Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus.

Wheat, one of the most important food crops, is threatened by a blast disease pandemic. Here, we show that a clonal lineage of the wheat blast fungus recently spread to Asia and Africa following two independent introductions from South America. Through a combination of genome analyses and laboratory experiments, we show that the decade-old blast pandemic lineage can be controlled by the Rmg8 disease resistance gene and is sensitive to strobilurin fungicides. However, we also highlight the potential of the pandemic clone to evolve fungicide-insensitive variants and sexually recombine with African lineages. This underscores the urgent need for genomic surveillance to track and mitigate the spread of wheat blast outside of South America and to guide preemptive wheat breeding for blast resistance.

Correction: Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus.

[This corrects the article DOI: 10.1371/journal.pbio.3002052.].

Cautionary Notes on Use of the MoT3 Diagnostic Assay for Magnaporthe oryzae Wheat and Rice Blast Isolates.

The blast fungus Magnaporthe oryzae is comprised of lineages that exhibit varying degrees of specificity on about 50 grass hosts, including rice, wheat, and barley. Reliable diagnostic tools are essential given that the pathogen has a propensity to jump to new hosts and spread to new geographic regions. Of particular concern is wheat blast, which has suddenly appeared in Bangladesh in 2016 before spreading to neighboring India. In these Asian countries, wheat blast strains are now co-occurring with the destructive rice blast pathogen raising the possibility of genetic exchange between these destructive pathogens. We assessed the recently described MoT3 diagnostic assay and found that it did not distinguish between wheat and rice blast isolates from Bangladesh. The assay is based on primers matching the WB12 sequence corresponding to a fragment of the M. oryzae MGG_02337 gene annotated as a short chain dehydrogenase. These primers could not reliably distinguish between wheat and rice blast isolates from Bangladesh based on DNA amplification experiments performed in separate laboratories in Bangladesh and in the United Kingdom. Specifically, all eight rice blast isolates tested in this study produced the WB12 amplicon. In addition, comparative genomics of the WB12 nucleotide sequence revealed a complex underlying genetic structure with related sequences across M. oryzae strains and in both rice and wheat blast isolates. We, therefore, caution against the indiscriminate use of this assay to identify wheat blast and encourage further development of the assay to ensure its value in diagnosis.

Modulation of Nutritional and Biochemical Properties of Wheat Grains Infected by Blast Fungus Magnaporthe oryzae Triticum Pathotype.

Wheat blast disease caused by the Magnaporthe oryzae Triticum (MoT) pathotype exerts a significant impact on grain development, yield, and quality of the wheat. The aim of this study was to investigate morphological, physiological, biochemical, and nutritional properties of wheat cv. BARI Gom 24 under varying levels of blast disease severity in wheat spikes. Grain morphology, volume, weight, and germination of the infected grains were significantly affected by MoT. Biochemical traits specifically grain N, Ca, Mg, and Fe content significantly increased (up to threefold; p > 0.05), but organic carbon, Cu, Zn, B, and S content in wheat grains significantly decreased with increased severity of MoT infection. The grain crude protein content was about twofold higher (up to 18.5% in grain) in severely blast-infected grains compared to the uninfected wheat (9.7%). Analysis of other nutritional properties such as secondary metabolites revealed that total antioxidant activity, flavonoid, and carotenoid concentrations remarkably decreased (up to threefold) with increasing severity of blast infestation in wheat grain. Grain moisture, lipid, and ash content were slightly increased with the increase in blast severity. However, grain K and total phenolic concentration were increased at a certain level of blast infestation and then reduced with increase in MoT infestation.