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1.
Vet Res ; 55(1): 21, 2024 Feb 16.
Artículo en Inglés | MEDLINE | ID: mdl-38365748

RESUMEN

The emergence of transferable linezolid resistance genes poses significant challenges to public health, as it does not only confer linezolid resistance but also reduces susceptibility to florfenicol, which is widely used in the veterinary field. This study evaluated the genetic characteristics of linezolid-resistant Staphylococcus aureus strains isolated from pig carcasses and further clarified potential resistance and virulence mechanisms in a newly identified sequence type. Of more than 2500 strains isolated in a prior study, 15 isolated from pig carcasses exhibited linezolid resistance (minimum inhibitory concentration ≥ 8 mg/L). The strains were characterized in detail by genomic analysis. Linezolid-resistant S. aureus strains exhibited a high degree of genetic lineage diversity, with one strain (LNZ_R_SAU_64) belonging to ST8004, which has not been reported previously. The 15 strains carried a total of 21 antibiotic resistance genes, and five carried mecA associated with methicillin resistance. All strains harbored cfr and fexA, which mediate resistance to linezolid, phenicol, and other antibiotics. Moreover, the strains carried enterotoxin gene clusters, including the hemolysin, leukotoxin, and protease genes, which are associated with humans or livestock. Some genes were predicted to be carried in plasmids or flanked by ISSau9 and the transposon Tn554, thus being transmittable between staphylococci. Strains carrying the plasmid replicon repUS5 displayed high sequence similarity (99%) to the previously reported strain pSA737 in human clinical samples in the United States. The results illustrate the need for continuous monitoring of the prevalence and transmission of linezolid-resistant S. aureus isolated from animals and their products.


Asunto(s)
Staphylococcus aureus Resistente a Meticilina , Infecciones Estafilocócicas , Enfermedades de los Porcinos , Humanos , Animales , Porcinos , Linezolid/farmacología , Staphylococcus aureus/genética , Staphylococcus aureus Resistente a Meticilina/genética , Antibacterianos/farmacología , Infecciones Estafilocócicas/veterinaria , Infecciones Estafilocócicas/genética , Genómica , República de Corea , Pruebas de Sensibilidad Microbiana/veterinaria , Farmacorresistencia Bacteriana/genética , Enfermedades de los Porcinos/epidemiología
2.
Int J Mol Sci ; 22(21)2021 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-34768762

RESUMEN

The use of phenicol antibiotics in animals has increased. In recent years, it has been reported that the transferable gene mediates phenicol-oxazolidinone resistance. This study analyzed the prevalence and characteristics of phenicol-oxazolidinone resistance genes in Enterococcus faecalis and Enterococcus faecium isolated from food-producing animals and meat in Korea in 2018. Furthermore, for the first time, we reported the genome sequence of E. faecalis strain, which possesses the phenicol-oxazolidinone resistance gene on both the chromosome and plasmid. Among the 327 isolates, optrA, poxtA, and fexA genes were found in 15 (4.6%), 8 (2.5%), and 17 isolates (5.2%), respectively. Twenty E. faecalis strains carrying resistance genes belonged to eight sequence types (STs), and transferability was found in 17 isolates. The genome sequences revealed that resistant genes were present in the chromosome or plasmid, or both. In strains EFS17 and EFS108, optrA was located downstream of the ermA and ant(9)-1 genes. The strains EFS36 and EFS108 harboring poxtA-encoding plasmid cocarried fexA and cfr(D). These islands also contained IS1216E or the transposon Tn554, enabling the horizontal transfer of the phenicol-oxazolidinone resistance with other antimicrobial-resistant genes. Our results suggest that it is necessary to promote the prudent use of antibiotics through continuous monitoring and reevaluation.


