Atomic distribution and local structure in-situ VII from in situ neutron diffraction.

Ice polymorphs show extraordinary structural diversity depending on pressure and temperature. The behavior of hydrogen-bond disorder not only is a key ingredient for their structural diversity but also controls their physical properties. However, it has been a challenge to determine the details of the disordered structure in ice polymorphs under pressure, because of the limited observable reciprocal space and inaccuracies related to high-pressure techniques. Here, we present an elucidation of the disordered structure of ice VII, the dominant high-pressure form of water, at 2.2 GPa and 298 K, from both single-crystal and powder neutron-diffraction techniques. We reveal the three-dimensional atomic distributions from the maximum entropy method and unexpectedly find a ring-like distribution of hydrogen in contrast to the commonly accepted discrete sites. In addition, total scattering analysis at 274 K clarified the difference in the intermolecular structure from ice VIII, the ordered counterpart of ice VII, despite an identical molecular geometry. Our complementary structure analyses robustly demonstrate the unique disordered structure of ice VII. Furthermore, these findings are related to proton dynamics, which drastically vary with pressure, and will contribute to an understanding of the structural origin of anomalous physical properties of ice VII under pressures.

Anomalous hydrogen dynamics of the ice VII-VIII transition revealed by high-pressure neutron diffraction.

Above 2 GPa the phase diagram of water simplifies considerably and exhibits only two solid phases up to 60 GPa, ice VII and ice VIII. The two phases are related to each other by hydrogen ordering, with the oxygen sublattice being essentially the same. Here we present neutron diffraction data to 15 GPa which reveal that the rate of hydrogen ordering at the ice VII-VIII transition decreases strongly with pressure to reach timescales of minutes at 10 GPa. Surprisingly, the ordering process becomes more rapid again upon further compression. We show that such an unusual change in transition rate can be explained by a slowing down of the rotational dynamics of water molecules with a simultaneous increase of translational motion of hydrogen under pressure, as previously suspected. The observed cross-over in the hydrogen dynamics in ice is likely the origin of various hitherto unexplained anomalies of ice VII in the 10-15 GPa range reported by Raman spectroscopy, X-ray diffraction, and proton conductivity.

Increased hydrostatic pressure induces nuclear translocation of DAF-16/FOXO in C. elegans.

Mechanical stimulation is well known to be important for maintaining tissue and organ homeostasis. Here, we found that hydrostatic pressure induced nuclear translocation of a forkhead box O (FOXO) transcription factor DAF-16, in C. elegans within minutes, whereas the removal of this pressure resulted in immediate export of DAF-16 to the cytoplasm. We also monitored DAF-16-dependent transcriptional changes by exposure to 1 MPa pressure for 5 min, and found significant changes in collagen and other genes in a DAF-16 dependent manner. Lifespan was markedly prolonged with exposure to cyclic pressure treatment (1 MPa once a day for 5 min from L1 larvae until death). Furthermore, age-dependent decline in locomotor activity was suppressed by the treatment. In contrast, the nuclear translocation of the yes-associated protein YAP-1 was not induced under the same pressure conditions. Thus, moderate hydrostatic pressure improves ageing progression through activation of DAF-16/FOXO in C. elegans.

Behavior of intermolecular interactions in α-glycine under high pressure.

Pressure-response on the crystal structure of deuterated α-glycine was investigated at room temperature, using powder and single-crystal X-ray diffraction, and powder neutron diffraction measurements under high pressure. No phase change was observed up to 8.7 GPa, although anisotropy of the lattice compressibility was found. No significant changes in the compressibility and the intramolecular distance between non-deuterated α-glycine and deuterated α-glycine were observed. Neutron diffraction measurements indicated the distance of the intermolecular D⋯O bond along with the c-axis increased with compression up to 6.4 GPa. The distance of another D⋯O bond along with the a-axis decreased with increasing pressure and became the shortest intermolecular hydrogen bond above 3 GPa. In contrast, the lengths of the bifurcated N-D⋯O and C-D⋯O hydrogen bonds, which are formed between the layers of the α-glycine molecules along the b-axis, decreased significantly with increasing pressure. The decrease of the intermolecular distances resulted in the largest compressibility of the b-axis, compared to the other two axes. The Hirshfeld analysis suggested that the reduction of the void region size, rather than shrinkage of the strong N-D⋯O hydrogen bonds, occurred with compression.

