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1.
Mycologia ; 108(4): 806-19, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27055573

RESUMEN

Fusisporium solani was described as the causal agent of a dry rot of potato in Germany in the mid 19th century. As Fusarium solani, the species became known as a plurivorous plant pathogen, endophyte, decomposer, and opportunistic pathogen of humans and nutritional symbiont of insects. In parallel, it became evident that the morphologically defined species F. solani represents a phylogenetically and biologically complex group of often morphologically cryptic species that has come to be known in part as the F. solani species complex (FSSC), accommodating several formae speciales and mating populations/biological species. The FSSC currently includes more than 60 phylogenetic species. Several of these have been named, but the majority remains unnamed and the identity of F. solani sensu stricto is unclear. To promote further taxonomic developments in the FSSC, lectoand epitypification is proposed for Fusisporium solani Although no type material for F. solani is known to exist, the species was abundantly illustrated in the protologue. Thus, a relevant illustration provided by von Martius is selected as the lectotype. The epitype selected here originates from a rotting potato collected in a field in Slovenia. This strain causes a dry rot of artificially inoculated potatoes. It groups in the heretofore unnamed phylogenetic species 5, which is nested within clade 3 of the FSSC (FSSC 5). Members of this phylogenetic species have a wide geographic distribution and include soil saprotrophs and plant and opportunistic human pathogens. This typification is consistent with the original description of Fusisporium solani and the concept of F. solani as a widely distributed soil inhabitant and pathogen.


Asunto(s)
Fusarium/clasificación , Filogenia , Análisis por Conglomerados , ADN de Hongos/química , ADN de Hongos/genética , ADN Ribosómico/química , ADN Ribosómico/genética , ADN Espaciador Ribosómico/química , ADN Espaciador Ribosómico/genética , Fusarium/citología , Fusarium/genética , Microscopía , Datos de Secuencia Molecular , Factor 1 de Elongación Peptídica/genética , Enfermedades de las Plantas/microbiología , ARN Polimerasa II/genética , ARN Ribosómico 28S/genética , ARN Ribosómico 5.8S/genética , Análisis de Secuencia de ADN , Eslovenia , Solanum tuberosum/microbiología
2.
Mycologia ; 107(3): 558-590, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25661720

RESUMEN

Trichoderma harzianum is known as a cosmopolitan, ubiquitous species associated with a wide variety of substrates. It is possibly the most commonly used name in agricultural applications involving Trichoderma, including biological control of plant diseases. While various studies have suggested that T. harzianum is a species complex, only a few cryptic species are named. In the present study the taxonomy of the T. harzianum species complex is revised to include at least 14 species. Previously named species included in the complex are T. guizhouense, T. harzianum, and T. inhamatum. Two new combinations are proposed, T. lentiforme and T. lixii. Nine species are described as new, T. afarasin, T. afroharzianum, T. atrobrunneum, T. camerunense, T. endophyticum, T. neotropicale, T. pyramidale, T. rifaii and T. simmonsii. We isolated Trichoderma cultures from four commercial biocontrol products reported to contain T. harzianum. None of the biocontrol strains were identified as T. harzianum s. str. In addition, the widely applied culture 'T. harzianum T22' was determined to be T. afroharzianum. Some species in the T. harzianum complex appear to be exclusively endophytic, while others were only isolated from soil. Sexual states are rare. Descriptions and illustrations are provided. A secondary barcode, nuc translation elongation factor 1-α (TEF1) is needed to identify species in this complex.


Asunto(s)
Inoculantes Agrícolas/clasificación , Trichoderma/clasificación , Inoculantes Agrícolas/genética , Inoculantes Agrícolas/crecimiento & desarrollo , Inoculantes Agrícolas/aislamiento & purificación , ADN de Hongos/genética , ADN Ribosómico/genética , Proteínas Fúngicas/genética , Datos de Secuencia Molecular , Factor 1 de Elongación Peptídica/genética , Control Biológico de Vectores/economía , Filogenia , Microbiología del Suelo , Esporas Fúngicas/clasificación , Esporas Fúngicas/genética , Esporas Fúngicas/crecimiento & desarrollo , Esporas Fúngicas/aislamiento & purificación , Trichoderma/genética , Trichoderma/crecimiento & desarrollo , Trichoderma/aislamiento & purificación
3.
Mycologia ; 107(3): 532-57, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25800252

