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1.
Cell ; 182(5): 1284-1294.e9, 2020 09 03.
Artículo en Inglés | MEDLINE | ID: mdl-32730807

RESUMEN

The spike protein of SARS-CoV-2 has been undergoing mutations and is highly glycosylated. It is critically important to investigate the biological significance of these mutations. Here, we investigated 80 variants and 26 glycosylation site modifications for the infectivity and reactivity to a panel of neutralizing antibodies and sera from convalescent patients. D614G, along with several variants containing both D614G and another amino acid change, were significantly more infectious. Most variants with amino acid change at receptor binding domain were less infectious, but variants including A475V, L452R, V483A, and F490L became resistant to some neutralizing antibodies. Moreover, the majority of glycosylation deletions were less infectious, whereas deletion of both N331 and N343 glycosylation drastically reduced infectivity, revealing the importance of glycosylation for viral infectivity. Interestingly, N234Q was markedly resistant to neutralizing antibodies, whereas N165Q became more sensitive. These findings could be of value in the development of vaccine and therapeutic antibodies.


Asunto(s)
Antígenos Virales/genética , Betacoronavirus/patogenicidad , Mutación , Glicoproteína de la Espiga del Coronavirus/genética , Células A549 , Animales , Antígenos Virales/inmunología , Betacoronavirus/genética , Betacoronavirus/inmunología , Sitios de Unión , Bovinos , Chlorocebus aethiops , Cricetinae , Perros , Glicosilación , Células HEK293 , Células HeLa , Humanos , Macaca mulatta , Células de Riñón Canino Madin Darby , Ratones , Células RAW 264.7 , SARS-CoV-2 , Glicoproteína de la Espiga del Coronavirus/química , Glicoproteína de la Espiga del Coronavirus/inmunología , Glicoproteína de la Espiga del Coronavirus/metabolismo , Porcinos , Células Vero , Virulencia/genética
2.
Heart Vessels ; 38(3): 318-331, 2023 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-36214846

RESUMEN

Acute myocardial infarction (AMI) is one of the most serious complications of coronary heart disease. Although morbidity and mortality have been decreasing year by year, acute coronary syndrome still has a high mortality rate and disability rate. To search for accurate and effective biomarkers, we explore the diagnostic and prognostic value of microRNAs (miRNAs) and the monocyte to high-density lipoprotein cholesterol ratio (MHR) in patients with AMI. By referring to the relevant literature, miR-486-5p, miR-451a and miR-21-5p were reportedly altered in the blood of patients with ischemic heart disease. These miRNAs were selected and validated in 40 AMI patients, 22 unstable angina pectoris (UAP) and 22 healthy groups (HC) by real-time fluorescent quantitative polymerase chain reaction (RT-qPCR). All patients with AMI underwent primary percutaneous coronary intervention (PCI) and were followed up 3 months after the operation. MHR and miR-451a expression were markedly elevated in plasma samples of AMI patients compared with the UAP and HC groups, but the expressions of miR-486-5p and miR-21-5p were significantly decreased. The expression level of miRNA-451a increased gradually among the three groups (p < 0.05). However, the expression of miRNA-21-5p showed a downward trend (p < 0.05). More importantly, MHR was significantly different before and after PCI in AMI patients (p < 0.05). Receiver operating characteristic (ROC) analysis indicated that MHR, miR-486-5p, miR-451a and miR-21-5p could diagnose and predict AMI. MiR-451a was a more reliable biomarker for AMI diagnosis among these miRNAs. Moreover, the combination of MHR and miRNAs had higher diagnostic value for AMI. We further demonstrated that miR-21-5p had a strong predictive ability for the occurrence of major adverse cardiovascular events (MACE) after 3 months. The results showed that circulating miR-486-5p, miR-451a, miR-21-5p and MHR may play critical roles in the early phase of AMI, and may be used as potential predictors for AMI diagnosis. Importantly, miR-451a was a more reliable biomarker in diagnosing AMI patients. Circulating miR-21-5p may be used as a predictor of MACE occurrence.