Asunto(s)
Antiinfecciosos/farmacología , Cloranfenicol/farmacología , Farmacorresistencia Bacteriana Múltiple/genética , Enterococcus faecalis/genética , Enterococcus faecium/genética , Carne/microbiología , Oxazolidinonas/farmacología , Animales , Bovinos/microbiología , Biología Computacional , Enterococcus faecalis/efectos de los fármacos , Enterococcus faecalis/aislamiento & purificación , Enterococcus faecium/efectos de los fármacos , Enterococcus faecium/aislamiento & purificación , Análisis de los Alimentos , Transferencia de Gen Horizontal , Genes Bacterianos/efectos de los fármacos , Genoma Bacteriano , Tipificación de Secuencias Multilocus , Plásmidos , República de Corea , Porcinos/microbiología , Secuenciación Completa del Genoma
3.
Foodborne Pathog Dis ; 17(11): 720-727, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32830987

RESUMEN

Colistin is an important antibiotic currently used to manage infections caused by multidrug-resistant pathogens in both humans and livestock animals. A new mobile colistin-resistance (mcr-9) gene was recently discovered; this discovery highlighted the need for rigorous monitoring of bacterial resistance against colistin. Salmonella is one of the major pathogens responsible for foodborne illnesses; however, there is minimal information regarding the presence of mcr genes in foodborne Salmonella strains. The aim of this study was to investigate the presence of mcr genes among 178 Salmonella strains isolated from chicken meat in Korea. Antimicrobial susceptibility was measured using the broth microdilution method. Bioinformatics characterization of colistin-resistant strains and genetic environment of the mcr-9 gene were analyzed using next-generation sequencing. Transferability of the mcr-9 carrying colistin-resistant Salmonella strain was tested using broth-mating conjugation. Thirteen of the 178 Salmonella isolates showed colistin resistance, but only one strain, Salmonella Dessau ST14 (KUFSE-SAL043) from a traditional chicken market in Korea, carried an mcr family gene, mcr-9. This strain also carried other acquired antimicrobial resistance genes such as blaTEM-1B, qnrS1, and aac(6')-Iaa. Only the IncX1 plasmid replicon type was detected in this strain. In the strain KUFSE-SAL043, the mcr-9 gene was located between two insertion sequences, IS903B and IS26, followed by the downstream regulatory genes qseB-like and qseC-like, which were located between IS1R and ΔIS1R. Conjugation tests revealed that the mcr-9 gene was successfully transferred to Escherichia coli J53 at a mean frequency of 2.03 × 10-7. This is the first report of a transferable mcr-9 gene in Salmonella isolated from chicken meat in Korea, highlighting the possibility of transfer of colistin resistance. Therefore, the wide use of colistin should be reconsidered, and a One Health perspective should be adopted to monitor the antimicrobial resistance of Enterobacteriaceae strains in humans, livestock, and the environment.


Asunto(s)
Pollos/microbiología , Colistina/farmacología , Farmacorresistencia Bacteriana , Carne/microbiología , Salmonella/aislamiento & purificación , Animales , Antibacterianos/farmacología , Farmacorresistencia Bacteriana/genética , Contaminación de Alimentos , Microbiología de Alimentos , Genes Bacterianos , Pruebas de Sensibilidad Microbiana , República de Corea , Salmonella/genética
4.
Artículo en Inglés | MEDLINE | ID: mdl-28652229

RESUMEN

We investigated an outbreak of enterotoxigenic Escherichia coli (ETEC) O159:H20 associated with the consumption of a tossed-noodle dish in a high school in 2016. Thirty-three ETEC strains isolated from clinical and food samples were genetically indistinguishable. The outbreak strains were resistant to third-generation cephalosporins and harbored a blaCTX-M-15 gene on a 97-kb self-transferable IncK plasmid. This is the first outbreak caused by CTX-M-15-producing ETEC strains.


