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1.
J Anat ; 244(6): 929-942, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38308591

RESUMEN

Premaxillary protrusion and the performance advantages it confers are implicated in the success of diverse lineages of teleost fishes, such as Cypriniformes and Acanthomorpha. Although premaxillary protrusion has evolved independently at least five times within bony fishes, much of the functional work investigating this kinesis relates to mechanisms found only in these two clades. Few studies have characterized feeding mechanisms in less-diverse premaxilla-protruding lineages and fewer yet have investigated the distinctive anatomy underlying jaw kinesis in these lineages. Here, we integrated dissection, clearing and staining, histology, micro-CT, and high-speed videography to investigate an isolated and independent origin of jaw protrusion in the hingemouth, Phractolaemus ansorgii, which employs a complex arrangement of bones, musculature, and connective tissues to feed on benthic detritus via a deployable proboscis. Our goals were to provide an integrative account of the underlying architecture of P. ansorgii's feeding apparatus and to assess the functional consequences of this drastic deviation from the more typical teleost condition. Phractolaemus ansorgii's cranial anatomy is distinct from all other fishes in that its adducted lower jaw is caudally oriented, and it possesses a mouth at the terminal end of an elongated, tube-like proboscis that is unique in its lack of skeletal support from the oral jaws. Instead, its mouth is supported primarily by hyaline-cell cartilage and other rigid connective tissues, and features highly flexible lips that are covered in rows of keratinous unculi. Concomitant changes to the adductor musculature likely allow for the flexibility to protrude the mouth dorsally and ventrally as observed during different feeding behaviors, while the intrinsic compliance of the lips allows for more effective scraping of irregular surfaces. From our feeding videos, we find that P. ansorgii is capable of modulating the distance of protrusion, with maximum anterior protrusion exceeding 30% of head length. This represents a previously undescribed example of extreme jaw protrusion on par with many acanthomorph species. Protrusion is much slower in P. ansorgii-reaching an average speed of 2.74 cm/s-compared to acanthomorphs feeding on elusive prey or even benthivorous cypriniforms. However, this reorganization of cranial anatomy may reflect a greater need for dexterity to forage more precisely in multiple directions and on a wide variety of surface textures. Although this highly modified mechanism may have limited versatility over evolutionary timescales, it has persisted in solitude within Gonorynchiformes, representing a novel functional solution for benthic feeding in tropical West African rivers.


Asunto(s)
Conducta Alimentaria , Maxilares , Animales , Maxilares/anatomía & histología , Maxilares/fisiología , Fenómenos Biomecánicos , Conducta Alimentaria/fisiología , Peces/anatomía & histología , Peces/fisiología , Microtomografía por Rayos X
2.
J Fish Biol ; 104(4): 969-978, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38118436

RESUMEN

With 76 currently valid species, the bushynose catfish genus Ancistrus is the fourth most species-rich catfish genus, yet Ancistrus diversity remains underestimated, with many species still undescribed. This is especially true of the Peruvian Andean headwaters of the Amazon, which are rich in unnamed Ancistrus species but have received little recent taxonomic attention. We describe a distinctively striped new Ancistrus species from tributaries of the Palcazú River, in the Pachitea-Ucayali-Amazonas drainage basin. The new species differs from all congeners by having black, vermiculated lines covering the head and two to four distinct black, parallel, lateral body stripes from head to caudal fin (vs. body uniformly colored or with dark or light spots or blotches over head and body, or black vermiculate lines on flanks). The new species is the fifth valid species of Ancistrus described from the rich Ucayali River ichthyofauna. It has previously been recognized in the aquarium fish trade as L267.