RESUMEN

The genus Cosmospora includes nectrioid fungi that grow on polypores and xylariaceous fungi. The collections growing on xylariaceous fungi have been identified recently as Cosmospora viliuscula. In this paper the phylogeny and taxonomy of C. viliuscula are investigated. A phylogeny was generated with maximum likelihood and Bayesian inference methods applied to a three-partition dataset (ITS, 28S, MCM7-RPB1-TUB2). Based on these results, we demonstrate that Cosmospora viliuscula represents a diverse species complex comprising more than 10 species. Seven new species are described, including three single-strain lineages, and the sexual states of C. arxii and C. khandalensis are described for the first time. The sexual states of these fungi tend to have a high degree of morphological homoplasy, making it difficult to differentiate among them based on morphological characters alone. However, the apparent host specificity of species in this complex aide in the diagnosis of these fungi. In addition, the RPB1 marker provides sufficient resolution to distinguish these fungi.


Asunto(s)
Hypocreales/clasificación , ADN de Hongos/genética , Hypocreales/genética , Hypocreales/crecimiento & desarrollo , Datos de Secuencia Molecular , Filogenia , Esporas Fúngicas/clasificación , Esporas Fúngicas/genética , Esporas Fúngicas/crecimiento & desarrollo
4.
Chem Biodivers ; 12(4): 662-84, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25879509

RESUMEN

The production of bioactive polypeptides (peptaibiotics) in vivo is a sophisticated adaptation strategy of both mycoparasitic and saprotrophic Trichoderma species for colonizing and defending their natural habitats. This feature is of major practical importance, as the detection of peptaibiotics in plant-protective Trichoderma species, which are successfully used against economically relevant bacterial and fungal plant pathogens, certainly contributes to a better understanding of these complex antagonistic interactions. We analyzed five commercial biocontrol agents (BCAs), namely Canna(®) , Trichosan(®) , Vitalin(®) , Promot(®) WP, and TrichoMax(®) , formulated with recently described species of the Trichoderma harzianum complex, viz. T. afroharzianum, T. simmonsii, and T. guizhouense. By using the well-established, HPLC/MS-based peptaibiomics approach, it could unequivocally be demonstrated that all of these formulations contained new and recurrent peptaibols, i.e., peptaibiotics carrying an acetylated N-terminus, the C-terminus of which is reduced to a 1,2-amino alcohol. Their chain lengths, including the amino alcohol, were 11, 14, and 18 residues, respectively. Peptaibols were also to be the dominating secondary metabolites in plate cultures of the four strains obtained from four of the Trichoderma- based BCAs, contributing 95% of the UHPLC-UV/VIS peak areas and 99% of the total ion count MS peak area from solid media. Furthermore, species-specific hydrophobins, as well as non-peptaibiotic secondary metabolites, were detected, the latter being known for their antifungal, siderophore, or plant-growth-promoting activities. Notably, none of the isolates produced low-molecular weight mycotoxins.


Asunto(s)
Agentes de Control Biológico/análisis , Peptaiboles/análisis , Metabolismo Secundario , Trichoderma , Aminoácidos/análisis , Cromatografía Líquida de Alta Presión , Peso Molecular , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Espectrofotometría Ultravioleta , Trichoderma/metabolismo
5.
Mycologia ; 105(5): 1287-305, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23921243

RESUMEN

Cosmospora sensu Rossman accommodated nectroid fungi with small, reddish, smooth, thin-walled perithecia but recently was found to be polyphyletic and has been segregated into multiple genera. Not all cosmospora-like fungi have been treated systematically. Some of these species include C. vilior and many specimens often labeled "Cosmospora sp." The objectives of this research were to establish the identity of C. vilior through epitypication using a recent collection that agrees with the type specimen in morphology, host and geography and to determine its phylogenetic position within Cosmospora sensu lato and the Nectriaceae. A multilocus phylogeny was constructed based on six loci (ITS, LSU, MCM7, rpb1, tef1, tub) to estimate a phylogeny. Results from the phylogenetic analyses indicated that C. vilior forms a monophyletic group with other cosmospora-like fungi that have an acremonium-like anamorph and that parasitize Eutypa and Eutypella (Ascomycota, Sordariomycetes, Xylariales, Diatrypaceae). The group is phylogenetically distinct from other previously segregated genera. A new genus, Pseudocosmospora, is described to accommodate the type species, P. eutypellae, and nine additional species in this clade.


