Plant-plant interactions influence phylogenetic diversity at multiple spatial scales in a semi-arid mountain rangeland.

Molecular phylogenies are increasingly used to understand how biotic interactions and environment shape phylogenetic community structure (PCS). However, we do not understand the effects of plant-plant interactions and environment on PCS and phylogenetic diversity across spatial scales, particularly in rangelands. Here, we ask: (1) do plant-plant interactions and environment affect PCS and phylogenetic diversity differently across the three spatial scales of the patch, the community, and the habitat? (2) What are the impacts of dominant cushion-nurse plants on the phylogenetic structure of plant communities? We assessed the PCS of semi-arid plant communities along an elevation gradient at the patch, community and habitat scales. Then, we assessed co-occurrence patterns along two sample slopes. Our results indicated important roles for biotic interactions and environmental filtering in determining phylogenetic diversity, with biotic interactions, in particular, having a stronger tendency to increase phylogenetic diversity. This is most likely due to the asymmetrical effects of nurse plants across the three spatial scales on our two different slopes. The impact of biotic interactions caused non-random phylogenetic patterns in more severe environments. In conclusion, biotic interactions influence phylogenetic diversity by altering PCS across aspects and along elevation gradients.

Drivers of vegetative dormancy across herbaceous perennial plant species.

Vegetative dormancy, that is the temporary absence of aboveground growth for ≥ 1 year, is paradoxical, because plants cannot photosynthesise or flower during dormant periods. We test ecological and evolutionary hypotheses for its widespread persistence. We show that dormancy has evolved numerous times. Most species displaying dormancy exhibit life-history costs of sprouting, and of dormancy. Short-lived and mycoheterotrophic species have higher proportions of dormant plants than long-lived species and species with other nutritional modes. Foliage loss is associated with higher future dormancy levels, suggesting that carbon limitation promotes dormancy. Maximum dormancy duration is shorter under higher precipitation and at higher latitudes, the latter suggesting an important role for competition or herbivory. Study length affects estimates of some demographic parameters. Our results identify life historical and environmental drivers of dormancy. We also highlight the evolutionary importance of the little understood costs of sprouting and growth, latitudinal stress gradients and mixed nutritional modes.

Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae).

PREMISE OF THE STUDY: The slipper orchids (Cypripedioideae) are a morphologically distinct subfamily of Orchidaceae. They also have some of the largest genomes in the orchids, which may be due to polyploidy or some other mechanism of genome evolution. We generated 10 transcriptomes and incorporated existing RNA-seq data to infer a multilocus nuclear phylogeny of the Cypripedioideae and to determine whether a whole-genome duplication event (WGD) correlated with the large genome size of this subfamily. Knowing more about timing of ancient polyploidy events can help us understand the evolution of one of the most species-rich plant families. METHODS: Transcriptome data were used to identify low-copy orthologous genes to infer a phylogeny of Orchidaceae and to identify paralogs to place any WGD events on the species tree. KEY RESULTS: Our transcriptome phylogeny confirmed relationships published in previous studies that used fewer markers but incorporated more taxa. We did not find a WGD event at the base of the slipper orchids; however, we did identify one on the Orchidaceae stem lineage. We also confirmed the presence of a previously identified WGD event deeper in the monocot phylogeny. CONCLUSIONS: Although WGD has played a role in the evolution of Orchidaceae, polyploidy does not appear to be responsible for the large genome size of slipper orchids. The conserved set of 775 largely single-copy nuclear genes identified in this study should prove useful in future studies of orchid evolution.

Demographic shifts related to mycoheterotrophy and their fitness impacts in two Cephalanthera species.