Pressure-induced oligomerization of benzene at room temperature as a precursory reaction of amorphization.

Oligomerization of benzene at high pressures up to 16 GPa was investigated at room temperature using an opposed-anvil type pressure apparatus. The recovered samples were analyzed using GC-MS to identify and quantify the products after the high-pressure experiments. Some structural isomers of benzene dimer as well as biphenyl, naphthalene, and terphenyl isomers were detected at pressures higher than 13 GPa. The molar yield of the polycyclic aromatic hydrocarbons increased concomitantly with increasing pressure, although benzene still remained. The oligomerization is likely to occur when the neighbor distance of the benzene molecules exceeds the threshold of the reaction distance. The oligomerization is regarded as a precursory phenomenon of the amorphization that occurs at higher pressure.

Hydrogen bond symmetrisation in D2O ice observed by neutron diffraction.

Hydrogen bond symmetrisation is the phenomenon where a hydrogen atom is located at the centre of a hydrogen bond. Theoretical studies predict that hydrogen bonds in ice VII eventually undergo symmetrisation upon increasing pressure, involving nuclear quantum effect with significant isotope effect and drastic changes in the elastic properties through several intermediate states with varying hydrogen distribution. Despite numerous experimental studies conducted, the location of hydrogen and hence the transition pressures reported up to date remain inconsistent. Here we report the atomic distribution of deuterium in D2O ice using neutron diffraction above 100 GPa and observe the transition from a bimodal to a unimodal distribution of deuterium at around 80 GPa. At the transition pressure, a significant narrowing of the peak widths of 110 is also observed, attributed to the structural relaxation by the change of elastic properties.

Crystal structure of potassium chloride monohydrate: water intercalation into the B1 structure of KCl under high pressure. Corrigendum.

In the paper by Yamashita et al. [Acta Cryst. (2022), C78, 749-754], an incorrect phrase is updated.

Radiocesium-bearing microparticles found in dry deposition fallout samples immediately after the Fukushima nuclear accident in the Kanto region, Japan.

Radiocesium released by the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident still exists in the environment in two forms: adsorbed species on mineral particles in the soil and microparticles containing radiocesium mainly composed of silicate glass (CsMPs). CsMPs are dispersed not only around the FDNPP but also over a wide area of the Kanto region. The behavior and characteristics of CsMPs must be investigated to evaluate the impact of the FDNPP accident. Deposited particles including radiocesium were wiped from metal handrails on balconies and car hoods using tissue papers at six locations in the Kanto region (Tokai village, Ushiku City, Abiko City, Chiba City, Kawaguchi City, and Arakawa Ward) between March 15 and 21, 2011. CsMPs were isolated from the samples, and their characteristics were investigated. In total, 106 CsMPs derived from Unit 2 were successfully separated from 13 tissue paper samples. The radiation images of the two types of CsMPs discovered in Ushiku City demonstrate that CsMPs can easily become susceptible to fragmentation over time, even in the absence of weathering effects.

Slightly Hydrogen-Ordered State of Ice IV Evidenced by In Situ Neutron Diffraction.

Ice IV is a metastable high-pressure phase of ice in which the water molecules exhibit orientational disorder. Although orientational ordering is commonly observed for other ice phases, it has not been reported for ice IV. We conducted in situ powder neutron diffraction experiments for DCl-doped D2O ice IV to investigate its hydrogen ordering. We found abrupt changes in the temperature derivative of unit-cell volume, dV/dT, at ∼120 K, and revealed a slightly ordered structure at low temperatures based on the Rietveld method. The occupancy of the D1 site deviates from 0.5 in particular; it increased when samples were cooled at higher pressures and reached 0.174(14) at 2.38 GPa, 58 K. Our results evidence the presence of a low-symmetry hydrogen-ordered state corresponding to ice IV. It seems, however, difficult to experimentally access the completely ordered phase corresponding to ice IV by slow cooling at high pressure.