Asunto(s)
Hypocreales/clasificación , Filogenia , Esporas Fúngicas/citología , Secuencia de Bases , ADN de Hongos/genética , ADN Ribosómico/genética , Genes Fúngicos/genética , Hypocreales/citología , Hypocreales/genética , Datos de Secuencia Molecular , Tipificación de Secuencias Multilocus , Técnicas de Tipificación Micológica , Análisis de Secuencia de ADN
6.
Pest Manag Sci ; 79(2): 719-728, 2023 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-36256490

RESUMEN

BACKGROUND: The meadow spittlebug Philaenus spumarius L. is the vector for the bacterium Xylella fastidiosa subspecies pauca, involved in olive quick decline syndrome (OQDS) in Salento (Italy). Control of P. spumarius is key to limiting transmission of the bacterium, and an innovative approach can be based on effective natural compounds and biocontrol agents. Entomopathogenic fungi are an important source of bioactive natural molecules that play a role in the relationship between microorganisms and insects. RESULTS: Pathogenicity bioassays, performed by dipping adults of P. spumarius in either fungal culture suspension (120 mg mL-1 ) or cell-free culture supernatant of Trichoderma chlorosporum GJS 91-150, showed, respectively, 97% and 87% death within 24 h. The effect was dose-dependent. In laboratory bioassays, the powdered fungal culture of T. chlorosporum GJS 91-150 did not exhibit pathogenic activity when injected into nymph spittle. CONCLUSIONS: T. chlorosporum GJS 91-150 affected the survival of P. spumarius adults. The lethal effect was not associated with the development of mycelium on the cuticle, but seems due, at least partly, to fungal metabolites released in the culture medium. The fungus tested here has good potential for the development of effective low-environmental impact control strategies for P. spumarius and suppression of X. fastidiosa. © 2022 Society of Chemical Industry.


Asunto(s)
Hemípteros , Trichoderma , Xylella , Animales , Cuarentena , Enfermedades de las Plantas/prevención & control , Enfermedades de las Plantas/microbiología , Hemípteros/microbiología , Insectos Vectores/microbiología
7.
Fungal Genet Biol ; 49(5): 358-68, 2012 May.
Artículo en Inglés | MEDLINE | ID: mdl-22405896

RESUMEN

The phylogenetically most derived group of the genus Trichoderma - section Longibrachiatum, includes some of the most intensively studied species, such as the industrial cellulase producer T. reesei (teleomorph Hypocrea jecorina), or the facultative opportunistic human pathogens T. longibrachiatum and H. orientalis. At the same time, the phylogeny of this clade is only poorly understood. Here we used a collection of 112 strains representing all currently recognized species and isolates that were tentatively identified as members of the group, to analyze species diversity and molecular evolution. Bayesian phylogenetic analyses based on several unlinked loci in individual and concatenated datasets confirmed 13 previously described species and 3 previously recognized phylogenetic species all of which were not yet described formally. When the genealogical concordance criterion, the K/θ method and comparison of frequencies of pairwise nucleotide differences were applied to the data sample, 10 additional new phylogenetic species were recognized, seven of which consisted only of a single lineage. Our analysis thus identifies 26 putative species in section Longibrachiatum, what doubles the currently estimated taxonomic diversity of the group, and illustrates the power of combining genealogical concordance and population genetic analysis for dissecting species in a recently diverged group of fungal species.


Asunto(s)
Filogenia , Trichoderma/clasificación , Trichoderma/genética , ADN de Hongos/química , ADN de Hongos/genética , Evolución Molecular , Variación Genética , Datos de Secuencia Molecular , Análisis de Secuencia de ADN
8.
Mycologia ; 104(6): 1325-50, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22778168

RESUMEN

Thelonectria is a recently established genus of common and ubiquitous fungi on woody hosts, previously placed in the genus Neonectria. Thelonectria coronata and T. veuillotiana occur sympatrically in tropical, subtropical and temperate regions. Previous taxonomic studies including T. coronata and T. veuillotiana suggested these fungi could represent species complexes; however, the morphological features used to define species exhibited few differences useful for testing this hypothesis. To assess the status of T. coronata and T. veuillotiana, phylogenetic analyses of six genomic regions were combined with a morphological examination of specimens. A multi-gene phylogeny reconstructed with maximum parsimony, maximum likelihood and Bayesian approaches identified five phylogenetic groups in T. coronata and six in T. veuillotiana. As is common for cryptic species, unequivocal diagnostic morphological characters could not be identified; however, average values of morphological traits correspond to the phylogenetic groups. An increased number of non-synonymous/synonymous substitutions in the ß-tubu-lin gene and a decreased or absent production of conidia were detected within the T. coronata complex, possibly indicating the homothallic nature of these isolates. T. coronata and T. veuillotiana and related species are described and illustrated here; a dichotomous key to all species is provided.


