Gamma amino butyric acid (GABA) application modulated the morpho-physiological and yield traits of fragrant rice under well-watered and drought conditions.

BACKGROUND: Changing climate is causing erratic rainfall and prolonged drought periods, thus posing serious threats to crop productivity. Owing to severity of drought events, it is imperative to take proactive measures to enhance the resilience of drought sensitive crops like rice. Therefore, the present study was carried out to improve the drought stress tolerance in rice through gamma amino butyric acid (GABA) application. METHODS: The experiment was included four GABA concentrations i.e., 0 mM as control, 1 mM, 1.5 mM, and 2 mM, two water levels i.e., 100% and 50% field capacity (referred as FC100 for well-watered and FC50 for drought conditions, respectively), and two fragrant rice cultivars i.e., Super Basmati and Basmati-515. RESULTS: The findings unveiled a comprehensive improvement in various parameters with GABA application in fragrant rice under both well-watered (FC100) and water-limited (FC50) conditions, compared to the control. Specifically, GABA induced enhancements were observed in plant height, root length, fresh weight, dry weight, total soluble protein content, and total free amino acid content across both cultivars. Moreover, GABA application significantly improved peroxidase (POD) and catalase (CAT) enzyme activities, alongside elevating anthocyanin levels, while concurrently reducing H2O2 contents in both FC100 and FC50 treatments. Furthermore, the positive impact of GABA extended to morphological traits, with notable increases in panicle length, total tillers and productive tillers per hill, branch and grain numbers per panicle, and 1000-grain weight for Super Basmati and Basmati 515 cultivars under both water regimes, compared to Ck. Similarly, the grain yield increased by 31.01% and 27.32% under FC100 and 36.85% and 27.71% under FC50 in Super Basmati and Basmati-515, respectively, in response to GABA application, compared to Ck. Additionally, principal component analysis (PCA) revealed significant variances attributed to Dim1 and Dim2, with 86.1% and 4.0% of the variance, respectively, across three bi-plots encompassing rice cultivars, water levels, and GABA treatments. Notably, all tested indices, except for H2O2 and non-productive tillers per hill, exhibited positive correlations amongst themselves and with rice yield, further emphasizing the beneficial effects of GABA application on fragrant rice under well-watered and drought conditions. CONCLUSIONS: GABA significantly improved fragrant rice performance under both well-watered (FC100) and water-limited (FC50) conditions. Moreover, integrating GABA application into rice cultivation practices could not only improve the crop resilience to drought stress but also potentially benefiting the future food and nutritional security globally. However, however; further research is needed to understand the cellular and molecular mechanisms of the functionality of GABA in fragrant rice, particularly under drought conditions.

Whole-genome resequencing deciphers patterns of genetic diversity, phylogeny, and evolutionary dynamics in Kashmir cattle.

Kashmir cattle, which were kept by local pastoralists for centuries, are exceptionally resilient and adaptive to harsh environments. Despite its significance, the genomic characteristics of this cattle breed remain elusive. This study utilized whole genome sequences of Kashmir cattle (n = 20; newly sequenced) alongside published whole genomes of 32 distinct breeds and seven core cattle populations (n = 135). The analysis identified ~25.87 million biallelic single nucleotide polymorphisms in Kashmir cattle, predominantly in intergenic and intron regions. Population structure analyses revealed distinct clustering patterns of Kashmir cattle with proximity to the South Asian, African and Chinese indicine cattle populations. Genetic diversity analysis of Kashmir cattle demonstrated lower inbreeding and greater nucleotide diversity than analyzed global breeds. Homozygosity runs indicated less consanguineous mating in Kashmir cattle compared with European taurine breeds. Furthermore, six selection sweep detection methods were used within Kashmir cattle and other cattle populations to identify genes associated with vital traits, including immunity (BOLA-DQA5, BOLA-DQB, TNFAIP8L, FCRL4, AOAH, HIF1AN, FBXL3, MPEG1, CDC40, etc.), reproduction (GOLGA4, BRWD1, OSBP2, LEO1 ADCY5, etc.), growth (ADPRHL1, NRG2, TCF12, TMOD4, GBP4, IGF2, RSPO3, SCD, etc.), milk composition (MRPS30 and CSF1) and high-altitude adaptation (EDNRA, ITPR2, AGBL4 and SCG3). These findings provide essential genetic insights into the characteristics and establish the foundation for the scientific conservation and utilization of Kashmir cattle breed.

