RESUMEN
The Wnt/Wingless signaling pathway plays critical roles in metazoan development and energy metabolism, but its role in regulating lipid homeostasis remains not fully understood. Here, we report that the activation of canonical Wnt/Wg signaling promotes lipolysis while concurrently inhibiting lipogenesis and fatty acid ß-oxidation in both larval and adult adipocytes, as well as cultured S2R+ cells, in Drosophila. Using RNA-sequencing and CUT&RUN (Cleavage Under Targets & Release Using Nuclease) assays, we identified a set of Wnt target genes responsible for intracellular lipid homeostasis. Notably, active Wnt signaling directly represses the transcription of these genes, resulting in decreased de novo lipogenesis and fatty acid ß-oxidation, but increased lipolysis. These changes lead to elevated free fatty acids and reduced triglyceride (TG) accumulation in adipocytes with active Wnt signaling. Conversely, downregulation of Wnt signaling in the fat body promotes TG accumulation in both larval and adult adipocytes. The attenuation of Wnt signaling also increases the expression of specific lipid metabolism-related genes in larval adipocytes, wing discs, and adult intestines. Taken together, these findings suggest that Wnt signaling-induced transcriptional repression plays an important role in regulating lipid homeostasis by enhancing lipolysis while simultaneously suppressing lipogenesis and fatty acid ß-oxidation.
Asunto(s)
Proteínas de Drosophila , Vía de Señalización Wnt , Animales , Proteínas de Drosophila/metabolismo , Proteínas de Drosophila/genética , Adipocitos/metabolismo , Movilización Lipídica , Drosophila melanogaster/metabolismo , Drosophila melanogaster/genética , Proteína Wnt1/metabolismo , Proteína Wnt1/genética , Lipólisis , Lipogénesis/genética , Triglicéridos/metabolismo , Metabolismo de los Lípidos/genética , Larva/metabolismo , Larva/genética , Transcripción Genética , HomeostasisRESUMEN
Nucleic acids from bacteria or viruses induce potent immune responses in infected cells1-4. The detection of pathogen-derived nucleic acids is a central strategy by which the host senses infection and initiates protective immune responses5,6. Cyclic GMP-AMP synthase (cGAS) is a double-stranded DNA sensor7,8. It catalyses the synthesis of cyclic GMP-AMP (cGAMP)9-12, which stimulates the induction of type I interferons through the STING-TBK1-IRF-3 signalling axis13-15. STING oligomerizes after binding of cGAMP, leading to the recruitment and activation of the TBK1 kinase8,16. The IRF-3 transcription factor is then recruited to the signalling complex and activated by TBK18,17-20. Phosphorylated IRF-3 translocates to the nucleus and initiates the expression of type I interferons21. However, the precise mechanisms that govern activation of STING by cGAMP and subsequent activation of TBK1 by STING remain unclear. Here we show that a conserved PLPLRT/SD motif within the C-terminal tail of STING mediates the recruitment and activation of TBK1. Crystal structures of TBK1 bound to STING reveal that the PLPLRT/SD motif binds to the dimer interface of TBK1. Cell-based studies confirm that the direct interaction between TBK1 and STING is essential for induction of IFNß after cGAMP stimulation. Moreover, we show that full-length STING oligomerizes after it binds cGAMP, and highlight this as an essential step in the activation of STING-mediated signalling. These findings provide a structural basis for the development of STING agonists and antagonists for the treatment of cancer and autoimmune disorders.
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Secuencias de Aminoácidos , Secuencia Conservada , Proteínas de la Membrana/química , Proteínas de la Membrana/metabolismo , Proteínas Serina-Treonina Quinasas/metabolismo , Cristalografía por Rayos X , Activación Enzimática , Células HEK293 , Humanos , Interferón beta/metabolismo , Proteínas de la Membrana/genética , Modelos Moleculares , Mutación , Nucleótidos Cíclicos/metabolismo , Unión Proteica , Transducción de SeñalRESUMEN
Notch signaling and epigenetic factors are known to play critical roles in regulating tissue homeostasis in most multicellular organisms, but how Notch signaling coordinates with epigenetic modulators to control differentiation remains poorly understood. Here, we identify heterochromatin protein 1c (HP1c) as an essential epigenetic regulator of gut homeostasis in Drosophila. Specifically, we observe that HP1c loss-of-function phenotypes resemble those observed after Notch signaling perturbation and that HP1c interacts genetically with components of the Notch pathway. HP1c represses the transcription of Notch target genes by directly interacting with Suppressor of Hairless (Su(H)), the key transcription factor of Notch signaling. Moreover, phenotypes caused by depletion of HP1c in Drosophila can be rescued by expressing human HP1γ, suggesting that HP1γ functions similar to HP1c in Drosophila. Taken together, our findings reveal an essential role of HP1c in normal development and gut homeostasis by suppressing Notch signaling.