Temperature dependence of nitrogen solubility in bridgmanite and evolution of nitrogen storage capacity in the lower mantle.

Relative nitrogen abundance normalized by carbonaceous chondrites in the bulk silicate Earth appears to be depleted compared to other volatile elements. Especially, nitrogen behavior in the deep part of the Earth such as the lower mantle is not clearly understood. Here, we experimentally investigated the temperature dependence of nitrogen solubility in bridgmanite which occupies 75 wt.% of the lower mantle. The experimental temperature ranged from 1400 to 1700 °C at 28 GPa in the redox state corresponding to the shallow lower mantle. The maximum nitrogen solubility in bridgmanite (MgSiO3) increased from 1.8 ± 0.4 to 5.7 ± 0.8 ppm with increasing temperature from 1400 to 1700 °C. The nitrogen storage capacity of Mg-endmember bridgmanite under the current temperature conditions is 3.4 PAN (PAN: mass of present atmospheric nitrogen). Furthermore, the nitrogen solubility of bridgmanite increased with increasing temperature, in contrast to the nitrogen solubility of metallic iron. Thus, the nitrogen storage capacity of bridgmanite can be larger than that of metallic iron during the solidification of the magma ocean. Such a "hidden" nitrogen reservoir formed by bridgmanite in the lower mantle may have depleted the apparent nitrogen abundance ratio in the bulk silicate Earth.

The hydrogen-bond network in sodium chloride tridecahydrate: analogy with ice VI.

The structure of a recently found hyperhydrated form of sodium chloride (NaCl·13H2O and NaCl·13D2O) has been determined by in situ single-crystal neutron diffraction at 1.7 GPa and 298 K. It has large hydrogen-bond networks and some water molecules have distorted bonding features such as bifurcated hydrogen bonds and five-coordinated water molecules. The hydrogen-bond network has similarities to ice VI in terms of network topology and disordered hydrogen bonds. Assuming the equivalence of network components connected by pseudo-symmetries, the overall network structure of this hydrate can be expressed by breaking it down into smaller structural units which correspond to the ice VI network structure. This hydrogen-bond network contains orientational disorder of water molecules in contrast to the known salt hydrates. An example is presented here for further insights into a hydrogen-bond network containing ionic species.

Crystal structure of potassium chloride monohydrate: water intercalation into the B1 structure of KCl under high pressure.

A new hydrate form of potassium chloride, KCl·H2O, is identified for the first time by in situ single-crystal X-ray diffraction under high pressure. It has a monoclinic structure with lattice parameters of a = 5.687 (7), b = 6.3969 (3), c = 8.447 (3) Šand ß = 107.08 (8)° at 2.23 (4) GPa and 295 K. The structure of this hydrate has K-Cl alignments similar to the B1 phase of anhydrous KCl, while water molecules intercalate among the ionic species. The coordination structures of the K and Cl atoms can be regarded as the intermediate states between the B1 and B2 phases of KCl. This finding provides a perspective on the structural interpretation of multicomponent materials and an additional candidate for bound water in salt-water systems under high pressure, such as inside of icy bodies.

Heat-Induced Dolomitization of Amorphous Calcium Magnesium Carbonate in a CO2-Filled Closed System.