Genome-wide identification of G-protein coupled receptors (GPCRs) and their expression profile in response to ß-cypermethrin stress in Zeugodacus cucurbitae.

G-protein coupled receptors (GPCRs) are the largest and most diverse transmembrane receptor family in the cell. They are involved in regulating a wide range of biological processes, including behavior, reproduction, and development. However, GPCRs have not yet been identified in Zeugodacus cucurbitae. The current study focuses on the GPCRs identification, classification, distribution, and their expression analysis under ß-cypermethrin stress to uncover novel targets for pest management and assist in the development of effective strategies for controlling the melon fly population. We identified 80 GPCRs genes including 50 GPCRs identified in family A, 17 GPCRs identified in family B, 8 identified in family C, and 5 identified in family F. Z. cucurbitae GPCRs showed significant differences in both the number of genes in families or subfamilies, as well as the sequencing of the genes. Interestingly, newly identified GPCRs genes are expressed differently at various developmental stages of Z. cucurbitae. Further, we evaluated these 80 GPCRs using Realtime quantitative PCR to confirm their expression between ß-cypermethrin-resistant (RS) strain and susceptible strain (SS) of Z. cucurbitae. We identified 50 GPCR genes were highly overexpressed in a RS. Among these genes, eight genes were strongly induced by the 30% lethal concentration (LC) while two genes were significantly increased by the 50% LC of ß-cypermethrin. This first genome-wide profiling and characterization of GPCRs could lay foundation for unraveling detoxification mechanism and target site modifications which may improve the insect resistance and could be effective insecticide targets for Z. cucurbitae management.

Impact of coconut-fiber biochar on lead translocation, accumulation, and detoxification mechanisms in a soil-rice system under elevated lead stress.

Biochar, an environmentally friendly material, was found to passivate lead (Pb) in contaminated soil effectively. This study utilized spectroscopic investigations and partial least squares path modeling (PLS-PM) analysis to examine the impact of coconut-fiber biochar (CFB) on the translocation, accumulation, and detoxification mechanisms of Pb in soil-rice systems. The results demonstrated a significant decrease (p < 0.05) in bioavailable Pb concentration in paddy soils with CFB amendment, as well as reduced Pb concentrations in rice roots, shoots, and brown rice. Synchrotron-based micro X-ray fluorescence analyses revealed that CFB application inhibited the migration of Pb to the rhizospheric soil region, leading to reduced Pb uptake by rice roots. Additionally, the CFB treatment decreased Pb concentrations in the cellular protoplasm of both roots and shoots, and enhanced the activity of antioxidant enzymes in rice plants, improving their Pb stress tolerance. PLS-PM analyses quantified the effects of CFB on the accumulation and detoxification pathways of Pb in the soil-rice system. Understanding how biochar influences the immobilization and detoxification of Pb in soil-rice systems could provide valuable insights for strategically using biochar to address hazardous elements in complex agricultural settings.

Cadmium induced defense enhance the invasive potential of Wedelia trilobata under herbivore infestation.