Asunto(s)
Proteínas de Drosophila , Animales , Proteínas Cromosómicas no Histona/genética , Drosophila/genética , Proteínas de Drosophila/genética , Heterocromatina , Homeostasis , Humanos , Receptores Notch/genéticaRESUMEN
Dysregulation of CDK8 (Cyclin-Dependent Kinase 8) and its regulatory partner CycC (Cyclin C), two subunits of the conserved Mediator (MED) complex, have been linked to diverse human diseases such as cancer. Thus, it is essential to understand the regulatory network modulating the CDK8-CycC complex in both normal development and tumorigenesis. To identify upstream regulators or downstream effectors of CDK8, we performed a dominant modifier genetic screen in Drosophila based on the defects in vein patterning caused by specific depletion or overexpression of CDK8 or CycC in developing wing imaginal discs. We identified 26 genomic loci whose haploinsufficiency can modify these CDK8- or CycC-specific phenotypes. Further analysis of two overlapping deficiency lines and mutant alleles led us to identify genetic interactions between the CDK8-CycC pair and the components of the Decapentaplegic (Dpp, the Drosophila homolog of TGFß, or Transforming Growth Factor-ß) signaling pathway. We observed that CDK8-CycC positively regulates transcription activated by Mad (Mothers against dpp), the primary transcription factor downstream of the Dpp/TGFß signaling pathway. CDK8 can directly interact with Mad in vitro through the linker region between the DNA-binding MH1 (Mad homology 1) domain and the carboxy terminal MH2 (Mad homology 2) transactivation domain. Besides CDK8 and CycC, further analyses of other subunits of the MED complex have revealed six additional subunits that are required for Mad-dependent transcription in the wing discs: Med12, Med13, Med15, Med23, Med24, and Med31. Furthermore, our analyses confirmed the positive roles of CDK9 and Yorkie in regulating Mad-dependent gene expression in vivo. These results suggest that CDK8 and CycC, together with a few other subunits of the MED complex, may coordinate with other transcription cofactors in regulating Mad-dependent transcription during wing development in Drosophila.
Asunto(s)
Ciclina C/genética , Quinasa 8 Dependiente de Ciclina/genética , Proteínas de Unión al ADN/metabolismo , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Factores de Transcripción/metabolismo , Animales , Ciclina C/metabolismo , Quinasa 8 Dependiente de Ciclina/metabolismo , Drosophila , Regulación del Desarrollo de la Expresión Génica , Haploinsuficiencia , Discos Imaginales/crecimiento & desarrollo , Discos Imaginales/metabolismo , Transducción de Señal , Transcripción GenéticaRESUMEN
The direct discharge of trace amounts of antibiotics in mariculture wastewater results in adverse effect on the ecological environment of receiving waters. Hence, the degradation of tetracycline (TC) in mariculture wastewater by the ultraviolet/peroxydisulfate (UV/PS) process was investigated in this study. The results revealed that 95.73% removal of TC with 5 mg/L dosage was achieved after 30 min UV/PS treatment. Chloride ion (Cl-) in mariculture wastewater slightly inhibited TC degradation by scavenging free radicals. Comparably, bromine ion (Br-) significantly enhanced the removal of TC and even doubled the degradation rate. Reactive bromine species (RBS) made a major contribution to the TC removal, followed by free chlorine and other reactive chlorine species (RCS). The TC degradation pathway revealed that functional group shedding and ring-opening reactions occurred successively. In addition, TC mineralization rate was low within 30 min, causing the inefficient reduction of acute toxicity of TC and its intermediates, which could be improved by optimizing the process parameters. These results indicated that UV/PS is a new alternative process for the harmless treatment of mariculture wastewater containing the antibiotics.