Asunto(s)
Escherichia coli Enterotoxigénica/metabolismo , Infecciones por Escherichia coli/epidemiología , beta-Lactamasas/metabolismo , Cefalosporinas/uso terapéutico , Brotes de Enfermedades , Escherichia coli Enterotoxigénica/efectos de los fármacos , Humanos , Plásmidos/genética , República de Corea/epidemiología
5.
World J Microbiol Biotechnol ; 28(4): 1813-6, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22805965

RESUMEN

We analyzed the distribution of phylogenetic groups of foodborne Escherichia coli isolates. We also investigated the prevalence of virulence-associated genes of diarrheagenic E. coli. In total, 162 E. coli isolated from foods (raw meat, fish, and processed foods) were collected in Korea. Approximately 90% of the foodborne isolates belonged to phylogenetic groups A and B1, whereas 1.2% were allocated to group B2, and 9.3% to D. Multiplex polymerase chain reaction (PCR) assays were used to detect the following: stx (1) and stx (2) to identify Shiga toxin-producing E. coli (STEC), eae and bfpA to identify enteropathogenic E. coli (EPEC), ipaH for enteroinvasive E. coli, CVD432 for enteroaggregative E. coli, and lt and st for enterotoxigenic E. coli (ETEC). The presence of daaD in diffusely adherent E. coli was examined by singleplex PCR. Of the 162 foodborne E. coli isolates, three (1.9%) were confirmed to be pathogenic E. coli: STEC, ETEC, and atypical EPEC based on their possession of stx (1), st, and eae, and the pathogenic strains were isolated in beef, rockfish, and pork, respectively. Molecular typing was conducted by multilocus sequence typing to investigate the genetic relationships among the pathogenic strains. All isolates positive for virulence genes had different mulilocus sequence typing profiles representing different sequence types (ST) of ST101, ST1815, and ST1820. These results indicate that some food samples were contaminated with pathogenic E. coli.


Asunto(s)
Proteínas de Escherichia coli/genética , Escherichia coli/clasificación , Escherichia coli/genética , Microbiología de Alimentos , Filogenia , Factores de Virulencia/genética , Análisis por Conglomerados , ADN Bacteriano/genética , Escherichia coli/aislamiento & purificación , Genotipo , Corea (Geográfico) , Tipificación de Secuencias Multilocus , Reacción en Cadena de la Polimerasa , República de Corea
6.
J Food Prot ; 85(5): 844-848, 2022 05 01.
Artículo en Inglés | MEDLINE | ID: mdl-35294006

RESUMEN

ABSTRACT: This study aimed to monitor microbial contamination levels in a variety of health functional foods and to establish new microbial criteria. Indicator organisms (i.e., aerobic bacteria, coliform bacteria, and Escherichia coli) were monitored in 10 health functional food categories (743 items, 3,715 samples). The mean total aerobic counts of ginseng and Korean red ginseng were -0.35 and -0.74 log CFU/g; and the mean total coliform counts were -1.4 and -1.39 log CFU/g, respectively. In addition, the mean total coliform counts of fiber and protein products were -1.34 and -1.22 log CFU/g, respectively. However, no aerobic or coliform cells were detected in any other health functional food products (vitamins, minerals, probiotics, milk thistle extract, propolis, eicosapentaenoic acid, docosahexaenoic acid, or lutein products), and no E. coli was detected in any of the categories. These results can potentially be used to update the microbial criteria of the Health Functional Food Code.


Asunto(s)
Bacterias , Alimentos Funcionales , Bacterias Aerobias , Recuento de Colonia Microbiana , Escherichia coli , Higiene
7.
J Microbiol Methods ; 200: 106543, 2022 09.
Artículo en Inglés | MEDLINE | ID: mdl-35870537

RESUMEN

This study was conducted to compare the efficiency of four enrichment methods of Enterohemorrhagic Escherichia coli by using the 16S rRNA amplicon sequencing and a predictive model. Four different methods (US FDA, ISO, Japan Food Hygiene Association and Korea Ministry of Food and Drug Safety) were used to enrich EHEC in kimchi inoculated with cocktails of EHEC strains (NCCP 13720, NCCP 13721, and NCCP 14134). The maximum growth rate (µmax) and lag phase duration (LPD) were compared using the Baranyi model, and 16S rRNA targeted sequencing was performed with samples at the end of the exponential phase. As a result, the µmax and LPD values of Baranyi model developed for the four enriched media ranged from 0.82 to 0.92 and from 2.35 to 2.68, respectively, suggesting that the growth of EHEC was similar in all four enrichment media. As for the relative abundance of the bacterial composition at the family level, Enterobacteriaceae was identified as the major component (>50%) in all four enriched media. The relative abundance of Enterobacteriaceae was highest (>90%) in the two enriched media with 20 mg/L novobiocin, demonstrating that significant growth of non-targeted bacteria takes place in enrichment broths utilizing <20 mg/L novobiocin or different antibiotics. In conclusion, this study suggests that all four enrichment broth are suitable for growing EHEC in kimchi and the use and concentration of antibiotics such as novobiocin in enrichment media may have a critical role in species diversity.