Asunto(s)
MicroARNs , Infarto del Miocardio , Intervención Coronaria Percutánea , Humanos , Pronóstico , Monocitos , MicroARNs/genética , Infarto del Miocardio/diagnóstico , Infarto del Miocardio/genética , Biomarcadores , Angina Inestable , Lipoproteínas HDL , Colesterol
3.
Appl Opt ; 62(23): 6081-6086, 2023 Aug 10.
Artículo en Inglés | MEDLINE | ID: mdl-37707074

RESUMEN

Ultra-thin has become the development trend of the direct-lit backlight unit (BLU). Double freeform surface lenses are commonly used in direct-lit BLUs to reduce thickness. However, for an ultra-thin BLU with quite small optical distance (OD) and a large LED pitch distance, the curvature of the designed lens would be quite large, which would make the final optical performance heavily affected by fabrication errors. This paper proposes a lens with freeform surfaces and microstructures. The rays from LEDs are first collimated by the freeform surfaces and the collimated rays are then reflected by the microstructures to the bottom of the BLU, which can effectively enlarge the spot size and reduce the OD. The simulation results show that the uniformity can be improved from 41.3% of the conventional double freeform surface lens to 83% when OD is 3 mm. Such hybrid lenses can avoid the fabrication of freeform surfaces with large curvature and the advantages of easy design and easy fabrication.

4.
J Clin Lab Anal ; 34(8): 2410-2417, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32529742

RESUMEN

BACKGROUND: Currently, acute myocardial infarction (AMI) represents a serious cardiovascular disease with high morbidity and mortality. Therefore, this study aimed to systematically evaluate the roles of miRNA-499 and miRNA-22 as potential biomarkers for AMI. METHODS: According to the inclusion and exclusion criteria, we measured circulating levels of miRNAs in 50 AMI patients and 50 non-MI populations. The expression levels of plasma miRNA-499 and miRNA-22 were analyzed by real-time fluorescent quantitative polymerase chain reaction (qRT-PCR). A statistical analysis of clinical data of AMI patients was conducted by 90-day follow-up. RESULTS: Real-time PCR analysis showed that the relative expression level of miRNA-499 increased gradually among the three groups (P < .05). However, the expression of miRNA-22 showed a downward trend (P < .05). According to logistic analysis, the relative levels of miRNA-499 and miRNA-22 were important predictors of AMI. When the miRNA-499 and miRNA-22 levels were 0.377 and 0.946 separately, the diagnostic value of miRNA-499 and miRNA-22 for AMI was 86.00% and 86.00% for sensitivity, and 98.00% and 94.00% for specificity, respectively. In addition, compared to the baseline GRACE scoring system, the combination of miRNA-499, miRNA-22, and GRACE scores had a stronger discriminating power for MACE occurrence, with a sensitivity of 100.00% and a specificity of 79.40%. CONCLUSIONS: The results showed that plasma miRNA-499 and miRNA-22 were more sensitive and specific for the diagnosis of AMI, suggesting that they can be used as potential biomarkers for clinical diagnosis of AMI.


Asunto(s)
MicroARNs/sangre , Infarto del Miocardio/diagnóstico , Adulto , Anciano , Biomarcadores/sangre , Estudios de Casos y Controles , Femenino , Humanos , Masculino , Persona de Mediana Edad , Infarto del Miocardio/sangre , Pronóstico , Sensibilidad y Especificidad
5.
J Cell Physiol ; 234(4): 4799-4811, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30317572