Asunto(s)
Bagres , Animales , Perú , Ríos , Brasil
3.
J Fish Biol ; 100(1): 161-174, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34698382

RESUMEN

This study resolves a significant impediment to the taxonomy of the Neotropical endemic hematophagous candirus by providing the first high-resolution, CT-based osteological descriptions of type and nontype specimens of Paracanthopoma parva, type species of the genus. We also describe the distinctive new species Paravandellia alleynei based on specimens that were previously misidentified as Parac. parva in the only taxonomic study of that species since its 1935 description. Paracanthopoma parva is distinguished from all nominal congeners by its parietosupraoccipital and caudal skeleton morphology and by various meristics, including numbers of teeth on median premaxilla, vertebrae, and procurrent and principal caudal-fin rays. Paravandellia alleynei differs from both nominal congeners (Paravandellia oxyptera and Paravandellia phaneronema) by the unique morphology of its maxilla, mesethmoid and opercular apparatus, relative position of the pelvic- and anal-fin origins, orientation of the opercular odontodes, and various meristics, including numbers of vertebrae, median premaxillary teeth, medial teeth on premaxilla, branchiostegal rays, opercular and interopercular odontodes, distal claw-like premaxillary teeth, dorsal-fin rays and dentary teeth. This is the first species of Paravandellia recognized from Guyana and the Essequibo River basin. It is currently known only from two type specimens from the lower Essequibo River basin and 43 nontype specimens from the upper Branco River basin. By providing the first skeletal observations for type specimens of the type species Parac. parva and for topotypic specimens of all three nominal species of Paravandellia, we clarify and confirm the diagnosis of Parac. parva and establish a robust foundation for ongoing taxonomic revisions of these two small-sized and species-poor, yet trans-continentally distributed genera, both of which contain considerable unrecognized diversity.


Asunto(s)
Bagres , Diente , Animales , Osteología , Ríos , Columna Vertebral
4.
Mol Phylogenet Evol ; 162: 107186, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-33932613

RESUMEN

The catfish family Heptapteridae is ubiquitous across a range of freshwater habitats from southern Mexico to northern Argentina and contains 23 genera and 228 valid species. After a century of mostly morphology-based systematic analyses of these fishes, we provide the first molecular phylogenetic hypothesis spanning most valid Heptapteridae genera (16 of 23). We examined eight of 14 valid genera in the Nemuroglanis-subclade (Heptapterini), all valid genera in the Brachyglanis-subclade (Brachyglaniini) and most valid Brachyglaniini species (11 of 15). Maximum likelihood and Bayesian analyses of a 4156-base alignment of five gene regions (three mitochondrial: COI, Cyt b, and ND2; two nuclear: RAG2, Glyt) yielded thoroughly resolved and statistically robust phylogenies that were largely congruent with each other and with previous morphology-based hypotheses. We propose a revised phylogenetic classification consisting of two subfamilies (Rhamdiinae, Heptapterinae) each with two tribes. Dense taxonomic sampling of Brachyglaniini, including type species of Brachyglanis, Gladioglanis, Leptorhamdia, and Myoglanis, revealed widespread paraphyly. Newly recovered clades within Brachyglaniini are closely associated with either the upper Orinoco or the Essequibo suggesting repeated dispersals and/or range expansions/contractions across the western Guiana Shield highlands and from there to the upper Amazon and Brazilian Shield. These biogeographical processes appear to have been an important driver of allopatric diversification in the clade.


Asunto(s)
Bagres/clasificación , Bagres/genética , Filogenia , Animales , Teorema de Bayes , Núcleo Celular/genética , Agua Dulce
5.
J Fish Biol ; 99(5): 1741-1745, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34218433

RESUMEN

Morphological examination of Potamoglanis specimens from three localities in the Essequibo River basin, Guyana, and one location in the Branco River basin, Brazil, confirmed their identification as Potamoglanis wapixana - a species originally described from only the Branco River basin. Morphological similarity of these miniature catfishes on opposite sides of the Rupununi savannah watershed divide and new records from lentic habitat suggest that either their modern populations predate the Pliocene division of the Branco and Essequibo rivers or the species is capable of living in and/or migrating across the Rupununi Portal - a seasonally flooded hydrological connection known to facilitate the movement of mostly much larger fishes between the Branco and Essequibo basins.