Asunto(s)
Escherichia coli Enterohemorrágica , Infecciones por Escherichia coli , Alimentos Fermentados , Antibacterianos/farmacología , Escherichia coli Enterohemorrágica/genética , Infecciones por Escherichia coli/microbiología , Microbiología de Alimentos , Humanos , Novobiocina , ARN Ribosómico 16S/genética
8.
Food Sci Nutr ; 9(12): 6866-6872, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34925814

RESUMEN

This study was performed to develop and validate a predictive growth model of pathogenic Escherichia coli to ensure the safety of fresh-cut produce. Samples were inoculated with a cocktail of seven E. coli strains of five pathotypes (EHEC, Enterohemorrhagic E. coli; ETEC, Enterotoxigenic E. coli; EPEC, Enteropathogenic E. coli; EIEC, Enteroinvasive E. coli, and EAEC, Enteroaggregative E. coli) and stored at 4, 10, 12, 15, 25, 30, and 37°C. Growth of pathogenic E. coli was observed above 12°C. The primary growth model for pathogenic E. coli in fresh-cut produce was developed based on the Baranyi model. The secondary model was developed as a function of temperature for lag phase duration (LPD) and maximum specific growth rate (µmax) based on the polynomial second-order model. The primary and secondary models for pathogenic E. coli were fitted with a high degree of goodness of fit (R2 ≥ 0.99). The bias factor (Bf), accuracy factor (Af), and root mean square error (RMSE) were 0.995, 1.011, and 0.084, respectively. The growth model we developed can provide useful data for assessing the quantitative microbial risk of pathogenic E. coli in fresh-cut produce intended for human consumption. In addition, it is thought to be widely available in industries that produce, process, distribute, and sell fresh-cut produce.

9.
Food Sci Biotechnol ; 30(11): 1455-1464, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34790429

RESUMEN

Owing to convenience, ease of preparation, and price, the consumption of commercial kimchi is gradually rising in South Korea. Here, we estimated the risk level posed by pathogenic Escherichia coli in commercial kimchi products using the quantitative microbial risk assessment (QMRA) approach to develop measures for preventing potential foodborne outbreaks from kimchi consumption. We collected 610 samples of commercial kimchi products produced in Korea, 267 kimchi samples from foreign countries imported to Korea, and 187 raw materials used in kimchi preparation, and analyzed them for contamination with pathogenic E. coli. A Predictive model was developed to observe the survival characteristics of pathogenic E. coli. A dose-response model was selected, and the risk level was estimated using @RISK software. Although a prior epidemiological study indicated the frequent occurrence of foodborne outbreaks arising from contaminated kimchi products consumed in food service facilities, we found a low probability of foodborne illness caused by pathogenic E. coli in commercial kimchi products.

