but the DRB1*15023 most likely was generated by a point mutation event. DQB1*0614 was detected in three related subjects, while each of the other three new alleles has only been detected once.


Asunto(s)
Alelos , Antígenos HLA-DQ/genética , Antígenos HLA-DR/genética , Secuencia de Bases , Clonación Molecular , Femenino , Cadenas beta de HLA-DQ , Cadenas HLA-DRB3 , Antígenos de Histocompatibilidad Clase II/genética , Prueba de Histocompatibilidad , Humanos , Masculino , Datos de Secuencia Molecular , Linaje , Alineación de Secuencia , Análisis de Secuencia de ADN
16.
Tissue Antigens ; 41(1): 1-14, 1993 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-8456438

RESUMEN

A nonisotopic oligotyping method using reverse dot blot hybridization was developed for HLA class II DQA1, DQB1, DPB1, DRB1, DRB3, DRB4, DRB5 alleles. The polymorphic second exon of the different genes was amplified by the polymerase chain reaction (PCR). For each gene the amplified DNA was hybridized at stringent conditions to membrane-bound sequence-specific oligonucleotides (SSOs) and visualization of positive signals was done by chemiluminescence. A combination of 11, 18, 23 and 31 SSOs was designed to identify 9/13 DQA1, 16/17 DQB1, 23/24 DPB1 and 50/55 DRB1, 4 DRB3, 1 DRB4, 3/4 DRB5 alleles respectively. For the DRB1 locus, an additional DRB1*04 group-specific PCR was developed to make discrimination between the DR4 alleles possible in different heterozygous combinations. The procedure described here provides rapid and nonisotopic genotyping of heterozygous samples from a variety of sources and can be applied for tissue typing, disease susceptibility studies and forensic medicine.


Asunto(s)
Genes MHC Clase II , Antígenos HLA-D/genética , Prueba de Histocompatibilidad/métodos , Hibridación de Ácido Nucleico , Reacción en Cadena de la Polimerasa , Alelos , Secuencia de Bases , ADN/genética , Humanos , Datos de Secuencia Molecular , Sondas de Oligonucleótidos
17.
Am J Hum Genet ; 67(6): 1428-36, 2000 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-11055898

RESUMEN

Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder affecting 1/10,000-15,000 girls. The disease-causing gene was identified as MECP2 on chromosome Xq28, and mutations have been found in approximately 80% of patients diagnosed with RTT. Numerous mutations have been identified in de novo and rare familial cases, and they occur primarily in the methyl-CpG-binding and transcriptional-repression domains of MeCP2. Our first diagnostic strategy used bidirectional sequencing of the entire MECP2 coding region. Subsequently, we implemented a two-tiered strategy that used denaturing high-performance liquid chromatography (DHPLC) for initial screening of nucleotide variants, followed by confirmatory sequencing analysis. If a definite mutation was not identified, then the entire MECP2 coding region was sequenced, to reduce the risk of false negatives. Collectively, we tested 228 unrelated female patients with a diagnosis of possible (209) or classic (19) RTT and found MECP2 mutations in 83 (40%) of 209 and 16 (84%) of 19 of the patients, respectively. Thirty-two different mutations were identified (8 missense, 9 nonsense, 1 splice site, and 14 frameshifts), of which 12 are novel and 9 recurrent in unrelated patients. Seven unclassified variants and eight polymorphisms were detected in 228 probands. Interestingly, we found that T203M, previously reported as a missense mutation in an autistic patient, is actually a benign polymorphism, according to parental analysis performed in a second case identified in this study. These findings highlight the complexities of missense variant interpretation and emphasize the importance of parental DNA analysis for establishing an etiologic relation between a possible mutation and disease. Overall, we found a 98.8% concordance rate between DHPLC and sequence analyses. One mutation initially missed by the DHPLC screening was identified by sequencing. Modified conditions subsequently enabled its detection, underscoring the need for multiple optimized conditions for DHPLC analysis. We conclude that this two-tiered approach provides a sensitive, robust, and efficient strategy for RTT molecular diagnosis.


Asunto(s)
Proteínas Cromosómicas no Histona , Proteínas de Unión al ADN/genética , Pruebas Genéticas/métodos , Mutación/genética , Polimorfismo Genético/genética , Proteínas Represoras , Síndrome de Rett/diagnóstico , Síndrome de Rett/genética , Alelos , Sustitución de Aminoácidos/genética , Secuencia de Bases , Cromatografía Líquida de Alta Presión/métodos , Análisis Mutacional de ADN/métodos , Reacciones Falso Negativas , Femenino , Variación Genética/genética , Humanos , Masculino , Proteína 2 de Unión a Metil-CpG , Datos de Secuencia Molecular , Linaje , Diagnóstico Prenatal/métodos , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Análisis de Secuencia de ADN
18.
Prenat Diagn ; 13(12): 1111-22, 1993 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-7513888