Asunto(s)
Ascomicetos/clasificación , Filogenia , Actinas/genética , Ascomicetos/citología , Ascomicetos/genética , Ascomicetos/aislamiento & purificación , Secuencia de Bases , ADN de Hongos/química , ADN de Hongos/genética , ADN Ribosómico/química , ADN Ribosómico/genética , ADN Espaciador Ribosómico/química , ADN Espaciador Ribosómico/genética , Proteínas Fúngicas/genética , Datos de Secuencia Molecular , Tipificación de Secuencias Multilocus , Técnicas de Tipificación Micológica , Extensión de la Cadena Peptídica de Translación/genética , ARN Polimerasa II/genética , Análisis de Secuencia de ADN , Esporas Fúngicas/clasificación , Esporas Fúngicas/citología , Esporas Fúngicas/genética , Esporas Fúngicas/aislamiento & purificación , Tubulina (Proteína)/genética
9.
Fungal Divers ; 55(1): 77-108, 2012 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-22956918

RESUMEN

The Longibrachiatum Clade of Trichoderma is revised. Eight new species are described (T. aethiopicum, T. capillare, T. flagellatum, T. gillesii, T. gracile, T. pinnatum, T. saturnisporopsis, T. solani). The twenty-one species known to belong to the Longibrachiatum Clade are included in a synoptic key. Trichoderma parareesei and T. effusum are redescribed based on new collections or additional observations. Hypocrea teleomorphs are reported for T. gillesii and T. pinnatum. Previously described species are annotated.

10.
Mycologia ; 103(3): 616-30, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21262986

RESUMEN

Hypocrea peltata (Pezizomycotina, Hypocreales, Hypocreaceae) is a common, widespread essentially subtropical species, with an uncharacteristically large stroma and asci containing four large and four small bicellular ascospores. Its only anamorph consists of indehiscent aleuriospores; it does not form a Trichoderma anamorph, which is typical of most Trichoderma/Hypocrea species. Hypocrea peltata grows very well at 37 C. The large stromata and failure to form a Trichoderma anamorph could lead one to doubt its generic placement. However sequences of the internal transcribed spacer region (ITS), 28S nuclear large subunit (LSU) of rDNA and RNA polymerase subunit II (rpb2) regions indicate that it represents a unique lineage within Trichoderma/Hypocrea. ITS and rbp2 sequences derived from cultures of H. peltata are identical to the "unidentified Hypocreaceae" reported in the literature as being isolated from lung of a patient with non-fatal pulmonary fibrosis.


Asunto(s)
Hypocrea/clasificación , Hypocrea/genética , Fibrosis Pulmonar/microbiología , Secuencia de Bases , ADN de Hongos/genética , ADN Intergénico/genética , ADN Ribosómico/genética , Humanos , Hypocrea/fisiología , Pulmón/microbiología , Filogenia , Reacción en Cadena de la Polimerasa , ARN Polimerasa II/genética , Análisis de Secuencia de ADN , Esporas Fúngicas/citología
11.
Mycologia ; 103(1): 139-51, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-20943534

RESUMEN

A new species of Trichoderma (teleomorph Hypocrea, Ascomycota, Sordariomycetes, Hypocreales, Hypocreaceae), T. amazonicum, endophytic on the living sapwood and leaves of Hevea spp. trees is described. Trichoderma amazonicum is distinguished from closely related species in the Harzianum clade (e.g. Hypocrea alni, H. brunneoviridis, H. epimyces, H. parepimyces, T. aggressivum, T. harzianum, T. pleuroticola and T. pleuroti) by morphological and ecological characteristics and phylogenetic analysis of three loci (ITS nrDNA, tef1 and rpb2). The closest relatives of this species are the facultatively fungicolous species T. pleuroticola and T. pleuroti.


