Construction of a reference molecular linkage map of globe artichoke (Cynara cardunculus var. scolymus).

The genome organization of globe artichoke (Cynara cardunculus var. scolymus), unlike other species belonging to Asteraceae (=Compositae) family (i.e. sunflower, lettuce and chicory), remains largely unexplored. The species is highly heterozygous and suffers marked inbreeding depression when forced to self-fertilize. Thus a two-way pseudo-testcross represents the optimal strategy for linkage analysis. Here, we report linkage maps based on the progeny of a cross between globe artichoke (C. cardunculus var. scolymus) and cultivated cardoon (C. cardunculus var. altilis). The population was genotyped using a variety of PCR-based marker platforms, resulting in the identification of 708 testcross markers suitable for map construction. The male map consisted of 177 loci arranged in 17 major linkage groups, spanning 1,015.5 cM, while female map was built with 326 loci arranged into 20 major linkage groups, spanning 1,486.8 cM. The presence of 84 loci shared between these maps and those previously developed from a cross within globe artichoke allowed for map alignment and the definition of 17 homologous linkage groups, corresponding to the haploid number of the species. This will provide a favourable property for QTL scanning; furthermore, as 25 mapped markers (8%) correspond to coding regions, it has an additional value as functional map and might represent an important genetic tool for candidate gene studies in globe artichoke.

Microcalorimetric and manometric tests to assess anammox activity.

The present study compares two experimental methods to evaluate Anammox activity based on the assessment of (1) the N(2) production rate by a manometric device, as previously proposed, and (2) the heat production rate by a microcalorimeter. Two samples of Anammox suspended biomass were taken from a pilot-plant, and their specific Anammox activity measured by both techniques. Both methods were successfully applied. As for calorimetric tests, they were performed for the first time on Anammox enriched sludge samples. Comparisons between the specific Anammox activities estimated by manometry and calorimetry and between expected (from the reaction enthalpy) and measured heat productions were performed. Promising results were obtained.

Digestate treatment with algae-bacteria consortia: A field pilot-scale experimentation in a sub-optimal climate area.

This paper addresses the efficiency of a microalgae-based agricultural digestate treatment at pilot-scale in an outdoor raceway pond (880 L, pH-dependent CO2 dosage) and in a bubble column (74.5 L, air-bubbling). Specifically, nitrogen removal, evolution of the algae-bacteria consortium, and the actual process applicability in the Po Valley climate are discussed. The performance of the two reactors varied seasonally. The average algal productivity in the raceway was 32.4 ±â€¯33.1 mg TSS·L-1·d-1 (8.2 ±â€¯8.5 g TSS·m-2·d-1) while in the PBR it was 25.6 ±â€¯26.8 mg TSS·L-1·d-1; the average nitrogen removal was 20 ±â€¯29% (maximum 78%) and 22 ±â€¯29% (maximum 71%) in the raceway and in the column, respectively. Nevertheless, nitrification had a key role as 61 ±â€¯24% and 52 ±â€¯32% of the nitrogen load was oxidized in the raceway and in the column, respectively.

An integrated approach in a municipal WWTP: anaerobic codigestion of sludge with organic waste and nutrient removal from supernatant.

Co-digestion appears to be an interesting solution to increase the biogas production of poorly performing under-loaded digesters of waste activated sludge. In the Florence WWTP anaerobic codigestion could increase nitrogen and phosphorus loading rates and thus lower the nutrient removal efficiency. In order to develop an integrated solution to upgrade the Florence WWTP, the different process units were tested in experimental plants. Anaerobic codigestion with source-collected organic solid waste in a pilot-scale bioreactor showed an increase of GPR from 0.15 to 0.45 Nl biogas/l/d with 23% of organic waste loaded. Autotrophic nitrogen removal was carried out in two lab-scale pilot plants which were fed with a real anaerobic supernatant after phosphate removal via struvite formation. The nitritation MBBR has been working for one year at steady-state conditions with a perfect nitrite/ammonium ratio equal to 1:1. Anammox biomass enrichment was performed in a suspended biomass SBR and the specific nitrogen removal rate increased from 1.7 to 58 gN/kgVSS/d in 375 days.

A simple method to evaluate the short-term biogas yield in anaerobic codigestion of WAS and organic wastes.

The present study was aimed at setting and applying a procedure to measure the anaerobic degradability of different organic substrates by short-term tests (2-7 days) carried out at lab-scale with a low food to biomass (F/M) ratio. All tests were carried out using an acclimated sludge taken from a pilot-plant anaerobic digester (200 L). Trials were performed with a manometric system. The experimental reliability of the device in measuring the anaerobic degradability was assessed by several preliminary tests carried out using acetate and glucose as reference substrates. The average conversion to methane was 99% for acetate and of 83% for glucose. The results of tests in triplicate showed the high repeatability of the method with an average coefficient of variation lower than 2%. Then, the lab-scale procedure was applied to study the short-term anaerobic degradability of complex organic substrates: thickened waste activated sludge, two kinds of organic fraction of municipal solid waste (a kitchen waste and a fruit and vegetable waste collected at the wholesale market of Florence), olive mill wastewater and freshly harvested grass. Results indicated that organic fraction of municipal solid waste, olive mill wastewater and grass were characterized by a much higher anaerobic degradability if compared to the thickened activated sludge, well in agreement with literature data.