Asunto(s)
Contaminantes Químicos del Agua , Purificación del Agua , Antibacterianos , Bromo , Cloro , Cinética , Oxidación-Reducción , Tetraciclina/análisis , Rayos Ultravioleta , Aguas Residuales , Contaminantes Químicos del Agua/análisis , Purificación del Agua/métodosRESUMEN
Seeking available and economical carbon sources for denitrification process is an intractable issue for wastewater treatment. However, no study compared different types of waste sludge as carbon source from denitrification mechanism, organics utilization and microbial community aspects. In this study, primary and secondary sludge were pretreated by thermophilic bacteria (TB), and its hydrolysis or acidogenic liquid were prepared as carbon sources for denitrification. At C/N of 8-3, the variations of NO3--N and NO2--N were profiled in typical cycles and denitrification kinetics was analyzed. Primary sludge achieved a competitive NOX-N removal efficiency with less dosage than secondary sludge. Fourier transform infrared (FTIR) spectroscopy was introduced to analyze organic composition from functional-group perspective and the utilization of organic matters in different sludge carbon sources was investigated. To further analyze the microbial community shift in different denitrification systems, high-throughput sequencing technology was applied. Results showed that denitrifier Thauera, belonging to Proteobacteria, was predominant, and primary sludge acidogenic liquid enriched Thauera most intensively with relative abundance of 47.3%.
Asunto(s)
Microbiota , Aguas del Alcantarillado , Reactores Biológicos , Carbono , Desnitrificación , Hidrólisis , Cinética , Nitratos , Nitrógeno/análisis , Aguas del Alcantarillado/química , Aguas Residuales/químicaRESUMEN
Recirculating aquaculture systems (RAS) effluent is characterized by low COD to total inorganic nitrogen ratio (C/N), excessive nitrate, and the presence of traces of antibiotics. Hence, it urgently needs to be treated before recycling or discharging. In this study, four denitrification bioreactors at increasing C/N ratios (0, 0.7, 2, and 5) were started up to treat mariculture wastewater under the sulfamethoxazole (SMX) stress, during which the bioreactors performance and the shift of mixotrophic microbial communities were explored. The result showed that during the SMX exposure, organic supplementation enhanced nitrate and thiosulfate removal, and eliminated nitrite accumulation. The denitrification rate was accelerated by increasing C/N from 0 to 2, while it declined at C/N of 5. The decline was ascribed to which SMX reduced the relative abundance of denitrifiers, but improved the capability of dissimilatory nitrogen reduction to ammonia (DNRA) and sulfide production. The direct evidence was the relative abundance of sulfidogenic populations, such as Desulfuromusa, Desulfurocapsa, and Desulfobacter increased under the SMX stress. Moreover, high SMX (1.5 mg L-1) caused the obvious accumulation of ammonia at C/N of 5 due to the high concentration of sulfide (3.54 ± 1.08 mM) and the enhanced DNRA process. This study concluded that the mixotrophic denitrification process with the C/N of 0.7 presented the best performance in nitrate and sulfur removal and indicated the maximum resistance to SMX.
Asunto(s)
Microbiota , Nitratos , Amoníaco , Reactores Biológicos , Desnitrificación , Suplementos Dietéticos , Nitrógeno , Óxidos de Nitrógeno , Sulfametoxazol , SulfurosRESUMEN
The effect of sequencing batch membrane bioreactor (SMBR) on external carbon addition and enrofloxacin was investigated to treat synthetic mariculture wastewater. Anoxic/anaerobic and low COD/TN can improve the ammonia oxidation of the system, and the NH4+-N removal efficiency above 99%. External carbon was added and an anoxic environment was set to provide a suitable environment for denitrifying bacteria. When the external carbon source was 50-207 mg/L, the TN removal efficiency (31.82%-37.73%) and the COD of the effluent (28.85-36.58 mg/L) had little change. The partition resistance model showed that cake deposition resistance (RC,irr) and irreversible resistance (RPB) were the main components. And with the increase in cleaning times, the fouling rate of membrane components accelerated. Enrofloxacin can promote the TN removal efficiency (45.66%-93.74%) and had a significant effect on TM7a, Cohaesibacter, Vibrio and Phaeobacter.