RESUMEN

PURPOSE: The aim of our study was to validate the sway of long noncoding RNA (lncRNA) plasmacytoma variant translocation 1 (PVT1) on the metabolism and growth of bladder cancer cells by microRNA-31 (miR-31)/cyclin-dependent kinase 1 ( CDK1). METHODS: The Gene Expression Omnibus database was used for analyzing the differentially expressed lncRNA and messenger RNA (mRNA) in bladder cancer tissues, with the highly expressed lncRNA PVT1 and mRNA CDK1 screened out. The expression level of PVT1 was detected by quantitative reverse-transcription polymerase chain reaction, cell viability by Cell Counting Kit-8 assay, cell proliferation and scratch by 5-bromo-2'-deoxyuridine assay, cell migration and invasion by transwell assays, the expression level of CDK1 by immunohistochemistry and western blot analysis, transcription factor targeting by dual-luciferase assay, and the effect of PVT1 on bladder cancer growth by nude mice tumor formation experiment. RESULTS: LncRNA PVT1 and mRNA CDK1 had a higher expression in bladder cancer cells than that in neighboring tissues. Activity, proliferation, colony formation, migration, and invasion of bladder cancer cell were noticeably reduced by the PVT1 inhibitor than that of control group. PVT1 and CDK1 have binding sites with miR-31. When miR-31 decreased, CDK1 mRNA and protein levels increased in vivo experiments in nude mice. When PVT1 was downregulated, the tumor size was significantly reduced and tumor proliferation was curbed. Immunohistochemistry showed that the positive rate of CDK1 and Ki-67 decreased and the expression of miR-31 increased after PVT1 was inhibited. CONCLUSIONS: LncRNA PVT1 was overexpressed in bladder cancer cells, and it was downregulated miR-31 to enhance CDK1 expression and facilitate bladder cancer cells proliferation, migration, and invasion.


Asunto(s)
Proteína Quinasa CDC2/metabolismo , Movimiento Celular , Proliferación Celular , MicroARNs/metabolismo , ARN Largo no Codificante/metabolismo , Neoplasias de la Vejiga Urinaria/enzimología , Anciano , Anciano de 80 o más Años , Animales , Proteína Quinasa CDC2/genética , Línea Celular Tumoral , Femenino , Regulación Enzimológica de la Expresión Génica , Regulación Neoplásica de la Expresión Génica , Humanos , Masculino , Ratones Endogámicos BALB C , Ratones Desnudos , MicroARNs/genética , Persona de Mediana Edad , Invasividad Neoplásica , ARN Largo no Codificante/genética , Transducción de Señal , Carga Tumoral , Neoplasias de la Vejiga Urinaria/genética , Neoplasias de la Vejiga Urinaria/patología
6.
Chaos ; 29(12): 123102, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31893644

RESUMEN

Understanding 3D scene geometry is a fundamental research topic in computer vision, including various subproblems, such as depth prediction, visual odometry, optical flow, etc. With the advent of artificial intelligence methods like deep learning, many approaches have emerged to deal with such problems in an end-to-end manner. These pipelines take the 3D understanding task as a nonlinear optimization problem, with the purpose of minimizing the cost function of the whole framework. Here, we present a self-supervised framework for jointly learning the monocular depth and camera's ego-motion from unlabeled, unstructured, and monocular video sequences. We propose a forward-backward consistency constraint on view reconstruction to capture temporal relations across adjacent frames, whose purpose is to explore and make full use of the bidirectional projection information. A simple and practicable improvement on the design of cost function is proposed to enhance the estimated accuracy. Due to the fact that our improvement is a lightweight and general module, it can be integrated into any self-supervised architectures seamlessly, and more accurate results can be obtained. The evaluation on the KITTI dataset demonstrates that our approach is highly efficient and performs better than the existing works in pose estimation, while the results in depth estimation perform comparably with the existing ones.