Asunto(s)
Hevea/microbiología , Trichoderma/clasificación , Secuencia de Bases , ADN de Hongos/química , ADN de Hongos/genética , ADN Espaciador Ribosómico/química , ADN Espaciador Ribosómico/genética , Microscopía Electrónica , Datos de Secuencia Molecular , Factor 1 de Elongación Peptídica/química , Factor 1 de Elongación Peptídica/genética , Perú , Hojas de la Planta/microbiología , Reacción en Cadena de la Polimerasa , ARN Polimerasa II/química , ARN Polimerasa II/genética , ARN Ribosómico 5.8S/química , ARN Ribosómico 5.8S/genética , Alineación de Secuencia , Trichoderma/genética , Trichoderma/aislamiento & purificación , Trichoderma/ultraestructura
12.
Mycologia ; 103(6): 1302-30, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21700636

RESUMEN

A large collection of strains belonging to the Fusarium solani species complex (FSSC) was isolated from soil and perithecia in primary forests in Sri Lanka (from fallen tree bark) and tropical Australia (Queensland, from fallen tree fruits and nuts). Portions of the translation elongation factor 1-alpha (tef1) gene, the nuclear large subunit (NLSU) and internal transcribed spacer regions (ITS) of the nuclear ribosomal RNA genes were sequenced in 52 isolates from soil and perithecia. The FSSC was divided previously into three clades with some biogeographic structure, termed Clades 1, 2 and 3. All Sri Lankan and Australian soil isolates were found to be members of Clade 3, most grouping with the cosmopolitan soil-associated species F. falciforme. All but two Sri Lankan perithecial isolates were associated with a set of five divergent phylogenetic lineages that were associated with Clade 2. Australian perithecial isolates resided in a subclade of Clade 3 where most of the previously defined mating populations of the FSSC reside. Isolates from perithecia and those cultured from soil were always members of different species lineages, even when derived from proximal locations. The previous biogeographic assignment of Clade 2 to South America is now expanded to the worldwide tropics. Sri Lanka appears to be an important center of diversity for the FSSC. Nectria haematococca is epitypified with a collection from the type locality in Sri Lanka; its anamorph is described as a new species, Fusarium haematococcum. Neocosmospora E.F. Smith is adopted as the correct genus for Nectria haematococca. These new species are described: F. kurunegalense/Neo. kurunegalensis, F. rectiphorus/Neo. rectiphora/, F. mahasenii/Neo. mahasenii/, F. kelerajum/Neo. keleraja.


Asunto(s)
Fusarium/clasificación , Microbiología del Suelo , Árboles/microbiología , Fusarium/aislamiento & purificación , Fusarium/ultraestructura , Filogenia
13.
Mycologia ; 102(4): 944-66, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20648760

RESUMEN

Analysis of a worldwide collection of strains of Trichoderma asperellum sensu lato using multilocus genealogies of four genomic regions (tef1, rpb2, act, ITS1, 2 and 5.8s rRNA), sequence polymorphism-derived (SPD) markers, matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) of the proteome and classical mycological techniques revealed two morphologically cryptic sister species within T. asperellum, T. asperellum, T. asperelloides sp. nov. and a third closely related but morphologically distinct species. T. yunnanense. Trichoderma asperellum and T. asperelloides have wide sympatric distribution on multiple continents; T. yunnanense is represented by a single strain from China. Several strains reported in the literature or represented in GenBank as T. asperellum are re-identified as T. asperelloides. Four molecular SPD typing patterns (I-IV) were found over a large geographic range. Patterns I-III were produced only by T. asperellum and pattern IV by T. asperelloides and T. yunnanense. Pattern I was found in North America, South America, Africa and Europe and Asia (Saudi Arabia). Pattern III was found in Africa, North America, South America and Asia, not in Europe. Pattern II was found only in Cameroon (central Africa) and Peru. Pattern IV was found in all continents. All SPD II pattern strains formed a strongly supported subclade within the T. asperellum clade in the phylogenetic tree based on rpb2 and MLS (combined multilocus sequence). The diversity of DNA sequences, SPD markers and polypeptides in T. asperellum suggests that further speciation is under way within T. asperellum. MALDI-TOF MS distinguished T. yunnanense from related taxa by UPGMA clustering, but separation between T. asperellum and T. asperelloides was less clear.