Asunto(s)
Microbiota , Aguas Residuales , Amoníaco , Reactores Biológicos/microbiología , Carbono , Desnitrificación , Enrofloxacina , Nitrógeno , Eliminación de Residuos LíquidosRESUMEN
The effect of salinity on the nitrogen removal performance and microbial community of activated sludge was investigated in a sequencing batch reactor. The NH4+-N removal efficiency was over 95% at 0-4% salinity, indicating that the nitrification performance of activated sludge was slightly affected by lower salinity. The obvious nitrite accumulation was observed with the increment of the salinity to 5%, followed by a notable decline in the nitrogen removal performance at 6% salinity. The salinity inhibited the microbial activity, and the specific rate of nitrification and denitrification was decreased by the increasing salinity obviously. Additionally, the lower activity of superoxide dismutase and peroxidase and higher reactive oxygen species content in activated sludge might account for the deteriorative nitrogen removal performance at 6% salinity. Metagenomics analysis revealed that the genes encoding the ABC-type quaternary amine transporter in the ABC transporter pathway were abundant in the activated sludge at 2% and 4% salinity, and the higher salinity of 6% led to the loss of the genes encoding the p-type Na+ transporter in the ABC transporter pathway. These results indicated that the salinity could weaken the ABC transporter pathway for the balance of osmotic pressure in activated sludge. The microbial activity and nitrogen removal performance of activated sludge were decreased due to the unbalanced osmotic pressure at higher salinity.
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Nitrógeno , Aguas del Alcantarillado , Transportadoras de Casetes de Unión a ATP/metabolismo , Aminas , Reactores Biológicos , Desnitrificación , Metagenómica , Nitrificación , Nitritos , Nitrógeno/análisis , Peroxidasas/metabolismo , Especies Reactivas de Oxígeno , Salinidad , Superóxido Dismutasa/metabolismo , Eliminación de Residuos Líquidos/métodosRESUMEN
CRISPR/Cas9-based transcriptional activation (CRISPRa) has recently emerged as a powerful and scalable technique for systematic overexpression genetic analysis in Drosophila melanogaster We present flySAM, a potent tool for in vivo CRISPRa, which offers major improvements over existing strategies in terms of effectiveness, scalability, and ease of use. flySAM outperforms existing in vivo CRISPRa strategies and approximates phenotypes obtained using traditional Gal4-UAS overexpression. Moreover, because flySAM typically requires only a single sgRNA, it dramatically improves scalability. We use flySAM to demonstrate multiplexed CRISPRa, which has not been previously shown in vivo. In addition, we have simplified the experimental use of flySAM by creating a single vector encoding both the UAS:Cas9-activator and the sgRNA, allowing for inducible CRISPRa in a single genetic cross. flySAM will replace previous CRISPRa strategies as the basis of our growing genome-wide transgenic overexpression resource, TRiP-OE.
Asunto(s)
Animales Modificados Genéticamente , Sistemas CRISPR-Cas , Proteínas de Drosophila , Regulación de la Expresión Génica/genética , Factores de Transcripción , Animales , Animales Modificados Genéticamente/genética , Animales Modificados Genéticamente/metabolismo , Proteínas de Drosophila/biosíntesis , Proteínas de Drosophila/genética , Drosophila melanogaster , Factores de Transcripción/biosíntesis , Factores de Transcripción/genéticaRESUMEN
In this study, the carbon black/polytetrafluoroethylene (C/PTFE) electrode was prepared under the best conditions, and then it was modified by PTFE and NH4HCO3 to make a PTFE-C/PTFE electrode. PTFE-C/PTFE electrode was used to enhance H2O2 in-situ electro-generation and the electro-peroxone process (EPP) treatment of leachate. Various analytical methods results were applied to prove that the PTFE-C/PTFE electrode greatly improved the performance of H2O2 generation and electrode stability. The effects of initial pH, current intensity, ozone flow and Cl- concentration on the removal of NH4+ and chemical oxygen demand (COD) from landfill leachate were studied in the EPP with PTFE-C/PTFE as cathode (MEPP) by one factor at a time (OFAT) method. The initial pH value 7.5, current intensity 300 mA, ozone flow 875 mg/h and Cl- concentration value 4198 mg/L were selected as the best operating parameters. A response surface methodology based on box-behnken design (BBD) was employed to optimize running conditions of the MEPP of leachate. After optimization, Mineralization efficiency of the NH4+ and COD was obtained to be 79.83% and 52.14%, and biochemical oxygen demand (BOD5)/COD ratio increased to 0.38 after 4 h. The removal curves of NH4+ and COD in the MEPP conforms to the zero-order and first-order reaction kinetics, respectively. Three-dimensional excitation-emission matrix fluorescence spectroscopy (3D-EEM) analysis shows that MEPP has a good removal effect on organics in leachate. Energy-dispersive spectroscopy (EDS) and X-ray diffraction (XRD) analysis were carried out for the cathode sediment, which was mainly magnesium ion silicate precipitation and NaCl.