10.
J Microbiol Biotechnol ; 31(5): 733-739, 2021 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-33820890

RESUMEN

Acinetobacter strains are widely present in the environment. Some antimicrobial-resistant strains of this genus have been implicated in infections acquired in hospitals. Genetic similarities have been reported between Acinetobacter strains in nosocomial infections and those isolated from foods. However, the antimicrobial resistance of Acinetobacter strains in foods, such as meat, remains unclear. This study initially aimed to isolate Campylobacter strains; instead, strains of the genus Acinetobacter were isolated from meat products, and their antimicrobial resistance was investigated. In total, 58 Acinetobacter strains were isolated from 381 meat samples. Of these, 32 strains (38.6%) were from beef, 22 (26.5%) from pork, and 4 (4.8%) from duck meat. Antimicrobial susceptibility tests revealed that 12 strains were resistant to more than one antimicrobial agent, whereas two strains were multidrug-resistant; both strains were resistant to colistin. Cephalosporin antimicrobials showed high minimal inhibitory concentration against Acinetobacter strains. Resfinder analysis showed that one colistin-resistant strain carried mcr-4.3; this plasmid type was not confirmed, even when analyzed with PlasmidFinder. Analysis of the contig harboring mcr-4.3 using BLAST confirmed that this contig was related to mcr-4.3 of Acinetobacter baumannii. The increase in antimicrobial resistance in food production environments increases the resistance rate of Acinetobacter strains present in meat, inhibits the isolation of Campylobacter strains, and acts as a medium for the transmission of antimicrobial resistance in the environment. Therefore, further investigations are warranted to prevent the spread of antimicrobial resistance in food products.


Asunto(s)
Acinetobacter/efectos de los fármacos , Antibacterianos/farmacología , Farmacorresistencia Bacteriana , Carne/microbiología , Acinetobacter/genética , Acinetobacter/aislamiento & purificación , Animales , Campylobacter/aislamiento & purificación , Bovinos , Colistina/farmacología , Farmacorresistencia Bacteriana/efectos de los fármacos , Farmacorresistencia Bacteriana/genética , Microbiología de Alimentos , Genes Bacterianos , Pruebas de Sensibilidad Microbiana , Aves de Corral/microbiología , Alimentos Marinos/microbiología , Porcinos
11.
J Food Prot ; 84(10): 1819-1823, 2021 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-34115864

RESUMEN

ABSTRACT: Human noroviruses are major causes of nonbacterial gastroenteritis and are transmitted by both food and water, as well as person-to-person. Asymptomatic norovirus infection of food handlers may play a role in transmission. The outbreak of norovirus infections was recognized in the PyeongChang Winter Olympics, starting with security staff on 3 February 2018. The Ministry of Food and Drug Safety in the Republic of Korea conducted norovirus surveillance from asymptomatic food handlers of food-catering facilities related to the Olympics to prevent the spread of noroviruses. Rectal swab samples (707) from food handlers were collected and examined for noroviruses by using real-time reverse transcription PCR and conventional reverse transcription PCR. Five of 707 samples were identified as noroviruses. Genotypes of the norovirus-positive samples were determined with sequencing analysis. Identified genotypes of norovirus in asymptomatic food handlers included GI.3, GII.4, and GII.17. The GII.17 strain was prevalent among the genotypes, accounting for three of five detections. Food handlers with noroviruses detected in rectal swabs were excluded from cooking, and all food handled by infected food handlers was discarded. Surveillance of norovirus infection for food handlers contributed to preventing norovirus spread.


Asunto(s)
Infecciones por Caliciviridae , Norovirus , Preparaciones Farmacéuticas , Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/prevención & control , Brotes de Enfermedades , Manipulación de Alimentos , Genotipo , Humanos , Norovirus/genética , Filogenia , Reacción en Cadena en Tiempo Real de la Polimerasa
12.
J Microbiol Biotechnol ; 31(11): 1552-1558, 2021 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-34489379

RESUMEN

The diverse microbial communities in kimchi are dependent on fermentation period and temperature. Here, we investigated the effect of enterotoxigenic Escherichia coli (ETEC) during the fermentation of kimchi at two temperatures using high-throughput sequencing. There were no differences in pH between the control group, samples not inoculated with ETEC, and the ETEC group, samples inoculated with ETEC MFDS 1009477. The pH of the two groups, which were fermented at 10 and 25°C, decreased rapidly at the beginning of fermentation and then reached pH 3.96 and pH 3.62. In both groups, the genera Lactobacillus, Leuconostoc, and Weissella were predominant. Our result suggests that microbial communities during kimchi fermentation may be affected by the fermentation parameters, such as temperature and period, and not enterotoxigenic E. coli (ETEC).