Cadmium (Cd) pollution is on the rise due to rapid urbanization, which emphasize the potential adverse effects on plant biodiversity and human health. Wedelia as a dominant invasive species, is tested for its tolerance to Cd-toxicity and herbivore infestation. We investigate defense mechanism system of invasive Wedelia trilobata and its native congener Wedelia chinensis against the Cd-pollution and Spodoptera litura infestation. We found that Cd-toxicity significantly increase hydrogen peroxide (H2O2), Malondialdehyde (MDA) and hydroxyl ions (O2•) in W. chinensis 20.61%, 4.78% and 15.68% in leave and 27.44%, 25.52% and 30.88% in root, respectively. The photosynthetic pigments (Chla, Chla and Caro) and chlorophyll florescence (Fo and Fv/Fm) declined by (60.23%, 58.48% and 51.96%), and (73.29% and 55.75%) respectively in W. chinensis and (44.76%, 44.24% and 44.30%), and (54.66% and 45.36%) in W. trilobata under Cd treatment and S. litura. Invasive W. trilobata had higher enzymatic antioxidant SOD 126.9/71.64%, POD 97.24/94.92%, CAT 53.99/25.62% and APX 82.79/50.19%, and nonenzymatic antioxidant ASA 10.47/16.87%, DHA 15.07/27.88%, GSH 15.91/10.03% and GSSG 13.56/17.93% activity in leaf/root, respectively. Overall, W. trilobata accumulate higher Cd content 55.41%, 50.61% and 13.95% in root, shoot and leaf tissues respectively, than its native congener W. chinensis. While, nutrient profile of W. chinensis reveals less uptake of Fe, Cu and Zn than W. trilobata. W. trilobata showed efficient alleviation of oxidative damage through upregulating the genes related to key defense such as SOD, POD, CAT, APX, GR, PROL, FLV, ABA and JAZ, and metal transporter in leaves, shoot and root tissues, respectively. Conclusively, W. trilobata efficiently employed Cd-triggered defense for successful invasion, even under S. litura infestation, in Cd-contaminated soil.

Microplastics and cadmium affect invasion success by altering complementarity and selection effects in native community.

The diversity-invasibility hypothesis predicts that native plant communities with high biodiversity should be more resistant to invasion than low biodiversity communities. However, observational studies have found that there is often a positive relationship between native community diversity and invasibility. Pollutants were not tested for their potential to cause this positive relationship. Here, we established native communities with three levels of diversity (1, 2 and 4 species) and introduced an invasive plant [Symphyotrichum subulatum (Michx.) G. L. Nesom] to test the effects of different pollutant treatments (i.e., unpolluted control, microplastics (MPs) alone, cadmium (Cd) alone, and their combination) on the relationship between native community diversity and community invasibility. Our results indicate that different MPs and Cd treatments altered the invasibility of native communities, but this effect may depend on the type of pollutant. MPs single treatment reduced invasion success, and the degree of reduction increased with increasing native community diversity (Diversity 2: - 14.1 %; Diversity 4: - 63.1 %). Cd single treatment increased the aboveground biomass of invasive plants (+ 40.2 %) and invasion success. The presence of MPs inhibited the contribution of Cd to invasion success. Furthermore, we found that the complementarity and selection effects of the native community were negatively correlated with invasion success, and their relative contributions to invasion success also depended on the pollutant type. We found new evidence of how pollutants affect the relationship between native community diversity and habitat invasibility, which provides new perspectives for understanding and managing biological invasions in the context of environmental pollution. This may contribute to promoting the conservation of biodiversity, especially in ecologically sensitive and polluted areas.

Corrigendum: A metagenomic analysis of mosquito virome collected from different animal farms at Yunnan-Myanmar border of China.

[This corrects the article DOI: 10.3389/fmicb.2020.591478.].

Nitrogen Deposition Amplifies the Legacy Effects of Plant Invasion.

The legacy effects of invasive plant species can hinder the recovery of native communities, especially under nitrogen deposition conditions, where invasive species show growth advantages and trigger secondary invasions in controlled areas. Therefore, it is crucial to thoroughly investigate the effects of nitrogen deposition on the legacy effects of plant invasions and their mechanisms. The hypotheses of this study are as follows: (1) Nitrogen deposition amplifies the legacy effects of plant invasion. This phenomenon was investigated by analysing four potential mechanisms covering community system structure, nitrogen metabolism, geochemical cycles, and microbial mechanisms. The results suggest that microorganisms drive plant-soil feedback processes, even regulating or limiting other factors. (2) The impact of nitrogen deposition on the legacy effects of plant invasions may be intensified primarily through enhanced nitrogen metabolism via microbial anaerobes bacteria. Essential insights into invasion ecology and ecological management have been provided by analysing how nitrogen-fixing bacteria improve nitrogen metabolism and establish sustainable methods for controlling invasive plant species. This in-depth study contributes to our better understanding of the lasting effects of plant invasions on ecosystems and provides valuable guidance for future ecological management.