Asunto(s)
Contaminantes Químicos del Agua , Análisis de la Demanda Biológica de Oxígeno , Electrodos , Peróxido de Hidrógeno , Oxidación-Reducción , PolitetrafluoroetilenoRESUMEN
Kinetic parameters affecting effluent water quality including half saturation constant (Ks), maximum specific growth rate (µmax), and specific affinity ([Formula: see text], defined as µmax/Ks) were investigated using three types of anaerobic sludge (raw anaerobic digestion sludge referred to as unacclimated sludge, unacclimated sludge after endogenous decay, and sludge acclimated to low-strength wastewater in an anaerobic membrane bioreactor (AnMBR) for 360 days). Long-term acclimation to low-strength wastewater resulted in sludge with high specific affinity (1.6 × 10-3 L/mg COD/day for acclimated sludge compared to 4.1 × 10-4 L/mg COD/day for unacclimated sludge). The µmax values for unacclimated sludge and acclimated sludge were 0.08 and 0.07 day-1, respectively. The Ks values for unacclimated sludge and acclimated sludge were 194 ± 81 mg COD/L and 45 ± 13 mg COD/L, respectively. Although the Ks of unacclimated sludge after endogenous decay increased to 772 ± 74 mg COD/L, µmax increased to 0.35 day-1 as well, resulting in no statistically significant difference of [Formula: see text] between the two types of unacclimated sludge. Overall, [Formula: see text] is a better indicator than µmax or Ks alone for determining effluent water quality, as effluent substrate concentration is approximately inversely proportional to the specific affinity. 16S rRNA sequencing data analysis indicated a high abundance (85.8% of total archaea) of Methanosaeta in the microbial community after long-term acclimation. High [Formula: see text] associated with the enrichment of Methanosaeta appears to ensure successful anaerobic treatment of low-strength wastewater.
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Euryarchaeota/metabolismo , Metano/metabolismo , Microbiota , Aguas del Alcantarillado/microbiología , Aguas Residuales/microbiología , Anaerobiosis , Reactores Biológicos/microbiología , Euryarchaeota/genética , Cinética , Methanosarcinales/metabolismo , Eliminación de Residuos Líquidos/métodos , Eliminación de Residuos Líquidos/normasRESUMEN
Deregulated Wnt signaling and altered lipid metabolism have been linked to obesity, diabetes, and various cancers, highlighting the importance of identifying inhibitors that can modulate Wnt signaling and aberrant lipid metabolism. We have established a Drosophila model with hyperactivated Wnt signaling caused by partial loss of axin, a key component of the Wnt cascade. The Axin mutant larvae are transparent and have severe adipocyte defects caused by up-regulation of ß-catenin transcriptional activities. We demonstrate pharmacologic mitigation of these phenotypes in Axin mutants by identifying bortezomib and additional peptide boronic acids. We show that the suppressive effect of peptide boronic acids on hyperactive Wnt signaling is dependent on α-catenin; the rescue effect is completely abolished with the depletion of α-catenin in adipocytes. These results indicate that rather than targeting the canonical Wnt signaling pathway directly, pharmacologic modulation of ß-catenin activity through α-catenin is a potentially attractive approach to attenuating Wnt signaling in vivo.