7.
J Biol Chem ; 291(31): 16138-49, 2016 07 29.
Artículo en Inglés | MEDLINE | ID: mdl-27226560

RESUMEN

Synaptogyrin-2 is a non-neuronal member of the synaptogyrin family involved in synaptic vesicle biogenesis and trafficking. Little is known about the function of synaptogyrin-2. Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease characterized by high fever, thrombocytopenia, and leukocytopenia with high mortality, caused by a novel tick-borne phlebovirus in the family Bunyaviridae. Our previous studies have shown that the viral nonstructural protein NSs forms inclusion bodies (IBs) that are involved in viral immune evasion, as well as viral RNA replication. In this study, we sought to elucidate the mechanism by which NSs formed the IBs, a lipid droplet-based structure confirmed by NSs co-localization with perilipin A and adipose differentiation-related protein (ADRP). Through a high throughput screening, we identified synaptogyrin-2 to be highly up-regulated in response to SFTS bunyavirus (SFTSV) infection and to be a promoter of viral replication. We demonstrated that synaptogyrin-2 interacted with NSs and was translocated into the IBs, which were reconstructed from lipid droplets into large structures in infection. Viral RNA replication decreased, and infectious virus titers were lowered significantly when synaptogyrin-2 was silenced in specific shRNA-expressing cells, which correlated with the reduced number of the large IBs restructured from regular lipid droplets. We hypothesize that synaptogyrin-2 is essential to promoting the formation of the IBs to become virus factories for viral RNA replication through its interaction with NSs. These findings unveil the function of synaptogyrin-2 as an enhancer in viral infection.


Asunto(s)
Infecciones por Bunyaviridae/metabolismo , Phlebovirus/fisiología , Sinaptogirinas/metabolismo , Enfermedades por Picaduras de Garrapatas/metabolismo , Proteínas no Estructurales Virales/metabolismo , Replicación Viral/fisiología , Animales , Infecciones por Bunyaviridae/genética , Chlorocebus aethiops , Células HeLa , Humanos , Cuerpos de Inclusión Viral/genética , Cuerpos de Inclusión Viral/metabolismo , Cuerpos de Inclusión Viral/virología , ARN Viral/biosíntesis , ARN Viral/genética , Sinaptogirinas/genética , Enfermedades por Picaduras de Garrapatas/genética , Células Vero , Proteínas no Estructurales Virales/genética
8.
Exp Cell Res ; 333(2): 220-227, 2015 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-25728006

RESUMEN

BACKGROUND: MicroRNAs (miRNAs) are involved in cardiac developmental and pathological processes, and serum profile is useful for identifying novel miRNAs. METHODS AND RESULTS: Serum samples were collected from unstable angina pectoris (UAP) and subclinical atherosclerotic (AS) patients. Solexa sequencing was used to predict novel miRNAs in 15 control individuals, 15 AS patients and 15 UAP patients. After bioinformatics analysis and filtering out in the newest version of miRbase (version 20.0), three novel miRNAs were validated in 80 control individuals, 80 AS patients and 80 UAP patients by quantitative reverse transcriptase polymerase chain reaction. Two of the three novel microRNAs (N1 and N3) were expressed at the highest levels in the AS group. N1 had an area under curve (AUC) of 0.811 (95% confidence interval 0.743-0.880) for AS. N3 showed a moderate separation with an area under curve (AUC) of 0.748 (95% confidence interval 0.664-0.833) for AS. Combined the two novel microRNAs can significantly distinguish AS from control. CONCLUSIONS: Three novel miRNAs were identified by Solexa sequencing and two of them may be new potential predictors for arthrosclerosis.


Asunto(s)
Angina Inestable/sangre , Aterosclerosis/sangre , MicroARNs/sangre , Secuencia de Bases , Biomarcadores/sangre , Estudios de Casos y Controles , Humanos , Datos de Secuencia Molecular , Curva ROC
9.
BMC Cardiovasc Disord ; 14: 181, 2014 Dec 09.
Artículo en Inglés | MEDLINE | ID: mdl-25491329