We report a method to synthesize dolomite [CaMg(CO3)2] from amorphous calcium magnesium carbonate (ACMC) via solid-state transformation. When ACMC is heated in air, it does not crystallize into dolomite but decomposes into Mg calcite, magnesium oxide, and CO2. Hence, we heated ACMC in a closed system filled with CO2 gas (pCO2 >1.2 bar at 420 °C) and produced submicron-sized dolomite. Single-phase dolomite was obtained after dissolving impurities in the run products, such as northupite [Na3Mg(CO3)2Cl] and eitelite [Na2Mg(CO3)2], in water. Also, we investigated the crystallization process of dolomite by changing the heating temperature and heating time. Despite crystallization by solid-state transformation, the heated samples crystallized to dolomite via Ca-rich protodolomite with no ordering reflection of X-ray diffraction as previously observed for hydrothermal synthesis. The results demonstrated that this crystallization pathway is kinetically favored even in solid-state transformation and that the Ca-rich protodolomite phase preferentially crystallizes during heating, leading to phase separation from the amorphous phase. Therefore, the crystallization process via protodolomite as a precursor is a common mechanism in dolomite crystallization, suggesting the presence of kinetic barriers other than hydration of cations.

Super-hydration and reduction of manganese oxide minerals at shallow terrestrial depths.

Manganese oxides are ubiquitous marine minerals which are redox sensitive. As major components of manganese nodules found on the ocean floor, birnessite and buserite have been known to be two distinct water-containing minerals with manganese octahedral interlayer separations of ~7 Å and ~10 Å, respectively. We show here that buserite is a super-hydrated birnessite formed near 5 km depth conditions. As one of the most hydrous minerals containing ca. 34.5 wt. % water, super-hydrated birnessite, i.e., buserite, remains stable up to ca. 70 km depth conditions, where it transforms into manganite by releasing ca. 24.3 wt. % water. Subsequent transformations to hausmannite and pyrochroite occur near 100 km and 120 km depths, respectively, concomitant with a progressive reduction of Mn4+ to Mn2+. Our work forwards an abiotic geochemical cycle of manganese minerals in subduction and/or other aqueous terrestrial environments, with implications for water storage and cycling, and the redox capacity of the region.

Subduction-related oxidation of the sublithospheric mantle evidenced by ferropericlase and magnesiowüstite diamond inclusions.

Ferropericlase (Mg,Fe)O is the second most abundant mineral in Earth's lower mantle and a common inclusion found in subcratonic diamonds. Pyrolitic mantle has Mg# (100 × Mg/(Mg+Fe)) ~89. However, ferropericlase inclusions in diamonds show a broad range of Mg# between 12 and 93. Here we use Synchrotron Mössbauer Source (SMS) spectroscopy and single-crystal X-ray diffraction to determine the iron oxidation state and structure of two magnesiowüstite and three ferropericlase inclusions in diamonds from São Luiz, Brazil. Inclusion Mg#s vary between 16.1 and 84.5. Ferropericlase inclusions contain no ferric iron within the detection limit of SMS, while both magnesiowüstite inclusions show the presence of monocrystalline magnesioferrite ((Mg,Fe)Fe3+2O4) with an estimated 47-53 wt% Fe2O3. We argue that the wide range of Fe concentrations observed in (Mg,Fe)O inclusions in diamonds and the appearance of magnesioferrite result from oxidation of ferropericlase triggered by the introduction of subducted material into sublithospheric mantle.

Possible functions of Dpp in gastropod shell formation and shell coiling.

We examined dpp expression patterns in the pulmonate snail Lymnaea stagnalis and analyzed the functions of dpp using the Dpp signal inhibitor dorsomorphin in order to understand developmental mechanisms and evolution of shell formation in gastropods. The dpp gene is expressed in the right half of the circular area around the shell gland at the trochophore stage and at the right-hand side of the mantle at the veliger stage in the dextral snails. Two types of shell malformations were observed when the Dpp signals were inhibited by dorsomorphin. When the embryos were treated with dorsomorphin at the 2-cell and blastula stages before the shell gland is formed, the juvenile shells grew imperfectly and were not mineralized. On the other hand, when treated at the trochophore and veliger stage after the shell gland formation, juvenile shells grew to show a cone-like form rather than a normal coiled form. These results indicated that dpp plays important roles in the formation and coiling of the shell in this gastropod species.

Behavior of light elements in iron-silicate-water-sulfur system during early Earth's evolution.

