Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency.

As global demand for pork continues to rise, strategies to enhance nitrogen utilization efficiency (NUE) in pig farming have become vital for environmental sustainability. This study explored the relationship between the fecal microbiota, their metabolites, and NUE in crossbreed fattening pigs with a defined family structure. Pigs were kept under standardized conditions and fed in a two-phase feeding regime. In each phase, one fecal sample was collected from each pig. DNA was extracted from a total of 892 fecal samples and subjected to target amplicon sequencing. The results indicated an influence of sire, sampling period (SP), and sex on the fecal microbiota. Streptococcus emerged as a potential biomarker in comparing high and low NUE pigs in SP 1, suggesting a genetic predisposition to NUE regarding the fecal microbiota. All fecal samples were grouped into two enterotype-like clusters named cluster LACTO and cluster CSST. Pigs' affiliation with enterotype-like clusters altered over time and might be sex-dependent. The stable cluster CSST demonstrated the highest NUE despite containing pigs with lower performance characteristics such as average daily gain, dry matter intake, and daily nitrogen retention. This research contributes with valuable insights into the microbiome's role in NUE, paving the way for future strategies to enhance sustainable pig production.

Effect of dietary calcium source, exogenous phytase, and formic acid on inositol phosphate degradation, mineral and amino acid digestibility, and microbiota in growing pigs.

The choice of the calcium (Ca) source in pig diets and the addition of formic acid may affect the gastrointestinal inositol phosphate (InsP) degradation and thereby, phosphorus (P) digestibility in pigs. This study assessed the effects of different Ca sources (Ca carbonate, Ca formate), exogenous phytase, and chemical acidification on InsP degradation, nutrient digestion and retention, blood metabolites, and microbiota composition in growing pigs. In a randomized design, 8 ileal-cannulated barrows (24 kg initial BW) were fed 5 diets containing Ca formate or Ca carbonate as the only mineral Ca addition, with or without 1,500 FTU/kg of an exogenous hybrid 6-phytase. A fifth diet was composed of Ca carbonate with phytase but with 8 g formic acid/kg diet. No mineral P was added to the diets. Prececal InsP6 disappearance and P digestibility were lower (P ≤ 0.032) in pigs fed diets containing Ca formate. In the presence of exogenous phytase, InsP5 and InsP4 concentrations in the ileal digesta were lower (P ≤ 0.019) with Ca carbonate than Ca formate. The addition of formic acid to Ca carbonate with phytase diet resulted in greater (P = 0.027) prececal InsP6 disappearance (87% vs. 80%), lower (P = 0.001) InsP5 concentration, and greater (P ≤ 0.031) InsP2 and myo-inositol concentrations in the ileal digesta. Prececal P digestibility was greater (P = 0.004) with the addition of formic acid compared to Ca carbonate with phytase alone. Prececal amino acid (AA) digestibility of some AA was greater with Ca formate compared to Ca carbonate but only in diets with phytase (P ≤ 0.048). The addition of formic acid to the diet with Ca carbonate and phytase increased (P ≤ 0.006) the prececal AA digestibility of most indispensable AA. Exogenous phytase affected more microbial genera in the feces when Ca formate was used compared to Ca carbonate. In the ileal digesta, the Ca carbonate diet supplemented with formic acid and phytase led to a similar microbial community as the Ca formate diets. In conclusion, Ca formate reduced prececal InsP6 degradation and P digestibility, but might be of advantage in regard to prececal AA digestibility in pigs compared to Ca carbonate when exogenous phytase is added. The addition of formic acid to Ca carbonate with phytase, however, resulted in greater InsP6 disappearance, P and AA digestibility values, and changed ileal microbiota composition compared to Ca carbonate with phytase alone.

The study aimed to investigate the effects of dietary calcium sources, exogenous phytase, and formic acid on inositol phosphate (InsP) degradation and nutrient digestibility in ileal-cannulated growing pigs. It also evaluated the concentrations of phosphorus, calcium, and myo-inositol in the blood, the composition of the microbiota in the ileal digesta and feces, and the concentrations of volatile fatty acids in the feces. Replacing calcium carbonate with calcium formate in the feed reduced prececal InsP6 disappearance and phosphorus digestibility. However, adding formic acid to a diet containing calcium carbonate and phytase enhanced prececal InsP6 disappearance and phosphorus digestibility, and increased InsP2 and myo-inositol concentrations in the ileal digesta. The dietary treatments resulted in more pronounced alterations of the microbiota in the feces than the ileal digesta. In ileal digesta, the shifts in relative abundance were primarily evident among low-abundant genera, while in feces, changes were observed in a larger number among genera with higher levels of abundance. The findings of this study suggest that calcium formate is not a suitable alternative to calcium carbonate for phosphorus digestibility in growing pigs. The release of phosphorus from InsP by exogenous phytase can be increased by adding formic acid.

Nitrogen and lysine utilization efficiencies, protein turnover, and blood urea concentrations in crossbred grower pigs at marginal dietary lysine concentration.