RESUMEN

BACKGROUND: It is indicated that non-HDL cholesterol and lipid ratios, including total/HDL cholesterol and LDL/HDL cholesterol ratios, are risk indicators with greater predictive value for coronary atherosclerotic progression or regression compared with conventional lipid profile. However, there have been few reports about the correlation between serum lipid profile with carotid intima-media thickness (IMT) and plaque in Chinese general people. METHODS: We examined 402 subjects without apparent diseases in a cross-sectional study (mean age 50.16 years; 36.07% female). Demographics, anthropometrics, and laboratory data were collected. The presence of carotid plaque and intima-media thickness were evaluated by ultrasonography. RESULTS: Univariate correlations showed carotid IMT was correlated with LDL-C (r = 0.137, p = 0.009), non-LDL-C levels (r = 0.140, p = 0.008) and LDL-C/HDL-C ratio (r = 0.169, p = 0.001). After adjustment for potential covariates, LDL-C/HDL-C ratio (ß = 0.132, p < 0.001) were independent variables that interacted on carotid IMT. Other risk factors including age and systolic blood pressure were independently associated with carotid IMT. LDL-C levels, non-HDL-C levels, TC/HDL-C and LDL-C/HDL-C ratios were significantly higher, but HDL-C levels were significantly lower in subjects with carotid plaque than those without it. The subsequent multiple logistic regression analysis showed that LDL-C (OR; 1.325, 95% CI; 1.046-1.821, p = 0.033) and HDL-C levels (OR; 0.093, 95% CI; 0.038-0.227, p < 0.001) were significantly associated with the presence of carotid plaque after adjustment of age. Furthermore, LDL-C combined with HDL-C levels showed the highest area under the curve (0.788, 95% CI; 0.740-0.837, p < 0.001). CONCLUSIONS: Serum LDL-C/HDL-C ratio represents as an independent index associated with increased carotid IMT and LDL-C combined with HDL-C levels may be useful markers for predicting the presence of carotid plaque in the Chinese general population.


Asunto(s)
Arterias Carótidas/patología , Grosor Intima-Media Carotídeo , Lípidos/sangre , Placa Aterosclerótica/sangre , Placa Aterosclerótica/patología , Factores de Edad , Presión Sanguínea , Arterias Carótidas/diagnóstico por imagen , Colesterol/sangre , HDL-Colesterol/sangre , LDL-Colesterol/sangre , Estudios Transversales , Femenino , Hemoglobina Glucada/metabolismo , Humanos , Masculino , Persona de Mediana Edad , Triglicéridos/sangre
10.
Coron Artery Dis ; 35(3): 221-230, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38299258

RESUMEN

BACKGROUND: Evidence about the association between albumin combined with neutrophil-to-lymphocyte ratio score (ANS) and survival outcomes in patients with acute coronary syndrome (ACS) undergoing percutaneous coronary intervention (PCI) is rare. This study aimed to evaluate the prognostic value of ANS in patients with ACS undergoing PCI by propensity score matching (PSM) analysis. PATIENTS AND METHODS: Patients with ACS undergoing PCI were consecutively enrolled in this prospective cohort study from January 2016 to December 2018. The albumin and neutrophil-to-lymphocyte ratio cutoff values for predicting major adverse cardiovascular events (MACEs) were calculated using receiver operating characteristic curves. Survival analysis was performed using Kaplan-Meier estimates, the Cox proportional hazard regression models and PSM. The study endpoint was the occurrence of a MACE, which included all-cause mortality and rehospitalization for severe heart failure during follow-up. RESULTS: Overall, 1549 patients with adequate specimens were identified and assigned into different groups for comparison. Before and after PSM, the Kaplan-Meier curves showed that a higher ANS value was associated with a higher risk of MACEs (all P  < 0.001). The multivariate Cox proportional hazard regression model showed that the ANS (per 1 score increase) [hazard ratio (HR), 2.016; 95% confidence interval (CI), 1.329-3.057; P  = 0.001 vs. HR, 2.166; 95% CI, 1.344-3.492; P  = 0.002] was an independent predictor for MACEs. CONCLUSION: This study tentatively confirms that ANS may be a valuable clinical indicator to identify high-risk ACS patients after PCI. More high-quality prospective studies are needed in the future.


