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1.
J Comput Chem ; 45(13): 1046-1060, 2024 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-38216334

RESUMEN

Imidazole is a five-membered heterocycle that is part of a number of biologically important molecules such as the amino acid histidine and the hormone histamine. Imidazole has a unique ability to participate in a variety of non-covalent interactions involving the NH group, the pyridine-like nitrogen atom or the π-system. For many biologically active compounds containing the imidazole moiety, its participation in formation of hydrogen bond NH⋯O/N and following proton transfer is the key step of mechanism of their action. In this work a systematic study of the mutual influence of various paired combinations of non-covalent interactions (e.g., hydrogen bonds and π-interactions) involving the imidazole moiety was performed by means of quantum chemistry (PW6B95-GD3/def2-QZVPD) for a series of model systems constructed based on analysis of available x-ray data. It is shown that for considered complexes formation of additional non-covalent interactions can only enhance the proton-donating ability of imidazole. At the same time, its proton-accepting ability can be both enhanced and weakened, depending on what additional interactions are added to a given system. The mutual influence of non-covalent interactions involving imidazole can be classified as weak geometric and strong energetic cooperativity-a small change in the length of non-covalent interaction formed by imidazole can strongly influence its strength. The latter can be used to develop methods for controlling the rate and selectivity of chemical reactions involving the imidazole fragment in larger systems. It is shown that the strong mutual influence of non-covalent interactions involving imidazole is due to the unique ability of the imidazole ring to effectively redistribute electron density in non-covalently bound systems with its participation.

2.
Chemistry ; 30(14): e202303956, 2024 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-38131216

RESUMEN

Non-covalent interactions such as coordination of an organolithium reagent by a directing group and steric repulsion of substituents strongly affect the halogen-lithium exchange process. Here we present the manifestation of the "buttressing effect" - an indirect interaction between two substituents issued by the presence of a third group - and its influence on the ease and selectivity of the bromine-lithium exchange and the reactivity of formed aryllithiums. The increase of the size of the "buttressing" substituent strongly affects the conformation of a NMe2 group, forcing it to hinder ortho-bromine and thus slowing down the exchange. In naphthalene substrates bearing two bromines, this suppresses regioselectivity of the reaction. The "buttressing effect" forces formed aryllithiums to deaggregate, thus boosting their reactivity. This facilitates the decomposition via protolisys by ethereal solvents even at low temperatures and in some cases initiates fast Wurtz-Fittig coupling.

3.
Chempluschem ; : e202400550, 2024 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-39348283

RESUMEN

In this work heme models with four [Fe(II)(P)], five [Fe(II)(P)Im], [Fe(II)(P)(Im)O2] and six ligands [Fe(II)(P)(Im)O2], where P = porphyrin, with different spin states (ms =5, 3 and 1) of the iron atom were investigated using relativistic-corrected quantum chemistry methods (PW6B95-D3-DKH/jorge-TZP-DKH). Dependence of the iron-ligand bond properties on (i) spin state and (ii) number of ligands were analyzed using natural bond orbital analysis, electron density topology, electrostatic potential and electron localization function. It is shown that reversible binding of O2 is possible in case of formation of semicoordination bond between Fe(II) and imidazole. Binding of the fifth and sixth ligand from the energetic and orbital points of view is more favorable for the triplet Fe(II) state. At the same time for the six-coordinated complex [Fe(II)(P)(Im)O2] interconversion of Fe(II) electrons of valent 3d orbital from quintet to triplet and vice versa is possible under thermal fluctuations (energy barriers less than 2 kcal/mol).

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