Evolutionary losses of photosynthesis in terrestrial plants all originate in photosynthetic ancestors. The adaptive context under which this transition happens has remained elusive because of the rarity of plants in which both photosynthetic and non-photosynthetic forms exist as a polymorphism. Here, we report on demographic patterns in photosynthetic ("green") and nonphotosynthetic ("albino") individuals within populations of two such species, Cephalanthera damasonium and C. longifolia, which also acquire nutrition from their mycorrhizal hosts (partial mycoheterotrophy). We hypothesized that demographic shifts in albinos relative to greens would include compensatory patterns with respect to fitness, such that maladaptive changes to survival or reproduction would be adaptively countered by changes to other parameters, such as growth probabilities. We tracked individuals in two populations of C. damasonium for 3 yr, and in one population of C. longifolia for 14 yr. We then analyzed vital rates for both phenotypes using general linear mixed models (GLMMs) and multi-state capture mark-recapture models (CMR), and used these models to develop size-classified, function-based population projection matrices. We estimated fitness as the deterministic population growth rate (λ) for each phenotype, and explored the impact of shifts in demographic patterns to albinism via life table response experiments (LTREs). Mortality differed between greens and albinos, but not similarly across species. Albinos generally sprouted less than greens, and flowered more when small but less at other times. Albinos typically had a higher probability of fruiting, although their lower flower numbers yielded lower numbers of fruits overall. Fitness did not differ significantly among phenotypes. Thus, we did not find significant evidence that albinism is adaptive or maladaptive; however, if in fact it is the latter, then we did find evidence of incomplete compensation for declines in survival and reproduction from growth transitions, particularly to small flowering size classes in C. damasonium, and to large vegetative size classes in C. longifolia. These patterns indicate some support for the idea that albinism may lead to the speciation of mycoheterotrophic plants.

Highly diverse and spatially heterogeneous mycorrhizal symbiosis in a rare epiphyte is unrelated to broad biogeographic or environmental features.

Symbiotic interactions are common in nature. In dynamic or degraded environments, the ability to associate with multiple partners (i.e. broad specificity) may enable species to persist through fluctuations in the availability of any particular partner. Understanding how species interactions vary across landscapes is necessary to anticipate direct and indirect consequences of environmental degradation on species conservation. We asked whether mycorrhizal symbiosis by populations of a rare epiphytic orchid (Epidendrum firmum) is related to geographic or environmental heterogeneity. The latter would suggest that interactions are governed by environmental conditions rather than historic isolation of populations and/or mycorrhizal fungi. We used DNA-based methods to identify mycorrhizal fungi from eleven E. firmum populations in Costa Rica. We used molecular and phylogenetic analyses to compare associations. Epidendrum firmum exhibited broad specificity, associating with diverse mycorrhizal fungi, including six Tulasnellaceae molecular operational taxonomic units (MOTUs), five Sebacinales MOTUs and others. Notably, diverse mycorrhizal symbioses formed in disturbed pasture and roadside habitats. Mycorrhizal fungi exhibited significant similarity within populations (spatial and phylogenetic autocorrelation) and significant differences among populations (phylogenetic community dissimilarity). However, mycorrhizal symbioses were not significantly associated with biogeographic or environmental features. Such unexpected heterogeneity among populations may result from complex combinations of fine-scale environmental factors and macro-evolutionary patterns of change in mycorrhizal specificity. Thus, E. firmum exhibits broad specificity and the potential for opportunistic associations with diverse fungi. We suggest that these characteristics could confer symbiotic assurance when mycorrhizal fungi are stochastically available, which may be crucial in dynamic or disturbed habitats such as tropical forest canopies.

Relative importance of pollen and seed dispersal across a Neotropical mountain landscape for an epiphytic orchid.

Populations of many species are isolated within narrow elevation bands of Neotropical mountain habitat, and how well dispersal maintains genetic connectivity is unknown. We asked whether genetic structure of an epiphytic orchid, Epidendrum firmum, corresponds to gaps between Costa Rican mountain ranges, and how these gaps influence pollen and seed flow. We predicted that significant genetic structure exists among mountain ranges due to different colonization histories and limited gene flow. Furthermore, we predicted that pollen movement contributes more to gene flow than seeds because seeds are released into strong winds perpendicular to the narrow northwest-southeast species distribution, while the likely pollinators are strong fliers. Individuals from 12 populations and three mountain ranges were genotyped with nuclear microsatellites (nDNA) and chloroplast sequences (cpDNA). Genetic diversity was high for both markers, while nDNA genetic structure was low (FSTn  = 0.020) and cpDNA structure was moderate (FSTc  = 0.443). Significant cpDNA barriers occurred within and among mountain ranges, but nDNA barriers were not significant after accounting for geographic distance. Consistent with these contrasting patterns of genetic structure, pollen contributes substantially more to gene flow among populations than seed (mp /ms  = 46). Pollinators mediated extensive gene flow, eroding nDNA colonization footprints, while seed flow was comparatively limited, possibly due to directional prevailing winds across linearly distributed populations. Dispersal traits alone may not accurately inform predictions about gene flow or genetic structure, supporting the need for research into the potentially crucial role of pollinators and landscape context in gene flow among isolated populations.