Asunto(s)
Síndrome Coronario Agudo , Infarto del Miocardio , Intervención Coronaria Percutánea , Humanos , Infarto del Miocardio/epidemiología , Estudios Prospectivos , Intervención Coronaria Percutánea/efectos adversos , Neutrófilos , Albúminas , Factores de Riesgo , Estudios Retrospectivos
11.
Medicine (Baltimore) ; 103(9): e37279, 2024 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-38428899

RESUMEN

Myocardial ischemia-reperfusion injury (MIRI) is a severe damage inflicted on the ischemic myocardium when blood flow is restored, and it commonly occurs in a wide range of cardiovascular diseases. Presently, no effective clinical treatment exists for MIRI. Accumulating evidence indicates that insulin-like growth factor-1 (IGF-1) plays a role in the intricate chain of cardiovascular events, in addition to its well-recognized growth-promoting and metabolic effects. IGF-1, a member of the insulin family, exhibits a broad spectrum of protective effects against ischemia/reperfusion injury in various tissues, especially the myocardium. In particular, earlier research has demonstrated that IGF-1 reduces cellular oxidative stress, improves mitochondrial function, interacts with noncoding RNAs, and activates cardiac downstream protective genes and protective signaling channels. This review aimed to summarize the role of IGF-1 in MIRI and elucidate its related mechanisms of action. In addition, IGF-1-related interventions for MIRI, such as ischemic preconditioning and post-conditioning, were discussed. The purpose of this review was to provide evidence supporting the activation of IGF-1 in MIRI and advocate its use as a therapeutic target.


Asunto(s)
Factor I del Crecimiento Similar a la Insulina , Daño por Reperfusión Miocárdica , Humanos , Corazón , Factor I del Crecimiento Similar a la Insulina/metabolismo , Péptidos Similares a la Insulina , Daño por Reperfusión Miocárdica/metabolismo , Miocardio/metabolismo
12.
Cancer Lett ; 588: 216746, 2024 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-38387756

RESUMEN

Helicobacter pylori (H. pylori) infection is considered to be an important factor in gastric cancer (GC). Long noncoding RNA (lncRNA) and m6A modification are involved in the occurrence and development of GC, but the role of lncRNA m6A modification in the development of GC mediated by H. pylori is still unclear. Here, we found that H. pylori infection downregulated the expression of lnc-PLCB1 through METTL14-mediated m6A modification and IRF2-mediated transcriptional regulation. Overexpression of lnc-PLCB1 inhibited the proliferation and migration of GC cells, while downregulation of lnc-PLCB1 promoted the proliferation and migration ability of GC cells. In addition, clinical analysis showed that lnc-PLCB1 is lower in GC tissues than in normal tissues. Further study found that lnc-PLCB1 reduced the protein stability of its binding protein DEAD-box helicase 21 (DDX21) and then downregulated the expression of CCND1 and Slug, thereby playing tumour suppressing role in the occurrence and development of GC. In conclusion, the METTL14/lnc-PLCB1/DDX21 axis plays an important role in H. pylori-mediated GC, and lnc-PLCB1 can be used as a new target for GC treatment.


Asunto(s)
Adenina , Infecciones por Helicobacter , Helicobacter pylori , ARN Largo no Codificante , Neoplasias Gástricas , Humanos , Helicobacter pylori/metabolismo , ARN Largo no Codificante/genética , ARN Largo no Codificante/metabolismo , Neoplasias Gástricas/patología , Regulación hacia Abajo , Infecciones por Helicobacter/complicaciones , Infecciones por Helicobacter/genética , Proliferación Celular , ARN Helicasas DEAD-box/genética , ARN Helicasas DEAD-box/metabolismo , Fosfolipasa C beta/genética , Fosfolipasa C beta/metabolismo , Metiltransferasas/genética , Metiltransferasas/metabolismo
13.
Artículo en Inglés | MEDLINE | ID: mdl-37410648