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Adipocitos/efectos de los fármacos , Ácidos Borónicos/farmacología , Péptidos/farmacología , Proteínas Wnt/metabolismo , Vía de Señalización Wnt/efectos de los fármacos , Animales , Proteína Axina/metabolismo , Drosophila/efectos de los fármacos , Drosophila/metabolismo , Transcripción Genética/efectos de los fármacos , Regulación hacia Arriba/efectos de los fármacos , beta Catenina/metabolismoRESUMEN
This study investigated and compared the microbial communities between a sequencing batch reactor (SBR) without carriers and a hybrid SBR with addition of carriers for the treatment of saline wastewater. The two systems were operated over 292 days with alternating aerobic/anoxic mode (temperature: 28â, salinity: 0.0-3.0%). High removal efficiency of chemical oxygen demand (COD) and total inorganic nitrogen (TIN) was achieved in both the SBR (above 86.7 and 95.4% respectively) and hybrid SBR (above 84.4 and 94.0%) at 0.0-2.5% salinity. Further increasing salinity to 3.0% decreased TIN removal efficiency to 78.4% in the hybrid SBR. Steep decline of biodiversity and relative abundance of ammonia-oxidizing bacteria (AOB) contributed to the worse performance. More genera related to sulfide-oxidizing and sulfate-reducing bacteria were detected in the hybrid SBR than the SBR at 3.0% salinity. The abundance of halotolerant bacteria increased with the salinity increase for both reactors, summing up to 25.5% in the suspended sludge (S-sludge) from the SBR, 28.9 and 22.9% in the S-sludge and biofilm taken from the hybrid SBR, respectively. Nitrification and denitrification via nitrate was the main nitrogen removal pathway in the SBR and hybrid SBR at 0.0 and 0.5% salinity, while partial nitrification and denitrification via nitrite became the key process for nitrogen removal in the two reactors when the salinity was increased to 1.0-3.0%. Higher abundance of anaerobic ammonium-oxidizing (ANAMMOX) and sulfide-oxidizing autotrophic denitrification (SOAD) bacteria were found in the hybrid SBR at 3.0% salinity.
Asunto(s)
Nitrificación , Eliminación de Residuos Líquidos/métodos , Aguas Residuales/química , Contaminantes Químicos del Agua/análisis , Amoníaco/química , Compuestos de Amonio/química , Procesos Autotróficos , Bacterias/metabolismo , Biopelículas , Análisis de la Demanda Biológica de Oxígeno , Reactores Biológicos/microbiología , Desnitrificación , Microbiota , Nitrógeno/metabolismo , Salinidad , Aguas del AlcantarilladoRESUMEN
E2F transcription factors are important regulators of cell proliferation and are frequently dysregulated in human malignancies. To identify novel regulators of E2F function, we used Drosophila as a model system to screen for mutations that modify phenotypes caused by reduced levels of dE2F1. This screen identified components of the Pumilio translational repressor complex (Pumilio, Nanos, and Brain tumor) as suppressors of dE2F1-RNAi phenotypes. Subsequent experiments provided evidence that Pumilio complexes repress dE2F1 levels and that this mechanism of post-transcriptional regulation is conserved in human cells. The human Pumilio homologs Pum 1 and Pum 2 repress the translation of E2F3 by binding to the E2F3 3' untranslated region (UTR) and also enhance the activity of multiple E2F3 targeting microRNAs (miRNAs). E2F3 is an oncogene with strong proliferative potential and is regularly dysregulated or overexpressed in cancer. Interestingly, Pumilio/miRNA-mediated regulation of E2F3 is circumvented in cancer cells in several different ways. Bladder carcinomas selectively down-regulate miRNAs that cooperate with Pumilio to target E2F3, and multiple tumor cell lines shorten the 3' end of the E2F3 mRNA, removing the Pumilio regulatory elements. These studies suggest that Pumilio-miRNA repression of E2F3 translation provides an important level of E2F regulation that is frequently abrogated in cancer cells.