Effective population size in a partially clonal plant is not predicted by the number of genetic individuals.

Estimating effective population size (N e) is important for theoretical and practical applications in evolutionary biology and conservation. Nevertheless, estimates of N e in organisms with complex life-history traits remain scarce because of the challenges associated with estimation methods. Partially clonal plants capable of both vegetative (clonal) growth and sexual reproduction are a common group of organisms for which the discrepancy between the apparent number of individuals (ramets) and the number of genetic individuals (genets) can be striking, and it is unclear how this discrepancy relates to N e. In this study, we analysed two populations of the orchid Cypripedium calceolus to understand how the rate of clonal versus sexual reproduction affected N e. We genotyped >1000 ramets at microsatellite and SNP loci, and estimated contemporary N e with the linkage disequilibrium method, starting from the theoretical expectation that variance in reproductive success among individuals caused by clonal reproduction and by constraints on sexual reproduction would lower N e. We considered factors potentially affecting our estimates, including different marker types and sampling strategies, and the influence of pseudoreplication in genomic data sets on N e confidence intervals. The magnitude of N e/N ramets and N e/N genets ratios we provide may be used as reference points for other species with similar life-history traits. Our findings demonstrate that N e in partially clonal plants cannot be predicted based on the number of genets generated by sexual reproduction, because demographic changes over time can strongly influence N e. This is especially relevant in species of conservation concern in which population declines may not be detected by only ascertaining the number of genets.

The triple helix of Plantago lanceolata: genetics and the environment interact to determine population dynamics.

The theory of evolution via natural selection predicts that the genetic composition of wild populations changes over time in response to the environment. Different genotypes should exhibit different demographic patterns, but genetic variation in demography is often impossible to separate from environmental variation. Here, we asked if genetic variation is important in determining demographic patterns. We answer this question using a long-term field experiment combined with general linear modeling of deterministic population growth rates (lambda), deterministic life table response experiment (LTRE) analysis, and stochastic simulation of demography by paternal lineage in a short-lived perennial plant, Plantago lanceolata, in which we replicated genotypes across four cohorts using a standard breeding design. General linear modeling showed that growth rate varied significantly with year, spatial block, and sire. In LTRE analysis of all cohorts, the strongest influences on growth rate were from year x spatial block, and cohort x year x spatial block interactions. In analysis of genetics vs. temporal environmental variation, the strongest impacts on growth rate were from year and year x sire. Finally, stochastic simulation suggested different genetic composition among cohorts after 100 years, and different population growth rates when genetic differences were accounted for than when they were not. We argue that genetic variation, genotype x environment interactions, natural selection, and cohort effects should be better integrated into population ecological studies, as these processes should result in deviations from projected deterministic and stochastic population parameters.

Plant-plant interactions determine natural restoration of plant biodiversity over time, in a degraded mined land.