RESUMEN

Monocular depth estimation is one of the fundamental tasks in environmental perception and has achieved tremendous progress by virtue of deep learning. However, the performance of trained models tends to degrade or deteriorate when employed on other new datasets due to the gap between different datasets. Though some methods utilize domain adaptation technologies to jointly train different domains and narrow the gap between them, the trained models cannot generalize to new domains that are not involved in training. To boost the transferability of self-supervised monocular depth estimation models and mitigate the issue of meta-overfitting, we train the model in the pipeline of meta-learning and propose an adversarial depth estimation task. We adopt model-agnostic meta-learning (MAML) to obtain universal initial parameters for further adaptation and train the network in an adversarial manner to extract domain-invariant representations for easing meta-overfitting. In addition, we propose a constraint to impose upon cross-task depth consistency to compel the depth estimation to be identical in different adversarial tasks, which improves the performance of our method and smoothens the training process. Experiments on four new datasets demonstrate that our method adapts quite fast to new domains. Our method trained after 0.5 epoch achieves comparable results with the state-of-the-art methods trained at least 20 epochs.

14.
IEEE/ACM Trans Comput Biol Bioinform ; 20(5): 3044-3055, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37028366

RESUMEN

In recent years, artificial intelligence has played an important role on accelerating the whole process of drug discovery. Various of molecular representation schemes of different modals (e.g., textual sequence or graph) are developed. By digitally encoding them, different chemical information can be learned through corresponding network structures. Molecular graphs and Simplified Molecular Input Line Entry System (SMILES) are popular means for molecular representation learning in current. Previous works have done attempts by combining both of them to solve the problem of specific information loss in single-modal representation on various tasks. To further fusing such multi-modal imformation, the correspondence between learned chemical feature from different representation should be considered. To realize this, we propose a novel framework of molecular joint representation learning via Multi-Modal information of SMILES and molecular Graphs, called MMSG. We improve the self-attention mechanism by introducing bond-level graph representation as attention bias in Transformer to reinforce feature correspondence between multi-modal information. We further propose a Bidirectional Message Communication Graph Neural Network (BMC GNN) to strengthen the information flow aggregated from graphs for further combination. Numerous experiments on public property prediction datasets have demonstrated the effectiveness of our model.


Asunto(s)
Inteligencia Artificial , Descubrimiento de Drogas , Redes Neurales de la Computación
15.
J Inflamm Res ; 16: 3631-3641, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37641701

RESUMEN

Purpose: The decreased advanced lung cancer inflammation index (ALI), defined as body mass index (BMI) * albumin (Alb)/neutrophil-to-lymphocyte ratio (NLR), is an independent prognostic risk factor for overall survival in gastric, lung, and colorectal cancers. This study aimed to investigate the value of ALI in predicting the risk of major adverse cardiovascular events (MACEs) in patients with acute coronary syndrome (ACS). Patients and Methods: A total of 1624 patients with ACS undergoing percutaneous coronary intervention (PCI) were consecutively enrolled between January 2016 and December 2018. Follow-up data were collected at 1, 3, 6, and 12 months and annually thereafter. The primary endpoints were MACEs. All endpoints were defined as all-cause mortality, recurrent angina pectoris, restenosis/intra stent thrombosis, stroke, heart failure, and all-cause bleeding. Results: The MACEs group and non-MACEs group showed significant differences in patients with age >65 years (28 [50.0%] vs 319 [23.7%]), history of heart failure (16 [28.6%] vs 127 [9.4%]), history of ischemic stroke (14 [25.0%] vs 186 [13.8%]), history of cardiogenic shock (6 [10.71%] vs 16 [1.19%]), left ventricular ejection fraction <40% (8 [14.29%] vs 33 [2.46%]), and ALI <343.96 (44 [78.65%] vs 680 [50.60%]) (all p<0.001). The optimal cut-off value for ALI was 334.96. The area under the curve (AUC) of the 1-, 2-, 3-, and 5-year was 0.560, 0.577, 0.665, and 0.749, respectively. The survival rate was significantly lower in the low ALI group than in the high ALI group (log-rank p<0.001). Low ALI was an independent risk factor for the long-term prognosis of patients with ACS after PCI, univariate HR: 3.671, 95% CI: 1.938-6.953, p<0.001; multivariate HR: 3.009, 95% CI: 1.57-5.769, p=0.001. Conclusion: ALI score less than 334.96 is an independent prognostic risk factor for patients with ACS undergoing PCI and may be a novel marker for clinical practice.