Asunto(s)
Escherichia coli Enterotoxigénica , Alimentos Fermentados/microbiología , Microbiología de Alimentos , Microbiota , Brassica , Fermentación , Secuenciación de Nucleótidos de Alto Rendimiento , Concentración de Iones de Hidrógeno , Lactobacillus/clasificación , Leuconostoc/clasificación , ARN Ribosómico 16S/genética , Temperatura , Weissella/clasificación
13.
J Microbiol Biotechnol ; 20(7): 1107-13, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20668404

RESUMEN

Because conventional methods for detecting emetic-toxin-producing B. cereus are laborious and costly, various PCR assays, which are easy and cheap, have recently been reported. Therefore, this study estimated and compared the ability of various PCR assays to detect emetic-toxin-producing B. cereus strains isolated in Korea. The PCR assays were performed on 160 B. cereus strains, including 40 emetic-toxin-producing strains. Although the species-specific PCR assays were all shown to be highly specific, the sensitivities varied greatly. The accuracies of the primers were 97.5% (CER), 95.6% (EM1), 96.3% (RE234), 89.4% (CES), and 83.1% (Ces3R/CESR2). Moreover, the CER primer had a higher sensitivity (100%) than all the other primers tested, and a specificity of 96.7%. Thus, the CER primer was shown to be the most effective for screening the emetic-toxin-producing B. cereus strains tested in this study. However, the ability of these PCR assays to identify emetic-toxin-producing B. cereus should also be confirmed using other methods.


Asunto(s)
Bacillus cereus/metabolismo , Toxinas Bacterianas/biosíntesis , Depsipéptidos/biosíntesis , Microbiología de Alimentos , Reacción en Cadena de la Polimerasa/métodos , Bacillus cereus/genética , Toxinas Bacterianas/genética , Cartilla de ADN , ADN Bacteriano/química , ADN Bacteriano/genética , Depsipéptidos/genética , Corea (Geográfico) , Sensibilidad y Especificidad
14.
Food Sci Anim Resour ; 40(5): 758-771, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-32968728

RESUMEN

This study was to investigate the prevalence and characteristics of antimicrobial-resistant Staphylococcus aureus and methicillin-resistant S. aureus (MRSA) from 4,264 retail meat samples including beef, pork, and chicken in Korea between 2013 and 2018. A broth microdilution antimicrobial susceptibility testing was performed for S. aureus. Molecular typing by multilocus sequence typing (MLST), spa typing, and pulsed-field gel electrophoresis (PFGE), was performed on mecA-positive S. aureus strain. S. aureus was isolated at a rate of 18.2% (777/4,264), of which MRSA comprised 0.7% (29 strains). MLST analysis showed that 11 out of the 29 MRSA isolates were predominantly sequence type (ST) 398 (37.9%). In addition, ST72, ST692, ST188, ST9, and ST630 were identified in the MRSA isolates. The spa typing results were classified into 11 types and showed a high correlation with MLST. The antimicrobial resistance assays revealed that MRSA showed 100% resistance to cefoxitin and penicillin. In addition, resistance to tetracycline (62.1%), clindamycin (55.2%), and erythromycin (55.2%) was relatively high; 27 of the 29 MRSA isolates exhibited multidrug resistance. PFGE analysis of the 18 strains excluding the 11 ST398 strains exhibited a maximum of 100% homology and a minimum of 64.0% homology. Among these, three pairs of isolates showed 100% homology in PFGE; these results were consistent with the MLST and spa typing results. Identification of MRSA at the final consumption stage has potential risks, suggesting that continuous monitoring of retail meat products is required.