Restoration of degraded environments is essential to mitigate adverse impacts of human activities on ecosystems. Plant-plant interactions may provide effective means for restoring degraded arid lands, but little is understood about these impacts. In this regard, we analyzed the effects of two dominant nurse plants (i.e., Artemisia sieberi and Stipa arabica) on taxonomic, functional, and phylogenetic diversity across different ages of land abandonment (i.e., control, recent, and old ages) in a limestone mine site in Iran. In addition, we considered two spatial scales: i) the plot scale (i.e., under 1m2 plots) and ii) the vegetation-patch scale (i.e., under the canopies of nurse plants), to assess nurse plant effects, land abandonment ages, and their relative importance on biodiversity facets by performing Kruskal-Wallis H test and variation partitioning analysis. Our results indicated an increase in taxonomic, functional, and phylogenetic diversity at the plot scale, when considering the presence of nurse plants under old ages of land abandonment. Such significant differences were consistent with the positive effects of Artemisia patches on taxonomic diversity and Stipa patches on functional and phylogenetic diversity. In addition, we found a larger contribution from nurse plants than land abandonment age on biodiversity variation at both spatial scales studied. Therefore, these results indicate the importance of plant-plant interactions in restoring vegetation, with their effects on the presence of beneficiary species and their functional and phylogenetic relatedness depending on the nurse life forms under the stress-gradient hypothesis.

Impact of herbivory on flowering behaviour and life history trade-offs in a polycarpic herb: a 10-year experiment.

Herbivores can have strong deleterious effects on plant growth, reproduction, and even survival. Because these effects might be strongly interrelated, the direct consumptive effects of herbivores and a variety of indirect effects are difficult to untangle. Reductions in growth, for example, may strongly impact the flowering behaviour of plant species in the current season, but at the same time incur costs to survival, growth and reproduction in the next growing season(s). To get better insights in the effects of herbivory on the flowering behaviour of the long-lived polycarpic grassland herb Primula veris L., flowering patterns were monitored over ten consecutive years under two treatments (grazing and control mowing regimes). We tested the hypothesis that the size at flowering was affected by the presence of herbivores, and whether this translated into costs to future reproduction and survival. Overall, grazed plants were significantly smaller than control plants, and the size at which plants flowered was also significantly smaller when herbivores were present. The transition probability of flowering and of surviving into the next year was significantly smaller for all plants in the current year if they had been grazed than if they had been mown, indicating that herbivory incurred costs to both flowering and survival. Grazed plants also needed longer to start flowering, had fewer flowers and flowered less frequently, causing a significantly lower proportion of flowering adults in the population. These results suggest that the observed regression in plant size due to herbivory does not allow plants to capture enough resources to guarantee regular flowering in the longer run.

Evolution of host breadth in broad interactions: mycorrhizal specificity in East Asian and North American rattlesnake plantains (Goodyera spp.) and their fungal hosts.

Host breadth is often assumed to have no evolutionary significance in broad interactions because of the lack of cophylogenetic patterns between interacting species. Nonetheless, the breadth and suite of hosts utilized by one species may have adaptive value, particularly if it underlies a common ecological niche among hosts. Here, we present a preliminary assessment of the evolution of mycorrhizal specificity in 12 closely related orchid species (genera Goodyera and Hetaeria) using DNA-based methods. We mapped specificity onto a plant phylogeny that we estimated to infer the evolutionary history of the mycorrhiza from the plant perspective, and hypothesized that phylogeny would explain a significant portion of the variance in specificity of plants on their host fungi. Sampled plants overwhelmingly associated with genus Ceratobasidium, but also occasionally with some ascomycetes. Ancestral mycorrhizal specificity was narrow in the orchids, and broadened rarely as Goodyera speciated. Statistical tests of phylogenetic inertia suggested some support for specificity varying with increasing phylogenetic distance, though only when the phylogenetic distance between suites of fungi interacting with each plant taxon were taken into account. These patterns suggest a role for phylogenetic conservatism in maintaining suits of fungal hosts among plants. We stress the evolutionary importance of host breadth in these organisms, and suggest that even generalists are likely to be constrained evolutionarily to maintaining associations with their symbionts.

Longitudinal analysis of Plantago: adaptive benefits of iteroparity in a short-lived, herbaceous perennial.