Asunto(s)
Bagres , Animales , Brasil , Ecosistema , Guyana , Ríos
6.
Mol Ecol ; 29(7): 1235-1249, 2020 04.
Artículo en Inglés | MEDLINE | ID: mdl-32202354

RESUMEN

Since the early Holocene, fish population genetics in the Laurentian Great Lakes have been shaped by the dual influences of habitat structure and post-glacial dispersal. Riverscape genetics theory predicts that longitudinal habitat corridors and unidirectional downstream water-flow drive the downstream accumulation of genetic diversity, whereas post-glacial dispersal theory predicts that fish genetic diversity should decrease with increasing distance from glacial refugia. This study examines populations of seven native fish species codistributed above and below the 58 m high Niagara Falls - a hypothesized barrier to gene flow in aquatic species. A better understanding of Niagara Falls' role as a barrier to gene flow and dispersal is needed to identify drivers of Great Lakes genetic diversity and guide strategies to limit exotic species invasions. We used genome-wide SNPs and coalescent models to test whether populations are: (a) genetically distinct, consistent with the Niagara Falls barrier hypothesis; (b) more genetically diverse upstream, consistent with post-glacial expansion theory, or downstream, consistent with the riverscape habitat theory; and (c) have migrated either upstream or downstream past Niagara Falls. We found that genetic diversity is consistently greater below Niagara Falls and the falls are an effective barrier to migration, but two species have probably dispersed upstream past the falls after glacial retreat yet before opening of the Welland Canal. Models restricting migration to after opening of the Welland Canal were generally rejected. These results help explain how river habitat features affect aquatic species' genetic diversity and highlight the need to better understand post-glacial dispersal pathways.


Asunto(s)
Peces/genética , Flujo Génico , Genética de Población , Polimorfismo de Nucleótido Simple , Ríos , Distribución Animal , Animales , Ecosistema , Peces/clasificación , Modelos Genéticos
7.
Proc Natl Acad Sci U S A ; 114(28): 7385-7390, 2017 07 11.
Artículo en Inglés | MEDLINE | ID: mdl-28642345

RESUMEN

High-altitude environments present a range of biochemical and physiological challenges for organisms through decreases in oxygen, pressure, and temperature relative to lowland habitats. Protein-level adaptations to hypoxic high-altitude conditions have been identified in multiple terrestrial endotherms; however, comparable adaptations in aquatic ectotherms, such as fishes, have not been as extensively characterized. In enzyme proteins, cold adaptation is attained through functional trade-offs between stability and activity, often mediated by substitutions outside the active site. Little is known whether signaling proteins [e.g., G protein-coupled receptors (GPCRs)] exhibit natural variation in response to cold temperatures. Rhodopsin (RH1), the temperature-sensitive visual pigment mediating dim-light vision, offers an opportunity to enhance our understanding of thermal adaptation in a model GPCR. Here, we investigate the evolution of rhodopsin function in an Andean mountain catfish system spanning a range of elevations. Using molecular evolutionary analyses and site-directed mutagenesis experiments, we provide evidence for cold adaptation in RH1. We find that unique amino acid substitutions occur at sites under positive selection in high-altitude catfishes, located at opposite ends of the RH1 intramolecular hydrogen-bonding network. Natural high-altitude variants introduced into these sites via mutagenesis have limited effects on spectral tuning, yet decrease the stability of dark-state and light-activated rhodopsin, accelerating the decay of ligand-bound forms. As found in cold-adapted enzymes, this phenotype likely compensates for a cold-induced decrease in kinetic rates-properties of rhodopsin that mediate rod sensitivity and visual performance. Our results support a role for natural variation in enhancing the performance of GPCRs in response to cold temperatures.