Inhibition on anammox bacteria upon exposure to digestates from biogas plants treating the organic fraction of municipal solid waste and the role of conductivity.

The aim of this research was to evaluate the applicability of the anammox process for removing nitrogen from the supernatant originating from the anaerobic digestion of the organic fraction of municipal solid waste (OFMSW). The short term inhibitory potential of this concentrated wastewater was evaluated by means of batch tests in terms of maximum specific anammox activity reduction. A total of 20 real wastewater samples were tested originating from 4 different full scale anaerobic digestion plants treating OFMSW. Activity reduction between 73% and 89% was observed in the presence of undiluted real wastewaters. The specific activity remained stable for 6-7days after the initial reduction, thus suggesting its treatability even without dilution. The inhibitory effect of both the real and synthetic saline media tested could be modelled as a function of conductivity. IC50 of 6.1mS/cm was obtained for exposure to the tested liquid fraction of biowaste digestate.

Autotrophic nitrogen removal by a two-step SBR process applied to mixed agro-digestate.

The aim of this research was to evaluate the applicability of partial-nitritation/anammox processes for biological N removal from a centrifuge supernatant coming from a full scale anaerobic digester fed on a mixture of piggery manure, poultry manure, and agro-wastes. Stable partial nitritation was achieved at pilot-scale (650L SBR), obtaining a suitable influent for the anammox lab-scale SBR reactor (3L). The anammox lab scale reactor was fed with increasing fractions of the partial nitritation effluent, blended with synthetic wastewater. In the last 100days no dilution was used. The nitrogen loading rate applied to the anammox reactor was 0.5-0.6gNL(-)(1)d(-)(1) and the average nitrogen removal was 91±10%. During the first days of operation with undiluted supernatant, the maximum anammox activity in the SBR decreased, but recovered afterwards, suggesting the ability of the anammox biomass to acclimate to the wastewater. N2O emissions in both reactors were also measured.

Morbidity and mortality after D1 and D2 gastrectomy for cancer: interim analysis of the Italian Gastric Cancer Study Group (IGCSG) randomised surgical trial.

BACKGROUND: The disadvantages of D2 gastrectomy have been mostly related to splenopancreatectomy. Unlike two large European trials, we have recently showed the safety of D2 dissection with pancreas preservation in a one-arm phase I-II trial. This new randomised trial was set up to compare post-operative morbidity and mortality and survival after D1 and D2 gastrectomy among the same experienced centres that participated into the previous trial. METHODS: In a prospective multicenter randomised trial, D1 gastrectomy was compared to D2 gastrectomy. Central randomisation was performed following a staging laparotomy in 162 patients with potentially curable gastric cancer. FINDINGS: Of 162 patients randomised, 76 were allocated to D1 and 86 to D2 gastrectomy. The two groups were comparable for age, sex, site, TNM stage of tumours, and type of resection performed. The overall post-operative morbidity rate was 13.6%. Complications developed in 10.5% of patients after D1 and in 16.3% of patients after D2 gastrectomy. This difference was not statistically significant (p<0.29). Reoperation rate was 3.4% after D2 and 2.6% after D1 resection. Post-operative mortality rate was 0.6% (one death); it was 1.3% after D1 and 0% after D2 gastrectomy. INTERPRETATION: Our preliminary data confirm that in very experienced centres morbidity and mortality after extended gastrectomy can be as low as those showed by Japanese authors. They also suggest that D2 gastrectomies with pancreas preservation are not followed by significantly higher morbidity and mortality than D1 resections.

Extended lymph node dissection for gastric cancer: results of a prospective, multi-centre analysis of morbidity and mortality in 118 consecutive cases.

This study reports interim data on post-operative morbidity, hospital mortality and duration of hospital stay of Italian patients undergoing extended lymph-node dissection combined with a pancreas-preserving technique for gastric cancer. Of the 218 patients admitted to one of eight general and/or university hospitals in North Italy, 118 were enrolled in the trial. Eligible patients presented with proven primary adenocarcinoma of the stomach without clinical evidence of distant, peritoneal and/or liver metastasis, or metastasis in para-aortic and retropancreatic nodes at intraoperative biopsy. Patients underwent the extended procedure as described by the Japanese Research Society for the Study of Gastric Cancer, following the Maruyama pancreas-preserving technique. A strict quality control system was used to ensure the performance of a standard surgical treatment. A surgeon of the reference centre (M.D.), who stayed at the National Cancer Center Hospital in Tokyo to learn the D2 technique from a specialist Japanese surgeon, became the trial supervisor and assisted each surgeon in all the Italian participating centres. The patients were staged according both to the TNM system and to the General Rules for the Gastric Cancer Study in Surgery and Pathology. Post-operative surgical complications developed in 21 patients (17.8%). The non-surgical complication rate was 2.5%. Reoperation was necessary in six patients (5%), all of whom survived. The 30-day mortality rate for the eligible group was 2.5%. The overall hospital mortality was the same. Total gastrectomy was associated with a slightly higher operative mortality (4.5% vs 1.3%). Only one patient died from an anastomotic leak. The rate of leakages was higher after total than after distal gastrectomy (15.9 vs 5.4%); the association of splenectomy and pancreatectomy worsened the morbidity rate. D2 lymphadenectomy with pancreas-preserving technique, when performed at experienced centres, seems a feasible and safe technique for the radical treatment of gastric cancer in selected Western patients.