Nitrogen utilization efficiency (NUE) and lysine utilization efficiency (LUE) are key indicators of sustainable pork production and vary depending on nutritional and non-nutritional factors. The objective was to study NUE and LUE together with concentrations of blood urea nitrogen (BUN) and other metabolites in growing pigs fed diets with marginal Lys concentrations at 11-13 wk (40.5 kg mean BW) and 14 to 16 wk (60.2 kg mean BW). The cereal grain-soybean meal-based diets contained 10.6 and 7.9 g Lys/kg DM in periods 1 and 2, respectively. Feed intake and BW were measured for 508 individually penned pigs, and blood samples were collected 5 h after morning feeding at weeks 13 and 16. A subgroup of 48 barrows was used in a nitrogen (N) metabolism trial at weeks 13 and 16. In this subgroup, the mean N retention of pigs (27.3 g N/d) and mean LUE (70%) were not different between the periods, but NUE was higher in period 1 (47%) than in period 2 (43%) (P < 0.001). After administration of a single dose of 15N labeled glycine and measurement of 15N recovery in urine, the calculated whole-body protein turnover did not differ between the periods. The rate of protein synthesis was positively correlated with NUE (P < 0.001), but protein degradation was not. Excretion of urea-N in urine accounted for 80% of the total urinary N and was positively correlated with BUN. The N retention of all 508 pigs was estimated using an equation that was derived from the N metabolism data. N retention was on average 31.4 g/d, equal in both periods, and higher in barrows than in gilts in period 2, but not in period 1 (P = 0.003). The calculated NUE was, on average, 47% and was lower in barrows than in gilts (P < 0.001) and higher in period 1 than in period 2 (P < 0.001). The calculated LUE was, on average, 71%, and was lower in barrows than in gilts in period 2, but not in period 1 (P < 0.001). The BUN concentration was higher in barrows than in gilts (P < 0.001) and higher in period 1 than in period 2 (P < 0.001). BUN concentration was negatively correlated with NUE in Periods 1 (r = -0.50) and 2 (r = -0.15) (P < 0.05). We concluded that the maximum LUE was in the range of 70-72% under the conditions of this study, and only small differences between the periods and sexes existed. Protein synthesis, rather than degradation, appears to affect NUE. BUN concentration may be useful for estimating NUE in a large group of animals fed a diet with a marginal Lys concentration.

Increasing the utilization of protein and amino acids by pigs is an effective tool for improving the sustainability of pork production. This study showed that the utilization of lysine, the limiting amino acid in pigs, can reach 72% in growing pigs aged 11­16 wk when fed diets based on cereal grains and soybean meal. The average utilization of total nitrogen was 47%, with high variation among the pigs. Higher nitrogen utilization was associated with lower concentration of urea in the blood. This indicates that the blood urea concentration is an easy-to-determine proxy trait for nitrogen utilization in pigs when the concentration of lysine in the feed is low. Only small differences were observed between gilts and barrows during the investigation period. Nitrogen utilization increased when pigs had a higher rate of whole-body protein synthesis, which was associated with anabolic hormone concentrations in the blood.

Effect of dietary calcium concentration and exogenous phytase on inositol phosphate degradation, mineral digestibility, and gut microbiota in growing pigs.

Variations in the dietary Ca concentration may affect inositol phosphate (InsP) degradation, and thereby, P digestibility in pigs. This study assessed the effects of dietary Ca concentration and exogenous phytase on InsP degradation, nutrient digestion and retention, blood metabolites, and microbiota composition in growing pigs with ileal cannulation. In a completely randomized row-column design with four periods, eight ileal-cannulated barrows (initial body weight 27 kg) were fed four corn-soybean- and rapeseed meal-based diets containing 5.5 or 8.5 g Ca/kg dry matter (DM), with or without 1,500 FTU of an exogenous hybrid-6-phytase/kg diet. No mineral P was added and the P concentration in the feed was 4.8 g P/kg DM. Prececal InsP6 disappearance in pigs fed diets containing exogenous phytase was lower (P = 0.022) with additional Ca than without. Concentrations of InsP2-4 isomers and myo-inositol in the distal ileal digesta and prececal P digestibility were greater (P < 0.001) with exogenous phytase than without exogenous phytase. In feces, InsP6 disappearance was lower (P < 0.002) and concentration of InsP5 and InsP4 isomers was higher (P ≤ 0.031) with additional Ca compared to without additional Ca. The prececal amino acid digestibility, energy digestibility, and hindgut disappearance of energy did not differ. The Shannon diversity index of the microbiota in the distal ileal digesta and feces was similar among the diets but was lower in the distal ileal digesta than in the feces (P < 0.001). Permutation analysis of variance revealed no dietary differences between the bacterial groups within the ileal digesta and fecal samples (P > 0.05). In conclusion, additional Ca reduced the effect of exogenous phytase on prececal InsP6 degradation. Endogenous InsP degradation was impaired by additional Ca only in the hindgut but the abundance of bacterial genera in feces was not affected.

The dietary calcium concentration can influence the release of phosphorus from phytate in growing pigs. This study assessed the effects of dietary calcium and exogenous phytase on inositol phosphate (InsP) degradation and nutrient digestibility in ileal-cannulated, growing pigs. The phosphorus, calcium, and myo-inositol concentrations in the blood, microbiota composition in the ileal digesta and feces, and volatile fatty acid concentrations in the feces were also evaluated. Additional dietary calcium decreased prececal inositol hexakisphosphate (InsP6) disappearance, but only with exogenous phytase. Concentrations of InsP2-4 isomers and myo-inositol in the ileal digesta and prececal phosphorus digestibility were greater with exogenous phytase, but not affected by dietary calcium concentration. In contrast, fecal InsP6 disappearance was lower and the concentration of InsP4-5 isomers in feces was greater with additional dietary calcium. Regarding microbiota, the Shannon diversity index was lower in ileal digesta than in feces but was unaffected by dietary calcium concentration or exogenous phytase. In conclusion, dietary calcium concentration is relevant for phytate disappearance in feces, but not in the ileal digesta. However, when exogenous phytase is used, the dietary calcium concentration is important because prececal phytate degradation is changed.