Asunto(s)
Altitud , Rodopsina/química , Animales , Teorema de Bayes , Evolución Biológica , Bolivia , Bagres , Proteínas y Péptidos de Choque por Frío/química , Frío , Cristalografía por Rayos X , Ecuador , Evolución Molecular , Geografía , Células HEK293 , Humanos , Cinética , Mutación , Perú , Filogenia
8.
J Fish Biol ; 97(5): 1481-1490, 2020 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-32920863

RESUMEN

A new species of the sand-dwelling catfish genus Ammoglanis is described from a marginal habitat of the lower Atabapo River, a left-bank blackwater tributary of the upper Orinoco River in Amazonas, Venezuela, adjacent to the border with Colombia. Ammoglanis natgeorum is distinguished from all congeners by trunk pigmentation pattern consisting of scattered ventral chromatophores concentrated around the anal-fin base and numerous additional meristic and anatomical characteristics. A. natgeorum is the second species of Ammoglanis described from the Orinoco River basin after Ammoglanis pulex, and several shared character states (e.g., eight total dorsal-fin rays, overall coloration pattern and presence of two finger-like papillae posterior to chin) suggest that it is more closely related to Ammoglanis obliquus (from the central Amazon basin) and A. pulex than to other congeners.


Asunto(s)
Bagres/anatomía & histología , Bagres/clasificación , Aletas de Animales/anatomía & histología , Animales , Cromatóforos , Pigmentación/fisiología , Ríos , Especificidad de la Especie , Venezuela
9.
Mol Phylogenet Evol ; 135: 148-165, 2019 06.
Artículo en Inglés | MEDLINE | ID: mdl-30802595

RESUMEN

Neotropical freshwaters host more than 6000 fish species, of which 983 are suckermouth armored catfishes of the family Loricariidae - the most-diverse catfish family and fifth most species-rich vertebrate family on Earth. Given their diversity and ubiquitous distribution across many habitat types, loricariids are an excellent system in which to investigate factors that create and maintain Neotropical fish diversity, yet robust phylogenies needed to support such ecological and evolutionary studies are lacking. We sought to buttress the systematic understanding of loricariid catfishes by generating a genome-scale data set (1041 loci, 328,330 bp) for 140 species spanning 75 genera and five of six previously proposed subfamilies. Both maximum likelihood and Bayesian analyses strongly supported the monophyly of Loricariidae. Our results also reinforced the established backbone of loricariid interrelationships: Delturinae as sister to all other analyzed loricariids, with subfamily Rhinelepinae diverging next, followed by Loricariinae sister to Hypostominae + Hypoptopomatinae. Previous DNA-based relationships within Hypostominae and Loricariinae were strongly supported. However, we evaluated for the first time DNA-based relationships among many Hypoptopomatinae genera and found significant differences with this subfamily's current genus-level classification, prompting several taxonomic changes. Finally, we placed our topological results within a fossil-calibrated temporal context indicating that early Loricariidae diversification occurred across the Cretaceous-Paleogene boundary ∼65 million years ago (Ma). Our study lays a strong foundation for future research to focus on relationships among species and the macroevolutionary processes affecting loricariid diversification rates and patterns.


Asunto(s)
Bagres/clasificación , Bagres/genética , Secuencia Conservada , Filogenia , Animales , Secuencia de Bases , Teorema de Bayes , Calibración , Secuencia Conservada/genética , Ecosistema , Funciones de Verosimilitud , Análisis de Secuencia de ADN , Especificidad de la Especie , Factores de Tiempo
10.
Mol Phylogenet Evol ; 127: 1020-1033, 2018 10.
Artículo en Inglés | MEDLINE | ID: mdl-30016651