RESUMEN

We have developed a heminested PCR (polymerase chain reaction) method, performed on single cells, for the analysis of the most common cystic fibrosis (CF) mutation (delta F508). As a quality control, the polymorphic exon 2 of the HLA DQA1 locus was co-amplified from the same cell. With a non-radioactive reverse dot-blot assay, the genotype of these two loci could be determined. Experiments on 98 single fibroblasts, heterozygous for the CFTR and the DQA1 locus, showed that amplification of either locus could be obtained in 97 per cent of the cases, but only 90 per cent showed heterozygosity for CF, 75 per cent showed heterozygosity for DQA1, and 74 per cent showed heterozygosity for both CF and DQA1. Contaminations detected only after DQA1 typing occurred in 3 per cent of our samples. Error rate calculations based on our experimental PCR data indicate that single blastomere diagnosis would lead to unacceptable errors, i.e., an affected fetus, in less than 1 per cent of the cases. The risk of undetected crossing-over or the dubious results that crossing-over could generate, would make isolated polar body diagnosis at the present time very difficult. The combined approach of PCR on polar bodies followed by confirmation of the diagnosis on blastomeres, however, should give a solid base for preimplantation diagnosis of monogenic disorders.


Asunto(s)
Fibrosis Quística/genética , Desarrollo Embrionario , Antígenos HLA-DQ/genética , Proteínas de la Membrana/genética , Reacción en Cadena de la Polimerasa/métodos , Diagnóstico Prenatal , Secuencia de Bases , Blastómeros/ultraestructura , Fibrosis Quística/diagnóstico , Regulador de Conductancia de Transmembrana de Fibrosis Quística , Exones , Femenino , Fibroblastos/ultraestructura , Cadenas alfa de HLA-DQ , Humanos , Datos de Secuencia Molecular , Mutación , Embarazo , Control de Calidad
19.
Br J Cancer ; 84(6): 743-7, 2001 Mar 23.
Artículo en Inglés | MEDLINE | ID: mdl-11259086

RESUMEN

The RIZ (PRDM2) locus commonly undergoes loss of heterozygosity (LOH) and maps within the minimal deleted region on 1p36 in hepatocellular carcinoma (HCC). Although peptide-altering mutations of RIZ are rare in HCC, the RIZ1 product is commonly lost in HCC and has tumour suppressive activities. Here, we analysed RIZ gene mutations and LOH in HCC, breast cancer, familial melanoma, colon cancer, and stomach cancer. We found 7 polymorphisms but no mutations. By analysing the Pro704-deletion polymorphism, we detected LOH of RIZ in 31 of 79 (39%) informative HCC cases, 11 of 47 (23%) colon cancer cases, 8 of 43 (19%) breast cancer cases, 8 of 66 (12%) stomach cancer cases. Importantly, loss of the Pro704(+)allele was found in 74% of the 31 LOH positive HCC cases (P< 0.01), indicating a preferential loss and hence a stronger tumour suppressor role for this allele compared to the P704(-)allele. In addition, the Pro704(+)allele was found to be more common in Asians (0.61) than Caucasians (0.42) (P = 0.0000), suggesting an interesting link between gene polymorphisms and potential differences in tumour incidence between racial groups.


Asunto(s)
Alelos , Carcinoma Hepatocelular/genética , Deleción Cromosómica , Proteínas de Unión al ADN , Neoplasias Hepáticas/genética , Proteínas Nucleares/genética , Polimorfismo Genético , Factores de Transcripción , Secuencia de Bases , Neoplasias de la Mama/genética , Cartilla de ADN , N-Metiltransferasa de Histona-Lisina , Humanos , Melanoma/genética , Mutación
20.
Clin Exp Immunol ; 97(3): 517-21, 1994 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-8082309

RESUMEN

Population and family studies show that predisposition to type I diabetes (IDDM) is multifactorial, and that polymorphisms in the MHC region contribute substantially to the susceptibility to IDDM. In the present study the association of polymorphisms in the CD4 and the delta subunit of CD3 with IDDM were examined in a Belgian population. We observed that the frequency of the CD A4/A4 genotype and of the CD3 91 allele were significantly increased P = 0.0077) and decreased (P = 3.8 x 10(-5), respectively, in IDDM compared with controls. These results therefore suggest that CD4, CD3 or neighbouring genes might contribute to IDDM susceptibility. These results are, however, preliminary and cannot be considered as established until re-tested in a new population.


Asunto(s)
Complejo CD3/genética , Antígenos CD4/genética , Diabetes Mellitus Tipo 1/inmunología , Polimorfismo Genético , Alelos , Secuencia de Bases , Cartilla de ADN , Diabetes Mellitus Tipo 1/genética , Frecuencia de los Genes , Genotipo , Antígenos de Histocompatibilidad Clase II/genética , Humanos , Datos de Secuencia Molecular
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