Theory suggests that iteroparity may confer greater fitness than semelparity in situations in which temporal environmental variation is high and unpredictable. Variable age-specific mortality, density dependence, and other factors may also favor iteroparity over semelparity. Here, we empirically test the adaptive benefits of greater numbers of reproductive years in a study of reproductive schedules in an experimental population of a short-lived polycarpic perennial, Plantago lanceolata. A large experimental population was established that included four cohorts with similar genetic structure. Individuals were censused for mortality, size, and reproduction for seven years. Plants experienced variable numbers of reproductive years, but one or two years were most common (approximately 46.7% of the population reproduced only once). The probability of flowering at least once prior to death was determined strongly by extrinsic, environmental or intrinsic but environmentally influenced variables, including early-life size, cohort, and block, but also varied with a number of interactions involving paternal lineage. Maternal effects explained small but significant components of the variance in the number of reproductive years among individuals in each cohort, while paternal effects were significant in only two cohorts. Number of reproductive years contributed significantly to fitness in this system, more so than all other variables tested, although most of the variation in relative fitness may be attributed ultimately to environmental influences. We suggest that the high proportion of each cohort composed of plants reproducing only once may be due to environmental constraints on either growth or size. Such environmental influences, particularly on early life size, may result in small but important indirect effects on fitness.

Spatial scale-dependent phylogenetic signal in species distributions along geographic and elevation gradients in a mountainous rangeland.

The mechanisms determining community phylogenetic structure range from local ecological mechanisms to broad biogeographical processes. How these community assembly processes determine phylogenetic structure and patterns in rangeland communities across multiple spatial scales is still poorly understood. We sought to determine whether the structure of herbaceous and shrub assemblages along local environmental gradients (elevation) and broad geography (latitude) exhibited phylogenetic signal at different spatial scales, across 2,500 ha of a mountainous rangeland. We analyzed species distribution and phylogenetic data at two spatial scales: the community level (1 m2 sample units obtained by stratified random sampling) and the habitat level (plant assemblages identified categorically based on environmental and geographical variables). We found significant phylogenetic signal in structure and pattern at both spatial scales, along local elevational, and latitudinal gradients. Moreover, beta diversity was affected by different environmental variables in herbaceous and shrub species distributions across different spatial scales. Our results highlight the relative importance of local ecological mechanisms, including niche-based deterministic processes (environmental filtering and species interactions) as well as those of biogeographical processes, such as stochastic dispersal limitation and habitat specialization in plant assemblages of mountainous rangeland.

The evolutionary history of mycorrhizal specificity among lady's slipper orchids.

Although coevolution is acknowledged to occur in nature, coevolutionary patterns in symbioses not involving species-to-species relationships are poorly understood. Mycorrhizal plants are thought to be too generalist to coevolve with their symbiotic fungi; yet some plants, including some orchids, exhibit strikingly narrow mycorrhizal specificity. Here, we assess the evolutionary history of mycorrhizal specificity in the lady's slipper orchid genus, Cypripedium. We sampled 90 populations of 15 taxa across three continents, using DNA methods to identify fungal symbionts and quantify mycorrhizal specificity. We assessed phylogenetic relationships among sampled Cypripedium taxa, onto which we mapped mycorrhizal specificity. Cypripedium taxa associated almost exclusively with fungi within family Tulasnellaceae. Ancestral specificity appears to have been narrow, followed by a broadening after the divergence of C. debile. Specificity then narrowed, resulting in strikingly narrow specificity in most of the taxa in this study, with no taxon rewidening to the same extant as basal members of the genus. Sympatric taxa generally associated with different sets of fungi, and most clades of Cypripedium-mycorrhizal fungi were found throughout much of the northern hemisphere, suggesting that these evolutionary patterns in specificity are not the result of biogeographic lack of opportunity to associate with potential partners. Mycorrhizal specificity in genus Cypripedium appears to be an evolvable trait, and associations with particular fungi are phylogenetically conserved.

Predicting evolution in response to climate change: the example of sprouting probability in three dormancy-prone orchid species.