RESUMEN

Dreissenidae is one of the most economically and ecologically important families of freshwater and estuarine mollusks. Fourteen extant species and three genera are currently recognized: Congeria contains three species from karst caves along the eastern Adriatic coast and one from the Orinoco River of Venezuela, Dreissena contains six species native to Eastern European rivers and estuaries, and Mytilopsis contains three species from the Gulf of Mexico, Caribbean, and northwestern coast of South America and one from the Tocantins River of Brazil. Previous molecular phylogenetic studies have examined all species except those from South American rivers, and found each genus to be monophyletic with Congeria and Mytilopsis forming a clade sister to Dreissena. We present the first multilocus phylogeny of Dreissenidae inclusive of South American riverine species. Bayesian and maximum likelihood analyses of a 3085 bp alignment consisting of mitochondrial (COI and 16S) and nuclear (18S and 28S) gene regions found Neotropical species to be consistently and strongly supported as sister to all other dreissenids, although incomplete sequencing of the single Orinoco specimen obscured Neotropical monophyly. Our intergeneric relationships are inconsistent with an extensive fossil record suggesting that dreissenids originated in Europe approximately 30 My before dispersing to the Western Hemisphere. Fossil-calibrated analyses indicated that Neotropical dreissenids diverged from European lineages in the mid to late Eocene (∼39.3 Ma), and Brazilian and Guiana shield populations diversified during the Oligocene to Miocene. We erect the new genus Rheodreissena for all Neotropical freshwater dreissenids and present haplotype data indicative of at least three species. Widespread anthropogenic alteration of the middle Xingu River and lower Amazon threatens the persistence of these endemic, poorly studied mussels and may facilitate introduction beyond their native range.


Asunto(s)
Dreissena/clasificación , Sitios Genéticos , Filogenia , Clima Tropical , Animales , Teorema de Bayes , ADN Mitocondrial/genética , Dreissena/anatomía & histología , Complejo IV de Transporte de Electrones/genética , Fósiles , Variación Genética , Geografía
11.
Mol Phylogenet Evol ; 109: 321-336, 2017 04.
Artículo en Inglés | MEDLINE | ID: mdl-28065866

RESUMEN

Approximately two-dozen species in three genera of the Neotropical suckermouth armored catfish family Loricariidae are the only described fishes known to specialize on diets consisting largely of wood. We conducted a molecular phylogenetic analysis of 10 described species and 14 undescribed species or morphotypes assigned to the wood-eating catfish genus Panaqolus, and four described species and three undescribed species or morphotypes assigned to the distantly related wood-eating catfish genus Panaque. Our analyses included individuals and species from both genera that are broadly distributed throughout tropical South America east of the Andes Mountains and 13 additional genera hypothesized to have also descended from the most recent common ancestor of Panaqolus and Panaque. Bayesian and maximum likelihood analyses of two mitochondrial and three nuclear loci totaling 4293bp confirmed respective monophyly of Panaqolus, exclusive of the putative congener 'Panaqolus' koko, and Panaque. Members of Panaqolus sensu stricto were distributed across three strongly monophyletic clades: a clade of 10 generally darkly colored, lyretail species distributed across western headwaters of the Amazon Basin, a clade of three irregularly and narrowly banded species from the western Orinoco Basin, and a clade of 11 generally brown, broadly banded species that are widely distributed throughout the Amazon Basin. We erect new subgenera for each of these clades and a new genus for the morphologically, biogeographically and ecologically distinct species 'Panaqolus' koko. Our finding that perhaps half of the species-level diversity in the widespread genus Panaqolus remains undescribed illustrates the extent to which total taxonomic diversity of small and philopatric, yet apparently widely distributed, Amazonian fishes may remain underestimated. Ranges for two Panaqolus subgenera and the genus Panaque overlap with the wood-eating genus Cochliodon in central Andean tributaries of the upper Amazon Basin, which appear to be a global epicenter of wood-eating catfish diversity.