15.
J Med Microbiol ; 58(Pt 2): 261-266, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19141747

RESUMEN

This study was performed to assess the prevalence and genotypes of plasmid-borne extended-spectrum beta-lactamases (ESBLs) and AmpC beta-lactamases in Escherichia coli in Korea. A total of 576 isolates of E. coli was collected from 12 Korean hospitals during May and July 2007. A phenotypic confirmatory test detected ESBLs in 82 (14.2 %) of the 576 E. coli isolates. The most common types of ESBLs identified were CTX-M-14 (n=32) and CTX-M-15 (n=27). The prevalence and diversity of the CTX-M mutants, including CTX-M-15, CTX-M-27 and CTX-M-57, with significant hydrolytic activity against ceftazidime were increased. PCR experiments detected genes encoding plasmid-borne AmpC beta-lactamases in 15/56 cefoxitin-intermediate or cefoxitin-resistant isolates, and the most common type of AmpC beta-lactamase identified was DHA-1 (n=10). These data suggest that the incidence of ESBLs in E. coli has increased as a result of the dissemination of CTX-M enzymes in Korea. In addition, CTX-M-22, CTX-M-27 and CTX-M-57 have appeared in Korea.


Asunto(s)
Infecciones por Escherichia coli/microbiología , Proteínas de Escherichia coli/biosíntesis , Escherichia coli/enzimología , beta-Lactamasas/biosíntesis , beta-Lactamasas/genética , Antibacterianos/farmacología , ADN Bacteriano/genética , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Proteínas de Escherichia coli/genética , Humanos , Corea (Geográfico) , Pruebas de Sensibilidad Microbiana/métodos , Reacción en Cadena de la Polimerasa/métodos , beta-Lactamasas/clasificación , beta-Lactamas/farmacología
16.
Food Sci Biotechnol ; 28(3): 913-922, 2019 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-31093450

RESUMEN

Egg products are widely consumed in Korea and continue to be associated with risks of Staphylococcus aureus-induced food poisoning. This prompted the development of predictive mathematical models to understand growth kinetics of S. aureus in egg products in order to improve the production of domestic food items. Egg products were inoculated with S. aureus and observe S. aureus growth. The growth kinetics of S. aureus was used to calculate lag-phase duration (LPD) and maximum specific growth rate (µmax) using Baranyi model as the primary growth model. The secondary models provided predicted values for the temperature changes and were created using the polynomial equation for LPD and a square root model for µmax. In addition, root mean square errors (RMSE) were analyzed to evaluate the suitability of the mathematical models. The developed models demonstrated 0.16-0.27 RMSE, suggesting that models properly represented the actual growth of S. aureus in egg products.

17.
Front Public Health ; 7: 228, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31475130

RESUMEN

In August 2016, South Korea experienced a cholera outbreak that caused acute watery diarrhea in three patients. This outbreak was the first time in 15 years that an outbreak was not linked to an overseas source. To identify the cause and to study the epidemiological implications of this outbreak, we sequenced the whole genome of Vibrio cholerae isolates; three from each patient and one from a seawater sample. Herein we present comparative genomic data which reveals that the genome sequences of these four isolates are very similar. Interestingly, these isolates form a monophyletic clade with V. cholerae strains that caused an outbreak in the Philippines in 2011. The V. cholerae strains responsible for the Korean and Philippines outbreaks have almost identical genomes in which two unique genomic islands are shared, and they both lack SXT elements. Furthermore, we confirm that seawater is the likely source of this outbreak, which suggests the necessity for future routine surveillance of South Korea's seashore.

18.
Front Microbiol ; 10: 1683, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31440213

RESUMEN

Identifying the microbes present in probiotic products is an important issue in product quality control and public health. The most common methods used to identify genera containing species that produce lactic acid are matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) and 16S rRNA sequence analysis. However, the high cost of operation, difficulty in distinguishing between similar species, and limitations of the current sequencing technologies have made it difficult to obtain accurate results using these tools. To overcome these problems, a whole-genome shotgun sequencing approach has been developed along with various metagenomic classification tools. Widely used tools include the marker gene and k-mer methods, but their inevitable false-positives (FPs) hampered an accurate analysis. We therefore, designed a coverage-based pipeline to reduce the FP problem and to achieve a more reliable identification of species. The coverage-based pipeline described here not only shows higher accuracy for the detection of species and proportion analysis, based on mapping depth, but can be applied regardless of the sequencing platform. We believe that the coverage-based pipeline described in this study can provide appropriate support for probiotic quality control, addressing current labeling issues.