Although many ecological properties of species respond to climate change, their evolutionary responses are poorly understood. Here, we use data from long-term demographic studies to predict evolutionary responses of three herbaceous perennial orchid species, Cypripedium parviflorum, C. candidum and Ophrys sphegodes, to predicted climate changes in the habitats they occupy. We focus on the evolution of sprouting probability, because all three species exhibit long-term vegetative dormancy, i.e. individual plants may not emerge above-ground, potentially for several consecutive years. The drivers of all major vital rates for populations of the species were analysed with general linear mixed models (GLMMs). High-dimensionality function-based matrix projection models were then developed to serve as core elements of deterministic and stochastic adaptive dynamics models used to analyse the adaptive context of sprouting in all populations. We then used regional climate forecasts, derived from high-resolution general atmospheric circulation models, of increased mean annual temperatures and spring precipitation at the occupied sites, to predict evolutionary trends in sprouting. The models predicted that C. parviflorum and O. sphegodes will evolve higher and lower probabilities of sprouting, respectively, by the end of the twenty-first century, whereas, after considerable variation, the probability of sprouting in C. candidum will return to its current level. These trends appear to be driven by relationships between mortality and size: in C. parviflorum and C. candidum, mortality is negatively related to size in the current year but positively related to growth since the previous year, whereas in O. sphegodes, mortality is positively related to size.

An empirical test of partner choice mechanisms in a wild legume-rhizobium interaction.

Mutualisms can be viewed as biological markets in which partners of different species exchange goods and services to their mutual benefit. Trade between partners with conflicting interests requires mechanisms to prevent exploitation. Partner choice theory proposes that individuals might foil exploiters by preferentially directing benefits to cooperative partners. Here, we test this theory in a wild legumerhizobium symbiosis. Rhizobial bacteria inhabit legume root nodules and convert atmospheric dinitrogen (N2) to a plant available form in exchange for photosynthates. Biological market theory suits this interaction because individual plants exchange resources with multiple rhizobia. Several authors have argued that microbial cooperation could be maintained if plants preferentially allocated resources to nodules harbouring cooperative rhizobial strains. It is well known that crop legumes nodulate non-fixing rhizobia, but allocate few resources to those nodules. However, this hypothesis has not been tested in wild legumes which encounter partners exhibiting natural, continuous variation in symbiotic benefit. Our greenhouse experiment with a wild legume, Lupinus arboreus, showed that although plants frequently hosted less cooperative strains, the nodules occupied by these strains were smaller. Our survey of wild-grown plants showed that larger nodules house more Bradyrhizobia, indicating that plants may prevent the spread of exploitation by favouring better cooperators.

Factors influencing IUCN threat levels to orchids across Europe on the basis of national red lists.

The red list has become a ubiquitous tool in the conservation of species. We analyzed contemporary trends in the threat levels of European orchids, in total 166 species characterized in 27 national red lists, in relation to their reproductive biology and growth form, distribution area, and land cover where they occur. We found that species in central Europe are more threatened than those in the northern, southern, or Atlantic parts of Europe, while species were least threatened in southern Europe. Nectarless and tuberous species are significantly more threatened than nectariferous and rhizomatous taxa. Land cover (ratios of artificial land cover, area of pastures and grasslands, forests and inland wetlands) also significantly impacted the threat level. A bigger share of artificial land cover increases threat, and a bigger share of pasture and grassland lowers it. Unexpectedly, a bigger share of inland wetland area in a country increased threat level, which we believe may be due to the threatened nature of wetlands themselves relative to other natural land cover types. Finally, species occurring in multiple countries are on average less threatened. We believe that large-scale analysis of current IUCN national red lists as based on their specific categories and criteria may particularly inform the development of coordinated regional or larger-scale management strategies. In this case, we advocate for a coordinated EU protection and restoration strategy particularly aimed at central European orchids and those occurring in wetland area.

Longitudinal analysis in Plantago: strength of selection and reverse-age analysis reveal age-indeterminate senescence.