Asunto(s)
Bagres/clasificación , Variación Genética , Animales , Teorema de Bayes , Bagres/genética , Tipificación Molecular , Filogenia , Análisis de Secuencia de ADN , América del Sur , Madera
12.
Mol Ecol ; 25(7): 1511-29, 2016 04.
Artículo en Inglés | MEDLINE | ID: mdl-26863936

RESUMEN

Ecological opportunity is often proposed as a driver of accelerated diversification, but evidence has been largely derived from either contemporary island radiations or the fossil record. Here, we investigate the potential influence of ecological opportunity on a transcontinental radiation of South American freshwater fishes. We generate a species-dense, time-calibrated molecular phylogeny for the suckermouth armored catfish subfamily Hypostominae, with a focus on the species-rich and geographically widespread genus Hypostomus. We use the resulting chronogram to estimate ancestral geographical ranges, infer historical rates of cladogenesis and diversification in habitat and body size and shape, and test the hypothesis that invasions of previously unoccupied river drainages accelerated evolution and contributed to adaptive radiation. Both the subfamily Hypostominae and the included genus Hypostomus originated in the Amazon/Orinoco ecoregion. Hypostomus subsequently dispersed throughout tropical South America east of the Andes Mountains. Consequent to invasion of the peripheral, low-diversity Paraná River basin in southeastern Brazil approximately 12.5 Mya, Paraná lineages of Hypostomus, experienced increased rates of cladogenesis and ecological and morphological diversification. Contemporary lineages of Paraná Hypostomus are less species rich but more phenotypically diverse than their congeners elsewhere. Accelerated speciation and morphological diversification rates within Paraná basin Hypostomus are consistent with adaptive radiation. The geographical remoteness of the Paraná River basin, its recent history of marine incursion, and its continuing exclusion of many species that are widespread in other tropical South American rivers suggest that ecological opportunity played an important role in facilitating the observed accelerations in diversification.


Asunto(s)
Adaptación Biológica/genética , Bagres/clasificación , Especiación Genética , Filogenia , Distribución Animal , Animales , Teorema de Bayes , Tamaño Corporal , Bagres/anatomía & histología , Bagres/genética , Ecosistema , Geografía , Funciones de Verosimilitud , Análisis de Secuencia de ADN , América del Sur
13.
Mol Phylogenet Evol ; 82 Pt A: 269-88, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25193609

RESUMEN

The Neotropical catfish family Loricariidae is the fifth most species-rich vertebrate family on Earth, with over 800 valid species. The Hypostominae is its most species-rich, geographically widespread, and ecomorphologically diverse subfamily. Here, we provide a comprehensive molecular phylogenetic reappraisal of genus-level relationships in the Hypostominae based on our sequencing and analysis of two mitochondrial and three nuclear loci (4293bp total). Our most striking large-scale systematic discovery was that the tribe Hypostomini, which has traditionally been recognized as sister to tribe Ancistrini based on morphological data, was nested within Ancistrini. This required recognition of seven additional tribe-level clades: the Chaetostoma Clade, the Pseudancistrus Clade, the Lithoxus Clade, the 'Pseudancistrus' Clade, the Acanthicus Clade, the Hemiancistrus Clade, and the Peckoltia Clade. Results of our analysis, which included type- and non-type species for every valid genus in Hypostominae, support the reevaluation and restriction of several historically problematic genera, including Baryancistrus, Cordylancistrus, Hemiancistrus, and Peckoltia. Much of the deep lineage diversity in Hypostominae is restricted to Guiana Shield and northern Andean drainages, with three tribe-level clades still largely restricted to the Guiana Shield. Of the six geographically widespread clades, a paraphyletic assemblage of three contain lineages restricted to drainages west of the Andes Mountains, suggesting that early diversification of the Hypostominae predated the late Miocene surge in Andean uplift. Our results also highlight examples of trophic ecological diversification and convergence in the Loricariidae, including support for three independent origins of highly similar and globally unique morphological specializations for eating wood.