Asunto(s)
Trichoderma/clasificación , Técnicas de Tipificación Micológica , Filogenia , Proteoma , Análisis de Secuencia de ADN , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Trichoderma/citología , Trichoderma/genética
14.
Mycologia ; 102(6): 1318-38, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20943565

RESUMEN

Colletotrichum interacts with numerous plant species overtly as symptomatic pathogens and cryptically as asymptomatic endophytes. It is not known whether these contrasting ecological modes are optional strategies expressed by individual Colletotrichum species or whether a species' ecology is explicitly pathogenic or endophytic. We explored this question by inferring relationships among 77 C. gloeosporioides s.l. strains isolated from asymptomatic leaves and from anthracnose lesions on leaves and fruits of Theobroma cacao (cacao) and other plants from Panamá. ITS and 5'-tef1 were used to assess diversity and to delineate operational taxonomic units for multilocus phylogenetic analysis. The ITS and 5'-tef1 screens concordantly resolved four strongly supported lineages, clades A-D: Clade A includes the ex type of C. gloeosporioides, clade B includes the ex type ITS sequence of C. boninense, and clades C and D are unidentified. The ITS yielded limited resolution and support within all clades, in particular the C. gloeosporioides clade (A), the focal lineage dealt with in this study. In contrast the 5'-tef1 screen differentiated nine distinctive haplotype subgroups within the C. gloeosporioides clade that were concordant with phylogenetic terminals resolved in a five-locus nuclear phylogeny. Among these were two phylogenetic species associated with symptomatic infections specific to either cacao or mango and five phylogenetic species isolated principally as asymptomatic infections from cacao and other plant hosts. We formally describe two new species, C. tropicale and C. ignotum, that are frequent asymptomatic associates of cacao and other Neotropical plant species, and epitypify C. theobromicola, which is associated with foliar and fruit anthracnose lesions of cacao. Asymptomatic Colletotrichum strains isolated from cacao plants grown in China included six distinct C. gloeosporioides clade taxa, only one of which is known to occur in the Neotropics.


Asunto(s)
Cacao/microbiología , Colletotrichum/clasificación , Colletotrichum/aislamiento & purificación , Interacciones Huésped-Patógeno , Filogenia , Simbiosis , Cacao/fisiología , Colletotrichum/genética , Colletotrichum/fisiología , Datos de Secuencia Molecular , Técnicas de Tipificación Micológica , Panamá
15.
Mycologia ; 101(1): 142-56, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19271677

RESUMEN

The new species, Trichoderma evansii and T. lieckfeldtiae, resemble the closely related T. hamatum and T. pubescens in forming discrete, setose conidial pustules within which arise smooth, green conidia from pachybasium-like conidiophores. The phylogenetic position of these species was determined with combined partial sequences of ITS, translationelongation factor 1-alpha, RNA polymerase II subunit and actin genes. All are members of the Viride clade. Trichoderma evansii forms a sister group relationship with a clade that includes T. hamatum and T. pubescens. It differs from the latter two species in having subglobose conidia; it was isolated as an endophyte from sapwood of Lophira alata (Ochnaceae) and Cola verticillata (Malvaceae) in Cameroon and Theobroma gileri (Malvaceae) in Peru. Trichoderma lieckfeldtiae occupies an unresolved position in the Viride clade despite being virtually morphologically indistinguishable from T. hamatum; it was isolated from fruit of cacao infected with Moniliophthora roreri in Colombia, pseudostroma of Moniliophthora roreri on pods of Theobroma cacao in Peru and from soil in a cacao farm in Cameroon (central Africa).


Asunto(s)
Trichoderma/clasificación , Ecosistema , Genes Fúngicos/genética , Datos de Secuencia Molecular , Filogenia , Especificidad de la Especie , Trichoderma/citología , Trichoderma/aislamiento & purificación
16.
Mycologia ; 101(6): 904-19, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19927757

RESUMEN

Amplistroma is described as a new genus for A. carolinianum, A. diminutisporum, A. guianense, A. hallingii, A. ravum, A. tartareum and A. xylarioides. Species of Amplistroma are distinguished by large stromata of textura intricata with polystichous ascomata and long necks that are either erumpent from the stromatal surface or form bumps or protuberances. The type collection of Ceratostoma sphaerospermum was examined and found to be synonymous with Wallrothiella congregata. The distribution of W. congregata is expanded by collections from Costa Rica, the eastern United States and Puerto Rico. Wallrothiella congregata has ascomata that are long-necked and develop individually or are gregarious on the substrate but do not form large stromata. Amplistroma and Wallrothiella are distinguished by small asci with eight, minute, globose ascospores. An acrodontium-like anamorph occurs in both genera. Phylogenetic analyses of 28S large-subunit rDNA sequences group these taxa in a well supported clade distinct from known orders within the Sordariomycetidae but showing unsupported relationships with the Chaetosphaeriales and the Magnaporthaceae. Family Amplistromataceae is described for this clade and placed within the Sordariomycetidae incertae sedis.