1. Senescence is usually viewed as increased age-specific mortality or decreased age-specific fecundity due to the declining ability of natural selection to remove deleterious age-specific mutations with age. In herbaceous perennial plants, trends in age-specific mortality are often confounded by size. Age-indeterminate senescence, where accumulated physiological damage varies strongly with environment, may be a better model of senescence in these species. 2. We analysed trends in size and fertility in Plantago lanceolata, using a long-term demographic census involving >10 years and >8,000 individuals in 4 cohorts. We used elasticity and pairwise invasion analysis of life history function-parameterized age × stage matrices to assess whether the force of natural selection declined with age. Then, we used reverse age analysis of size and fertility to assess whether age-indeterminate senescence occurred. Reverse age analysis uses longitudinal data for individuals that have died to look at trait patterns as a function of both age and remaining time to death. We hypothesized that i) the strength of natural selection would decline strongly with age, and ii) physiological condition would deteriorate for several years prior to death. 3. Both elasticity and invasion analyses suggested that the strength of natural selection through mortality declined strongly with age once size was accounted for. Further, reverse age analyses showed that individuals shrank for ~3yrs prior to death, suggesting physiological decline. Inflorescence production declined with age, and also declined in the 3 years prior to death regardless of overall age. 4 SYNTHESIS: The hypothesis that plants escape senescence generally assumes that plants can continue to grow larger and increase reproduction as they get older. The results here show that size and reproduction decline with age and the rates of these declines toward death are lifespan- and age-dependent. Further research is needed to delineate the importance of age-determinate vs. age-indeterminate factors in senescence patterns across species.

Plants do not count or do they? New perspectives on the universality of senescence.

1. Senescence, the physiological decline that results in decreasing survival and/or reproduction with age, remains one of the most perplexing topics in biology. Most theories explaining the evolution of senescence (i.e. antagonistic pleiotropy, accumulation of mutations, disposable soma) were developed decades ago. Even though these theories have implicitly focused on unitary animals, they have also been used as the foundation from which the universality of senescence across the tree of life is assumed. 2. Surprisingly, little is known about the general patterns, causes and consequences of whole-individual senescence in the plant kingdom. There are important differences between plants and most animals, including modular architecture, the absence of early determination of cell lines between the soma and gametes, and cellular division that does not always shorten telomere length. These characteristics violate the basic assumptions of the classical theories of senescence and therefore call the generality of senescence theories into question. 3. This Special Feature contributes to the field of whole-individual plant senescence with five research articles addressing topics ranging from physiology to demographic modelling and comparative analyses. These articles critically examine the basic assumptions of senescence theories such as age-specific gene action, the evolution of senescence regardless of the organism's architecture and environmental filtering, and the role of abiotic agents on mortality trajectories. 4.Synthesis. Understanding the conditions under which senescence has evolved is of general importance across biology, ecology, evolution, conservation biology, medicine, gerontology, law and social sciences. The question 'why is senescence universal or why is it not?' naturally calls for an evolutionary perspective. Senescence is a puzzling phenomenon, and new insights will be gained by uniting methods, theories and observations from formal demography, animal demography and plant population ecology. Plants are more amenable than animals to experiments investigating senescence, and there is a wealth of published plant demographic data that enable interpretation of experimental results in the context of their full life cycles. It is time to make plants count in the field of senescence.

Mycorrhizal diversity in Apostasia (Orchidaceae) indicates the origin and evolution of orchid mycorrhiza.

We demonstrated that "orchid mycorrhiza," a specialized mycorrhizal type, appeared in the common ancestor of the largest plant family Orchidaceae and that the fungal partner shifted from Glomeromycota to a particular clade of Basidiomycota in association with this character evolution. Several unique mycorrhizal characteristics may have contributed to the diversification of the family. However, the origin of orchid mycorrhiza and the diversity of mycobionts across orchid lineages still remain obscure. In this study, we investigated the mycorrhizae of five Apostasia taxa, members of the earliest-diverging clade of Orchidaceae. The results of molecular identification using nrDNA ITS and LSU regions showed that Apostasia mycorrhizal fungi belong to families Botryobasidiaceae and Ceratobasidiaceae, which fall within the order Cantharellales of Basidiomycota. Most major clades in Orchidaceae also form mycorrhizae with members of Cantharellales, while the sister group and other closely related groups to Orchidaceae (i.e., Asparagales except for orchids and the "commelinid" families) ubiquitously form symbioses with Glomeromycota to form arbuscular mycorrhizae. This pattern of symbiosis indicates that a major shift in fungal partner occurred in the common ancestor of the Orchidaceae.