In vitro study on influence of some Streptomyces strains isolated from date palm rhizosphere soil on some toxigenic fungi.

Date palm (Phoenix dactylifera L.) is considered the main crop in deserts and arid areas such as Saudi Arabia. Five Streptomyces species and other fungal species were isolated from date palm rhizosphere soil of several cultivars, such as Barhi, Khalas, Sullaj, and Sukkari, in the Ghat and El-Gouf regions. Streptomyces strains were isolated on Biolog universal growth agar medium and were identified following Biolog methods. The predominant Streptomyces isolated from this present survey was S. plicatus followed by S. rimosus, S. rutgersensus, and S. griseus. The number of soilborne fungi in the tested soil decreased with the increased number of isolated Streptomyces. There was a significant positive correlation between the date palm cultivar and the number of isolated Streptomyces. The in vitro effects of isolated Streptomyces species on some toxigenic fungi were also studied. Enzyme-linked immunosorbent assay, immunoaffinity column chromatography, and high-performance liquid chromatography were used to study the mycotoxins. The concentration of most of the tested mycotoxins was reduced significantly with the presence of the Streptomyces isolates. Results indicate that some Streptomyces isolates established in date palm rhizosphere have the ability to reduce production of mycotoxins of some toxigenic fungi; thus they have the potential of reducing the subsequent disease occurrence. Therefore they can be applied in wider range as biocontrol agents.

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer.

Oomycete species occupy many different environments and many ecological niches. The genera Phytophthora and Pythium for example, contain many plant pathogens which cause enormous damage to a wide range of plant species. Proper identification to the species level is a critical first step in any investigation of oomycetes, whether it is research driven or compelled by the need for rapid and accurate diagnostics during a pathogen outbreak. The use of DNA for oomycete species identification is well established, but DNA barcoding with cytochrome c oxidase subunit I (COI) is a relatively new approach that has yet to be assessed over a significant sample of oomycete genera. In this study we have sequenced COI, from 1205 isolates representing 23 genera. A comparison to internal transcribed spacer (ITS) sequences from the same isolates showed that COI identification is a practical option; complementary because it uses the mitochondrial genome instead of nuclear DNA. In some cases COI was more discriminative than ITS at the species level. This is in contrast to the large ribosomal subunit, which showed poor species resolution when sequenced from a subset of the isolates used in this study. The results described in this paper indicate that COI sequencing and the dataset generated are a valuable addition to the currently available oomycete taxonomy resources, and that both COI, the default DNA barcode supported by GenBank, and ITS, the de facto barcode accepted by the oomycete and mycology community, are acceptable and complementary DNA barcodes to be used for identification of oomycetes.