Asunto(s)
Evolución Biológica , Bagres/clasificación , Filogenia , Animales , Teorema de Bayes , Bagres/genética , Núcleo Celular/genética , ADN Mitocondrial/genética , Dieta , Femenino , Funciones de Verosimilitud , Modelos Genéticos , Análisis de Secuencia de ADN
14.
J Fish Biol ; 95(2): 347, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-31407371
15.
J Fish Biol ; 94(2): 209, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30785228
16.
Zootaxa ; 3691: 192-8, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-26167575

RESUMEN

Panaqolus albivermis is described as a new species based on four specimens from the San Alejandro River, a tributary of the upper Ucayali River in central Peru. Panaqolus albivermis is diagnosed from all other Panaqolus except P. maccus by having head, body, and fins with widely separated small white to yellow spots, vermiculations, and/or thin oblique bands on a black base (vs. exclusively small white to yellow spots on a black base in P. alboinaculatus, generally broad oblique bands of alternating light to dark brown in P. changae, P. gnomus, P purusiensis, and a uniformly dark gray to black body color in P. dentex, P. koko, and P. nocturnus); P. albivernis can be diagnosed from P. maccus by having a black base color (vs. brown), by having parallel dentary tooth cups (vs. acute intermandibular tooth cup angle), and by having a larger known adult body size (95.8 mm SL vs. 84.8).


Asunto(s)
Bagres/clasificación , Distribución Animal , Estructuras Animales/anatomía & histología , Estructuras Animales/crecimiento & desarrollo , Animales , Tamaño Corporal , Bagres/anatomía & histología , Bagres/crecimiento & desarrollo , Ecosistema , Femenino , Masculino , Tamaño de los Órganos , Perú , Ríos
17.
Mol Ecol Resour ; 23(6): 1319-1333, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-37101312

RESUMEN

Detection of invasive species is critical for management but is often limited by challenges associated with capture, processing and identification of early life stages. DNA metabarcoding facilitates large-scale monitoring projects to detect establishment early. Here, we test the use of DNA metabarcoding to monitor invasive species by sequencing over 5000 fishes in bulk ichthyoplankton samples (larvae and eggs) from four rivers of ecological and cultural importance in southern Canada. We were successful in detecting species known from each river and three invasive species in two of the four rivers. This includes the first detection of early life-stage rudd in the Credit River. We evaluated whether sampling gear affected the detection of invasive species and estimates of species richness, and found that light traps outperform bongo nets in both cases. We also found that the primers used for the amplification of target sequences and the number of sequencing reads generated per sample affect the consistency of species detections. However, these factors have less impact on detections and species richness estimates than the number of samples collected and analysed. Our analyses also show that incomplete reference databases can result in incorrectly attributing DNA sequences to invasive species. Overall, we conclude that DNA metabarcoding is an efficient tool for monitoring the early establishment of invasive species by detecting evidence of reproduction but requires careful consideration of sampling design and the primers used to amplify, sequence and classify the diversity of native and potentially invasive species.


Asunto(s)
Biodiversidad , Especies Introducidas , Animales , Código de Barras del ADN Taxonómico , Peces/genética , Larva/genética , ADN , Cartilla de ADN
18.
BMC Evol Biol ; 12: 124, 2012 Jul 26.
Artículo en Inglés | MEDLINE | ID: mdl-22835218

RESUMEN

BACKGROUND: The Neotropical catfish family Loricariidae contains over 830 species that display extraordinary variation in jaw morphologies but nonetheless reveal little interspecific variation from a generalized diet of detritus and algae. To investigate this paradox, we collected δ13C and δ15N stable isotope signatures from 649 specimens representing 32 loricariid genera and 82 species from 19 local assemblages distributed across South America. We calculated vectors representing the distance and direction of each specimen relative to the δ15N/δ13C centroid for its local assemblage, and then examined the evolutionary diversification of loricariids across assemblage isotope niche space by regressing the mean vector for each genus in each assemblage onto a phylogeny reconstructed from osteological characters. RESULTS: Loricariids displayed a total range of δ15N assemblage centroid deviation spanning 4.9‰, which is within the tissue-diet discrimination range known for Loricariidae, indicating that they feed at a similar trophic level and that δ15N largely reflects differences in their dietary protein content. Total range of δ13C deviation spanned 7.4‰, which is less than the minimum range reported for neotropical river fish communities, suggesting that loricariids selectively assimilate a restricted subset of the full basal resource spectrum available to fishes. Phylogenetic regression of assemblage centroid-standardized vectors for δ15N and δ13C revealed that loricariid genera with allopatric distributions in disjunct river basins partition basal resources in an evolutionarily conserved manner concordant with patterns of jaw morphological specialization and with evolutionary diversification via ecological radiation. CONCLUSIONS: Trophic partitioning along elemental/nutritional gradients may provide an important mechanism of dietary segregation and evolutionary diversification among loricariids and perhaps other taxonomic groups of apparently generalist detritivores and herbivores. Evolutionary patterns among the Loricariidae show a high degree of trophic niche conservatism, indicating that evolutionary lineage affiliation can be a strong predictor of how basal consumers segregate trophic niche space.