19.
Int J Food Microbiol ; 280: 35-40, 2018 Sep 02.
Artículo en Inglés | MEDLINE | ID: mdl-29772466

RESUMEN

Norovirus (NoV) is a major pathogenic virus that is responsible for foodborne and waterborne gastroenteritis outbreaks. Groundwater is an important source of drinking water and is used in agriculture and food manufacturing processes. This study investigated norovirus contamination of groundwater treatment systems at 1360 sites in seven metropolitan areas and nine provinces in 2015-2016. Temperature, pH, residual chlorine, and turbidity content were assessed to analyze the water quality. In 2015, six sites were positive for the presence of NoV (0.88%) and in 2016, two sites were positive (0.29%); in total, NoV was detected in 8 of the 1360 sample sites (0.59%) investigated. Identified genotypes of NoV in groundwater included GI.5, 9 and GII.4, 6, 13, 17, and 21. GII.17 was the most prevalent genotype in treated groundwater used in the food industry. This dominance of GII.17 was corroborated by NoV infection outbreak cases and the results of a survey of coastal waters in South Korea in 2014-2015. Although a low detection rate was observed in this study, NoV is a pathogen that can spread extensively. Therefore, it is necessary to periodically monitor levels of norovirus which is responsible for food poisoning in groundwater. This is a first report to reveal epidemic genotype shift of norovirus in groundwater treatment system of food facilities in South Korea. Our results may contribute to the enhancement of public health and sanitary conditions by providing molecular epidemiological information on groundwater NoV.


Asunto(s)
Infecciones por Caliciviridae/virología , Agua Potable/virología , Gastroenteritis/virología , Agua Subterránea/virología , Norovirus/aislamiento & purificación , Calidad del Agua , Cloro , Brotes de Enfermedades , Manipulación de Alimentos , Industria de Alimentos , Enfermedades Transmitidas por los Alimentos/virología , Genotipo , Humanos , Epidemiología Molecular , Norovirus/genética , Prevalencia , ARN Viral/genética , República de Corea/epidemiología
20.
Poult Sci ; 97(8): 2909-2916, 2018 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-29757448

RESUMEN

The objective of this study was to assess the quantitative prevalence, antibiotic resistance, and molecular subtyping pattern of Campylobacter isolates from chicken and duck products from poultry slaughterhouses in South Korea. A total of 240 chicken (n = 120) and duck (n = 120) carcass samples collected from 12 poultry slaughterhouses between June 2014 and February 2015 in 12 South Korean cities was tested, and 131 samples were positive for Campylobacter. Duck samples showed a higher prevalence (P < 0.05; 93 out of 120) compared to chicken samples (38 out of 120), whereas Campylobacter cell populations from positives were lower (P < 0.05) in ducks (mean count: 183.8 CFU/mL) than in chicken samples (mean count: 499.7 CFU/mL). Most isolates were resistant to nalidixic acid (93.9%), ciprofloxacin (95.4%), tetracycline (72.5%), or enrofloxacin (88.5%), but only a few strains were resistant to chloramphenicol (0.8%) or erythromycin (3.1%). Most of the tested strains were classified into diverse pulsotypes according to repetitive element sequence-based-PCR banding patterns, indicating the diversity of Campylobacter isolates present in chicken and duck samples from poultry slaughterhouses. The emergence of Campylobacter contamination and antibiotic-resistant strains in food animals poses a potential risk to public health and should be regularly monitored for developing proper control measures.


Asunto(s)
Antibacterianos/farmacología , Campylobacter/aislamiento & purificación , Farmacorresistencia Bacteriana Múltiple , Microbiología de Alimentos , Carne/microbiología , Mataderos , Animales , Campylobacter/clasificación , Pollos , Patos , Pruebas de Sensibilidad Microbiana , República de Corea
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