Asunto(s)
Ascomicetos/clasificación , Esporas Fúngicas/citología , Ascomicetos/citología , Ascomicetos/genética , Costa Rica , ADN de Hongos/análisis , ADN de Hongos/genética , Filogenia , Puerto Rico , ARN Ribosómico 28S/análisis , ARN Ribosómico 28S/genética , Alineación de Secuencia , Análisis de Secuencia de ADN , Especificidad de la Especie , Estados Unidos
17.
Mycologia ; 100(6): 962-84, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-19202850

RESUMEN

The genus Protocrea is redefined, based on holotype and fresh specimens of its type species P. farinosa, using morphology of teleomorph and anamorph and phylogenetic analyses of rpb2 sequences. Data based on currently available specimens suggest the existence of three well defined and three still unnamed species. Apart from the type, P. farinosa, none of the species originally included are accepted in the genus. Species of Protocrea are characterized by perithecia formed in or on a subiculum, bicellular ascospores that disarticulate at the septum while still in the ascus and by anamorphs belonging to Gliocladium sensu stricto. For Hypocrea farinosa sensu auct. the new species H. decipiens is introduced. Hypocrea pallida is recognized as a species of Protocrea. It is closely related to P. farinosa, morphologically, phylogenetically and by habit. Protocrea illinoënsis is described here as the sister taxon of P. farinosa found in the USA. All species are polyporicolous, with the principal hosts Skeletocutis nivea for P. farinosa and P. illinoënsis, and species of Oligoporus/Tyromyces for P. pallida. In addition to hosts the main differences among these species are a stronger (orange) pigmentation of perithecia and subiculum in P. pallida and a violaceous KOH reaction in P. pallida and P. illinoënsis. P. farinosa is known only from Europe with certainty and P. illinoënsis only from the USA, while P. pallida is probably cosmopolitan. Putative synonymy of some similar species is discussed.


Asunto(s)
Hypocreales/clasificación , Secuencia de Bases , ADN de Hongos/genética , ADN Ribosómico/genética , ADN Espaciador Ribosómico/genética , Proteínas Fúngicas/genética , Hypocreales/citología , Hypocreales/fisiología , Datos de Secuencia Molecular , Filogenia , ARN Polimerasa II/genética
18.
Mycologia ; 100(5): 760-75, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-18959162

RESUMEN

A new lineage is discovered within the Botryosphaeriaceae (Ascomycetes, Dothideomycetes, incertae sedis). Consistent with current practice of providing generic names for independent lineages, this lineage is described as Endomelanconiopsis gen. nov., with the anamorphic species E. endophytica sp. nov. and E. microspora comb. nov. (= Endomelanconium microsporum). Endomelanconiopsis is characterized by eustromatic conidiomata and holoblastically produced, brown, nonapiculate, unicellular conidia, each with a longitudinal germ slit. Phylogenetic analysis of partial sequences of LSU, ITS and translation elongation factor 1 alpha (tef1) indicate that E. endophytica is sister of E. microspora and that they are nested within the Botryosphaeriaceae. However because there is no support for the "backbone" of the Botryosphaeriacae we are not able to see the interrelationships among the many genera in the family. Neither species is known to have a teleomorph. Endomelanconiopsis differs from Endomelanconium because conidia of the type species of Endomelanconium, E. pini, are papillate at the base, conidiogenous cells proliferate sympodially and the pycnidial wall is thinner; we postulate that the teleomorph of E. pini as yet unknown is an inoperculate discomycete. Endomelanconiopsis endophytica was isolated as an endophyte from healthy leaves of Theobroma cacao (cacao, Malvaceae) and Heisteria concinna (Erythroplaceae) in Panama. Endomelanconiopsis microspora was isolated from soil in Europe.