Hydrogen (H) is considered to be one of the candidates for light elements in the Earth's core, but the amount and timing of delivery have been unknown. We investigated the effects of sulfur (S), another candidate element in the core, on deuteration of iron (Fe) in iron-silicate-water system up to 6-12 GPa, ~ 1200 K using in situ neutron diffraction measurements. The sample initially contained saturated water (D2O) as Mg(OD)2 in the ideal composition (Fe-MgSiO3-D2O) of the primitive Earth. In the existence of water and sulfur, phase transitions of Fe, dehydration of Mg(OD)2, and formation of iron sulfide (FeS) and silicates occurred with increasing temperature. The deuterium (D) solubility (x) in iron deuterides (FeDx) increased with temperature and pressure, resulting in a maximum of x = 0.33(4) for the hydrous sample without S at 11.2 GPa and 1067 K. FeS was hardly deuterated until Fe deuteration had completed. The lower D concentrations in the S-containing system do not exceed the miscibility gap (x < ~ 0.4). Both H and S can be incorporated into solid Fe and other light elements could have dissolved into molten iron hydride and/or FeS during the later process of Earth's evolution.

Experimental evidence for the existence of a second partially-ordered phase of ice VI.

Ice exhibits extraordinary structural variety in its polymorphic structures. The existence of a new form of diversity in ice polymorphism has recently been debated in both experimental and theoretical studies, questioning whether hydrogen-disordered ice can transform into multiple hydrogen-ordered phases, contrary to the known one-to-one correspondence between disordered ice and its ordered phase. Here, we report a high-pressure phase, ice XIX, which is a second hydrogen-partially-ordered phase of ice VI. We demonstrate that disordered ice undergoes different manners of hydrogen ordering, which are thermodynamically controlled by pressure in the case of ice VI. Such multiplicity can appear in all disordered ice, and it widely provides a research approach to deepen our knowledge, for example of the crucial issues of ice: the centrosymmetry of hydrogen-ordered configurations and potentially induced (anti-)ferroelectricity. Ultimately, this research opens up the possibility of completing the phase diagram of ice.

High nitrogen solubility in stishovite (SiO2) under lower mantle conditions.

Nitrogen is a crucial volatile element in the early Earth's evolution and the origin of life. Despite its importance, nitrogen's behavior in the Earth's interior remains poorly understood. Compared to other volatile elements, nitrogen is depleted in the Earth's atmosphere (the so-called "missing nitrogen"), calling for a hidden deep reservoir. To investigate nitrogen's behavior in the deep Earth including how the reservoir formed, high-pressure and high-temperature experiments were conducted at 28 GPa and 1,400-1,700 °C. To reproduce the conditions in the lower mantle, the redox was controlled using a Fe-FeO buffer. We observed that depending on the temperature conditions, stishovite can incorporate up to 90-404 ppm nitrogen, experimentally demonstrating that stishovite has the highest nitrogen solubility among the deep mantle minerals. Stishovite is the main mineral component of subducted nitrogen-rich sedimentary rocks and eroded continental crust that are eventually transported down to the lower mantle. Our results suggest that nitrogen could have been continuously transported into the lower mantle via subduction, ever since plate tectonics began.

Ice Ic without stacking disorder by evacuating hydrogen from hydrogen hydrate.

Water freezes below 0 °C at ambient pressure ordinarily to ice Ih, with hexagonal stacking sequence. Under certain conditions, ice with a cubic stacking sequence can also be formed, but ideal ice Ic without stacking-disorder has never been formed until recently. Here we demonstrate a route to obtain ice Ic without stacking-disorder by degassing hydrogen from the high-pressure form of hydrogen hydrate, C2, which has a host framework isostructural with ice Ic. The stacking-disorder free ice Ic is formed from C2 via an intermediate amorphous or nano-crystalline form under decompression, unlike the direct transformations occurring in ice XVI from neon hydrate, or ice XVII from hydrogen hydrate. The obtained ice Ic shows remarkable thermal stability, until the phase transition to ice Ih at 250 K, originating from the lack of dislocations. This discovery of ideal ice Ic will promote understanding of the role of stacking-disorder on the physical properties of ice as a counter end-member of ice Ih.