Asunto(s)
Evolución Biológica , Bagres/clasificación , Animales , Isótopos de Carbono/análisis , Bagres/anatomía & histología , Cadena Alimentaria , Isótopos de Nitrógeno/análisis , Filogenia , América del Sur
19.
Zootaxa ; 4732(3): zootaxa.4732.3.3, 2020 Feb 13.
Artículo en Inglés | MEDLINE | ID: mdl-32230248

RESUMEN

The suckermouth armored catfish genus Panaque contains seven valid species, including the Royal Pleco, Panaque nigrolineatus, which has long been popular as an ornamental aquarium fish and was originally described from the Apure River basin in Venezuela. We examine a phenotypically distinct population of P. nigrolineatus from the Guaviare River in southern Colombia at the southwesternmost corner of the Orinoco River basin. In contrast to typically boldly striped populations from closer to the type locality of P. nigrolineatus, the Guaviare River basin population is usually boldly spotted, earning them the common name Watermelon Pleco in the aquarium fish trade. Because of the commercial popularity of this distinctive color morph, it is heavily exploited for export to the global ornamental fish trade. We find that the Guaviare River P. nigrolineatus laurafabianae is not only distinct geographically and in color pattern, but is also morphometrically diagnosable from P. nigrolineatus individuals from outside the Guaviare River basin. However, relatively subtle phenotypic differences, invariance in nuclear DNA markers, < 0.5% divergence in mitochondrial DNA markers 16S, cytb, and ND2, and the non-monophyly of Guaviare River populations prevent us from robustly inferring species-level distinctiveness of the Watermelon Pleco. We therefore propose to recognize this population as a distinct subspecies.


Asunto(s)
Bagres , Ríos , Animales , Colombia , Filogenia , Madera
20.
Ecol Evol ; 10(14): 7117-7128, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32760516

RESUMEN

Neotropical wood-eating catfishes (family Loricariidae) can occur in diverse assemblages with multiple genera and species feeding on the same woody detritus. As such, they present an intriguing system in which to examine the influence of host species identity on the vertebrate gut microbiome as well as to determine the potential role of gut bacteria in wood digestion. We characterized the gut microbiome of two co-occurring catfish genera and four species: Panaqolus albomaculatus, Panaqolus gnomus, Panaqolus nocturnus, and Panaque bathyphilus, as well as that of submerged wood on which they feed. The gut bacterial community did not significantly vary across three gut regions (proximal, mid, distal) for any catfish species, although interspecific variation in the gut microbiome was significant, with magnitude of interspecific difference generally reflecting host phylogenetic proximity. Further, the gut microbiome of each species was significantly different to that present on the submerged wood. Inferring the genomic potential of the gut microbiome revealed that the majority of wood digesting pathways were at best equivalent to and more often depleted or nonexistent within the catfish gut compared to the submerged wood, suggesting a minimal role for the gut microbiome in wood digestion. Rather, these fishes are more likely reliant on fiber degradation performed by microbes in the environment, with their gut microbiome determined more by host identity and phylogenetic history.

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