Data-driven classification of individual cells by their non-Markovian motion.

We present a method to differentiate organisms solely by their motion based on the generalized Langevin equation (GLE) and use it to distinguish two different swimming modes of strongly confined unicellular microalgae Chlamydomonas reinhardtii. The GLE is a general model for active or passive motion of organisms and particles that can be derived from a time-dependent general many-body Hamiltonian and in particular includes non-Markovian effects (i.e., the trajectory memory of its past). We extract all GLE parameters from individual cell trajectories and perform an unbiased cluster analysis to group them into different classes. For the specific cell population employed in the experiments, the GLE-based assignment into the two different swimming modes works perfectly, as checked by control experiments. The classification and sorting of single cells and organisms is important in different areas; our method, which is based on motion trajectories, offers wide-ranging applications in biology and medicine.

Volatile organic compound sensing in breath using conducting polymer coated chemi-resistive filter paper sensors.

In this work, a disposable sensor array was designed based on the chemi-resistive behavior of the conducting polymers to detect three volatile organic compounds (VOCs), i.e., acetone, ethanol, and methanol in air and breath. Four disposable resistive sensors were designed by coating polypyrrole and polyaniline (in their doped and de-doped forms) on filter paper substrates and tested against VOCs in air. Change in conductivity of the polymer resulting from exposure to various VOC concentration was measured as percentage resistance change using a standard multimeter. The lowest concentration detected for acetone, ethanol, and methanol vapors was 400 ppb, 150 ppb, and 300 ppb, respectively within 2 min. These VOC-responsive sensors, housed in an indigenous inert chamber, showed good stability, repeatability, and reversibility while sensing, thus making it suitable for environmental pollutant detection at room temperature. Furthermore, the non-specific nature of these easy to fabricate sensors towards all VOCs is considered favorable and upon classifying with principal component analysis (PCA), the gases were qualitatively distinguished in separate clusters. These developed sensors were also tested and analyzed using VOC spiked real breath samples as proof of concept.

Palladium(0)-Catalyzed Heteroannulations of Allenamides: General Synthesis of δ-Carbolines and Benzofuro[3,2-b]pyridines.

Palladium(0)-catalyzed reactions between allenamides 3 or 4 and aryl iodides/bromides 5/6 provide an easy access to δ-carbolines 1 or benzofuro[3,2-b]pyridines 2. The reaction constitutes a fast intermolecular assembly that takes place in one pot, and the choice of the phosphine ligand is critical for success. A plausible reaction mechanism is proposed. The reaction is amenable to the synthesis of bis-heteroannulated products.

Palladium(0)-catalysed regioselective cyclisations of 2-amino(tosyl) benzamides/sulphonamides: the stereoselective synthesis of 3-ylidene-[1,4]benzodiazepin-5-ones/benzo[f][1,2,5]thiadiazepine-1,1-dioxides.

The Pd(0) catalysed cyclisation reactions between tert-butyl propargyl carbonates and 2-aminotosyl benzamides or sulphonamides deliver 1,4-benzodiazepin-5-ones or sultam derivatives, key components of many biologically active compounds. But 2-amino benzamides/sulphonamides require propargyl carbonates substituted at acetylenic carbon to undergo the reaction resulting in the stereoselective formation of the said products.

Strong confinement of active microalgae leads to inversion of vortex flow and enhanced mixing.

Microorganisms swimming through viscous fluids imprint their propulsion mechanisms in the flow fields they generate. Extreme confinement of these swimmers between rigid boundaries often arises in natural and technological contexts, yet measurements of their mechanics in this regime are absent. Here, we show that strongly confining the microalga Chlamydomonas between two parallel plates not only inhibits its motility through contact friction with the walls but also leads, for purely mechanical reasons, to inversion of the surrounding vortex flows. Insights from the experiment lead to a simplified theoretical description of flow fields based on a quasi-2D Brinkman approximation to the Stokes equation rather than the usual method of images. We argue that this vortex flow inversion provides the advantage of enhanced fluid mixing despite higher friction. Overall, our results offer a comprehensive framework for analyzing the collective flows of strongly confined swimmers.

Internal friction controls active ciliary oscillations near the instability threshold.

Ciliary oscillations driven by molecular motors cause fluid motion at micron scale. Stable oscillations require a substantial source of dissipation to balance the energy input of motors. Conventionally, it stems from external fluid. We show, in contrast, that external fluid friction is negligible compared to internal elastic stress through a simultaneous measurement of motion and flow field of an isolated and active Chlamydomonas cilium beating near the instability threshold. Consequently, internal friction emerges as the sole source of dissipation for ciliary oscillations. We combine these experimental insights with theoretical modeling of active filaments to show that an instability to oscillations takes place when active stresses are strain softening and shear thinning. Together, our results reveal a counterintuitive mechanism of ciliary beating and provide a general experimental and theoretical methodology to analyze other active filaments, both biological and synthetic ones.