Asunto(s)
Ascomicetos/clasificación , Ascomicetos/aislamiento & purificación , Ascomicetos/citología , Ascomicetos/genética , ADN de Hongos/genética , ADN Espaciador Ribosómico/genética , Proteínas Fúngicas/genética , Datos de Secuencia Molecular , Factor 1 de Elongación Peptídica/genética , Filogenia , Microbiología del Suelo , Esporas Fúngicas/citología
19.
Chem Biodivers ; 5(5): 671-80, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18493954

RESUMEN

Fungi of the genus Trichoderma with teleomorphs in Hypocrea are abundant producers of a group of amphiphilic, non-ribosomal peptide antibiotics, which are rich in the non-proteinogenic amino acid Aib (alpha-aminoisobutyric acid). They are referred to as peptaibiotics, or peptaibols, if a 1,2-amino alcohol is present at the C-terminus. Trichoderma/Hypocrea, like other ascomycetous fungi, also produce hydrophobins, a class of small, cysteine-rich proteins. Advanced soft ionization mass spectrometric techniques such as LC-CID-MS, LC-ESI-MS(n), and IC-MALDI-TOF-MS enabled the high-throughput analysis, simultaneous detection and sequence determination of peptaibiotics and hydrophobins from minute quantities of fungal materials. Some Trichoderma species have been recognized to produce peptaibiotics as well as simple mycotoxins of the trichothecene group. The combination of sequence data of both groups of peptides with the pattern of low-molecular-weight secondary metabolites, including trichothecene-type mycotoxins, independently confirmed the results of morphological, molecular, and phylogenetic analyses. This approach established a new lineage in Trichoderma/Hypocrea, the Brevicompactum clade, comprising four new and one redescribed species. Notably, commercial preparations of single or mixed cultures of Trichoderma species, in particular T. harzianum, and T. koningii, are registered as biocontrol agents for soil and plant pathogens. In this context, it is emphasized that the four mycotoxin-producing species of the recently established Brevicompactum clade (T. brevicompactum, T. arundinaceum, T. turrialbense, and T. protrudens) are not closely related to any of the Trichoderma species currently used as biocontrol agents. Furthermore, possible health concerns about release of peptaibiotics in the biosphere are discussed with respect to their bioactivities and their use as drugs in human and veterinary medicine. Finally, future prospects regarding novel bioactivities and further research needs, including interdisciplinary taxonomic approaches, are outlined.


Asunto(s)
Proteínas Fúngicas/biosíntesis , Proteínas Fúngicas/química , Hypocrea/química , Micotoxinas/biosíntesis , Micotoxinas/química , Trichoderma/química , Animales , Proteínas Fúngicas/clasificación , Humanos , Hypocrea/clasificación , Hypocrea/metabolismo , Micotoxinas/clasificación , Trichoderma/clasificación , Trichoderma/metabolismo
20.
PLoS One ; 12(10): e0186704, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29049338

RESUMEN

The roots of land plants associate with microbes, including fungal symbionts that can confer abiotic stress tolerance. Bitumen extraction following oil-sand surface mining in the Athabasca region of Alberta, Canada removes plant nutrients but leaves a petrochemical residue, making the coarse tailings (CT) hostile to both plants and microbes. We isolated an endophyte strain of the Ascomycete Trichoderma harzianum we call TSTh20-1 (hereafter, TSTh) from a dandelion that was naturally growing on CT. TSTh colonization allowed tomato, wheat, and remediation seed mixtures to germinate and their seedlings to flourish on CT without the use of fertilizer. Compared to control plants, TSTh increased germination speed, percent germination, and biomass accumulation. TSTh also improved plant water use efficiency and drought recovery. TSTh-colonized plants secreted twice the level of peroxidase into CT as did plants alone. Over two months, plants colonized with TSTh doubled the petrochemical mobilization from CT over plants alone, suggesting a peroxide-mediated mechanism for petrochemical degradation. TSTh grew on autoclaved CT, bitumen, and other petrochemicals as sole carbon sources. Further, TSTh is a micro-aerobe that could metabolize 13C-phenanthrene to 13CO2 in 0.5% oxygen. TSTh has excellent potential for contributing to revegetating and remediating petrochemical contamination.


Asunto(s)
Hongos/fisiología , Desarrollo de la Planta , Suelo , Simbiosis
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