[Factors affecting recurrence after surgical treatment of Crohn disease]. / Fattori influenzanti la recidiva dopo trattamento chirurgico del morbo di Crohn.

Surgery does not cure Crohn's disease, but only its complications, as the recurrence rate that requires a new intervention is 6% per year. The resections performed by the surgeon should be as limited as possible, in order to avoid the consequent malabsorption. The identification of two forms of Crohn's disease, with different aggressiveness, has found that the stricturoplastic is an encouraging way of treatment for those forms with a prevalent stenotic component. A lot of studies have evaluated the relationships between recurrences and resections on margins microscopically free or affected by the disease. The aim of this study was a retrospective verification of the influence of any possible microscopical residue of the disease on the recurrence rate, evaluating whether the two different forms of aggressiveness of the disease (presence of stenosis or fistula) can influence the rate and precocity of the recurrence onset. In 37 patients operated for the first time of ileal or ileocolic resection, the overall recurrence rate was 18.9%; neither the presence of microscopically affected margins nor the presence of fistulas or stenosis has showed to have an influence on the onset of the recurrences. The only data that emerged is a greater precocity of the onset of recurrence in those patients whose disease was characterised by the presence of enteric fistulas. The forms in which fistulas and perforations were evident showed a recurrence rate not significantly higher than that of forms with stenosis only, but the period of time free from the disease was notably longer for the latter. In the end, patients in which typical granulomas were present showed a recurrence rate of just 9%, compared to 23% of patients in which granulomas were absent. MATERIALS AND METHODS. From 1980 through 1992, 61 patients affected by Crohn's disease were operated. There were 39 men and 22 women (mean age: 40.4 years). The mean length of the follow-up was 55.5 months. It was the first operation for 43 patients, while 9 had already undergone surgery in other hospitals; 9 patients showed anorectal complications. The operations performed on the patients for the first time have been ileal resection in the following localizations: duodenum-jejunum 4, jejunum and ileal 34, colic 5; the recurrences treated have been ileal-jejunum in 7 cases and colic in 2. In 2 cases of recurrence a stricturoplastic has been performed. RESULTS. The operative mortality was of 3 patients: 2 due to sepsis for anastomotic dehiscence and 1 to systemic mycosis. Four postoperative fistulas were observed. Recurrence of the disease occurred in 13 patients (26.5%), specifically in 21.4% of the patients operated for the first time and in 57.1% of those that were operated for recurrences. DISCUSSION AND CONCLUSIONS. In the treatment of Crohn's disease, it is important to identify any possible group with high risk of recurrence in order to undertake an appropriate medical prophylaxis. The results concerning the presence of microscopical disease on the resection margins are today still controversial. Some groups of authors prefer wide resection margins, some others are in favour of restricted resections. Our considerations let us assert that in those patients in which the resections have been performed on margins with microscopic presence of the disease, the interval before the recurrence occurs is not significantly shorter than that of patients with free margins. But the patients suffering from Crohn's disease with fistulae, probably need medical post-operative therapy to delay recurrences onset.

[Radiologic evaluation of ileal reservoirs. Our experience]. / Valutazione radiologica dei reservoirs ileali. Nostra esperienza.

A radiological investigation was performed in 25 patients subjected to colectomy, mucosal proctectomy and endorectal ileo-anal anastomosis after the creation of an ileal reservoir. The patients had suffered from ulcerative colitis or familial polyposis. Radiology was of great value in the demonstration of post-operative complications.

Clinical findings in a family with familial adenomatous polyposis and a missense mutation of the adenomatous polyposis coli gene.

BACKGROUND: More than 100 different mutations in the adenomatous polyposis coli (APC) gene have been identified; virtually all lead to the production of a truncated protein. Clinical details of patients with missense mutations undoubtedly cosegregating with the disease have not been reported and may be relevant in understanding the APC protein function. METHODS: In one family with familial adenomatous polyposis (FAP) the APC gene was analyzed by SSCP and sequencing of the aberrant SSCP band. RESULTS: A missense mutation in exon 15 at nucleotide 4921 segregating with the disease was observed. This predicts a tryptophan instead of an arginine at amino acid 1641 of the APC protein. No such mutation was present in 100 control subjects. CONCLUSIONS: In this family the colonic manifestations are as expected for classical FAP. However, the occurrence of congenital hypertrophy of the retinal pigment epithelium is unusual, owing to the inconsistency of this manifestation between family members and because congenital hypertrophy of the retinal pigment epithelium is generally absent when mutations are after codon 1387.