Asunto(s)
Proteínas de Drosophila/metabolismo , Factores de Transcripción E2F/genética , Regulación Neoplásica de la Expresión Génica , MicroARNs/metabolismo , Proteínas de Unión al ARN/metabolismo , Factores de Transcripción/metabolismo , Regiones no Traducidas 3'/genética , Animales , Línea Celular Tumoral , Drosophila , Proteínas de Drosophila/genética , Factores de Transcripción E2F/metabolismo , Células HeLa , Humanos , MicroARNs/genética , Procesamiento Postranscripcional del ARN , Proteínas de Unión al ARN/genética , Factores de Transcripción/genéticaRESUMEN
Cyclin-dependent kinase 8 (CDK8) and its regulatory partner Cyclin C (CycC) play conserved roles in modulating RNA polymerase II (Pol II)-dependent gene expression. To understand the structure and function relations of CDK8, we analyzed the structures of human and Drosophila CDK8 proteins using molecular dynamics simulations, combined with functional analyses in Drosophila. Specifically, we evaluated the structural differences between hCDK8 and dCDK8 to predict the effects of the LXXLL motif mutation (AQKAA), the P154L mutations, and drug binding on local structures of the CDK8 proteins. First, we have observed that both the LXXLL motif and the kinase activity of CDK8 are required for the normal larval-to-pupal transition in Drosophila. Second, our molecular dynamic analyses have revealed that hCDK8 has higher hydrogen bond occupation of His149-Asp151 and Asp151-Asn156 than dCDK8. Third, the substructure of Asp282, Phe283, Arg285, Thr287 and Cys291 can distinguish human and Drosophila CDK8 structures. In addition, there are two hydrogen bonds in the LXXLL motif: a lower occupation between L312 and L315, and a relatively higher occupation between L312 and L316. Human CDK8 has higher hydrogen bond occupation between L312 and L316 than dCDK8. Moreover, L312, L315 and L316 in the LXXLL motif of CDK8 have the specific pattern of hydrogen bonds and geometries, which could be crucial for the binding to nuclear receptors. Furthermore, the P154L mutation dramatically decreases the hydrogen bond between L312 and L315 in hCDK8, but not in dCDK8. The mutations of P154L and AQKAA modestly alter the local structures around residues 154. Finally, we identified the inhibitor-induced conformational changes of hCDK8, and our results suggest a structural difference in the drug-binding site between hCDK8 and dCDK8. Taken together, these results provide the structural insights into the roles of the LXXLL motif and the kinase activity of CDK8 in vivo.
Asunto(s)
Secuencias de Aminoácidos , Sitios de Unión , Quinasa 8 Dependiente de Ciclina/química , Proteínas de Drosophila/química , Modelos Moleculares , Dominios y Motivos de Interacción de Proteínas , Inhibidores de Proteínas Quinasas/química , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Animales , Quinasa 8 Dependiente de Ciclina/antagonistas & inhibidores , Proteínas de Drosophila/antagonistas & inhibidores , Humanos , Enlace de Hidrógeno , Ligandos , Conformación Molecular , Mutación , Unión Proteica , Inhibidores de Proteínas Quinasas/farmacología , Especificidad de la Especie , Relación Estructura-ActividadRESUMEN
The complex interplay between genetic and environmental factors, such as diet and lifestyle, defines the initiation and progression of multifactorial diseases, including cancer, cardiovascular and metabolic diseases, and neurological disorders. Given that most of the studies have been performed in controlled experimental settings to ensure the consistency and reproducibility, the impacts of environmental factors, such as dietary perturbation, on the development of animals with different genotypes and the pathogenesis of these diseases remain poorly understood. By analyzing the cdk8 and cyclin C (cycC) mutant larvae in Drosophila, we have previously reported that the CDK8-CycC complex coordinately regulates lipogenesis by repressing dSREBP (sterol regulatory element-binding protein)-activated transcription and developmental timing by activating EcR (ecdysone receptor)-dependent gene expression. Here we report that dietary nutrients, particularly proteins and carbohydrates, modulate the developmental timing through the CDK8/CycC/EcR pathway. We observed that cdk8 and cycC mutants are sensitive to the levels of dietary proteins and seven amino acids (arginine, glutamine, isoleucine, leucine, methionine, threonine, and valine). Those mutants are also sensitive to dietary carbohydrates, and they are more sensitive to monosaccharides than disaccharides. These results suggest that CDK8-CycC mediates the dietary effects on lipid metabolism and developmental timing in Drosophila larvae.
Asunto(s)
Quinasa 8 Dependiente de Ciclina/fisiología , Proteínas de Drosophila/fisiología , Larva/metabolismo , Necesidades Nutricionales/fisiología , Animales , Ciclina C/metabolismo , Ciclina C/fisiología , Quinasa 8 Dependiente de Ciclina/metabolismo , Dieta , Proteínas en la Dieta/metabolismo , Drosophila/embriología , Drosophila/genética , Proteínas de Drosophila/metabolismo , Expresión Génica , Reproducibilidad de los ResultadosRESUMEN
Epigenetic regulation of gene expression by histone-modifying corepressor complexes is central to normal animal development. The NAD(+)-dependent deacetylase and gene repressor SIRT1 removes histone H4K16 acetylation marks and facilitates heterochromatin formation. However, the mechanistic contribution of SIRT1 to epigenetic regulation at euchromatic loci and whether it acts in concert with other chromatin-modifying activities to control developmental gene expression programs remain unclear. We describe here a SIRT1 corepressor complex containing the histone H3K4 demethylase LSD1/KDM1A and several other LSD1-associated proteins. SIRT1 and LSD1 interact directly and play conserved and concerted roles in H4K16 deacetylation and H3K4 demethylation to repress genes regulated by the Notch signaling pathway. Mutations in Drosophila SIRT1 and LSD1 orthologs result in similar developmental phenotypes and genetically interact with the Notch pathway in Drosophila. These findings offer new insights into conserved mechanisms of epigenetic gene repression and regulation of development by SIRT1 in metazoans.
Asunto(s)
Proteínas de Drosophila/fisiología , Drosophila melanogaster/genética , Oxidorreductasas N-Desmetilantes/fisiología , Receptores Notch/genética , Sirtuina 1/fisiología , Animales , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/crecimiento & desarrollo , Epigénesis Genética , Regulación del Desarrollo de la Expresión Génica , Histonas/metabolismo , Inmunoprecipitación , Mutación , Oxidorreductasas N-Desmetilantes/genética , Oxidorreductasas N-Desmetilantes/metabolismo , Fenotipo , Receptores Notch/metabolismo , Sirtuina 1/genética , Sirtuina 1/metabolismoRESUMEN
Multiple large-scale epidemiological studies have identified obesity as an important risk factor for a variety of human cancers, particularly cancers of the uterus, gallbladder, kidney, liver, colon, and ovary, but there is much uncertainty regarding how obesity increases the cancer risks. Given that obesity has been consistently identified as a major risk factor for uterine tumors, the most common malignancies of the female reproductive system, we use uterine tumors as a pathological context to survey the relevant literature and propose a novel hypothesis: chronic downregulation of the cyclin-dependent kinase 8 (CDK8) module, composed of CDK8 (or its paralog CDK19), Cyclin C, MED12 (or MED12L), and MED13 (or MED13L), by elevated insulin or insulin-like growth factor signaling in obese women may increase the chances to dysregulate the activities of transcription factors regulated by the CDK8 module, thereby increasing the risk of uterine tumors. Although we focus on endometrial cancer and uterine leiomyomas (or fibroids), two major forms of uterine tumors, our model may offer additional insights into how obesity increases the risk of other types of cancers and diseases. To illustrate the power of model organisms for studying human diseases, here we place more emphasis on the findings obtained from Drosophila melanogaster.
Asunto(s)
Drosophila melanogaster , Obesidad/complicaciones , Neoplasias Uterinas/patología , Animales , Quinasa 8 Dependiente de Ciclina/genética , Modelos Animales de Enfermedad , Proteínas de Drosophila/genética , Femenino , Humanos , Complejo Mediador/genética , Factores de RiesgoRESUMEN
Type I IFNs are key cytokines mediating innate antiviral immunity. cGMP-AMP synthase, ritinoic acid-inducible protein 1 (RIG-I)-like receptors, and Toll-like receptors recognize microbial double-stranded (ds)DNA, dsRNA, and LPS to induce the expression of type I IFNs. These signaling pathways converge at the recruitment and activation of the transcription factor IRF-3 (IFN regulatory factor 3). The adaptor proteins STING (stimulator of IFN genes), MAVS (mitochondrial antiviral signaling), and TRIF (TIR domain-containing adaptor inducing IFN-ß) mediate the recruitment of IRF-3 through a conserved pLxIS motif. Here we show that the pLxIS motif of phosphorylated STING, MAVS, and TRIF binds to IRF-3 in a similar manner, whereas residues upstream of the motif confer specificity. The structure of the IRF-3 phosphomimetic mutant S386/396E bound to the cAMP response element binding protein (CREB)-binding protein reveals that the pLxIS motif also mediates IRF-3 dimerization and activation. Moreover, rotavirus NSP1 (nonstructural protein 1) employs a pLxIS motif to target IRF-3 for degradation, but phosphorylation of NSP1 is not required for its activity. These results suggest a concerted mechanism for the recruitment and activation of IRF-3 that can be subverted by viral proteins to evade innate immune responses.