16.
IEEE Trans Neural Netw Learn Syst ; 34(12): 9604-9624, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-35482692

RESUMEN

Autonomous systems possess the features of inferring their own state, understanding their surroundings, and performing autonomous navigation. With the applications of learning systems, like deep learning and reinforcement learning, the visual-based self-state estimation, environment perception, and navigation capabilities of autonomous systems have been efficiently addressed, and many new learning-based algorithms have surfaced with respect to autonomous visual perception and navigation. In this review, we focus on the applications of learning-based monocular approaches in ego-motion perception, environment perception, and navigation in autonomous systems, which is different from previous reviews that discussed traditional methods. First, we delineate the shortcomings of existing classical visual simultaneous localization and mapping (vSLAM) solutions, which demonstrate the necessity to integrate deep learning techniques. Second, we review the visual-based environmental perception and understanding methods based on deep learning, including deep learning-based monocular depth estimation, monocular ego-motion prediction, image enhancement, object detection, semantic segmentation, and their combinations with traditional vSLAM frameworks. Then, we focus on the visual navigation based on learning systems, mainly including reinforcement learning and deep reinforcement learning. Finally, we examine several challenges and promising directions discussed and concluded in related research of learning systems in the era of computer science and robotics.

17.
Front Psychol ; 13: 986301, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36118451

RESUMEN

Many researchers have acknowledged the role of metacognition in facilitating learning to write in English as a foreign language (EFL). Although research on metacognition has explored learners' metacognitive knowledge and metacognitive strategies in the field of EFL writing, little is known about the nature of learners' metacognitive experiences in EFL writing. To fill such an important gap, this study was designed to assess EFL learners' metacognitive experiences before, during, and after writing. Data were collected from a total of 760 undergraduates through three self-report questionnaires and a writing task. Results from quantitative analyses showed four subcategories of EFL learners' metacognitive experiences in writing: metacognitive feeling, metacognitive judgments/estimates, online task-specific metacognitive knowledge, and online task-specific metacognitive strategies. Based on the empirical evidence, we propose a model of metacognitive experiences in EFL writing. Theoretical, methodological, and pedagogical implications are discussed.

18.
Front Psychol ; 13: 1070618, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-37435098

RESUMEN

Peer assessment is a common pedagogical practice for evaluating students' writing in college English classrooms. However, in-depth research on the learning outcomes after peer assessment is scarce and inconsistent; how peer feedback is used has not been fully explored either. This study compared peer feedback to teacher feedback and explored the different features of feedback and its impact on draft revision. Two specific research questions were answered in this study: (1) In which aspects can peer feedback supplement teacher feedback in improving the linguistic features in writing? (2) What are the differences in features of peer feedback versus teacher feedback? And how do they connect to feedback take-in? Two writing tasks were assigned to 94 students. One received teacher feedback and the other peer feedback. Pre-feedback and post-feedback writings in both tasks (4 sets in total) were scored and human ratings were adjusted using Many-Facet Rasch modeling to control for differences in leniency. Drawing on three natural language processing (NLP) tools, this study also assessed writing qualities by comparing 22 selected indices related to the scoring rubrics for human raters, which involve three dimensions: cohesion, lexical quality and syntactic complexity. Peer and teacher feedback was then coded based on features of feedback to explore their influence on draft revision. The results showed that both peer and teacher feedback had positive effects on rating scores. We confirmed peer feedback as an effective classroom approach to improve writing, though limited compared to teacher feedback as reflected in the indices. In terms of feedback features, students often stopped at identifying the language problems, while the teacher provided more explanations, solutions or suggestions regarding the problems identified. Implications for peer feedback research and implementation of peer assessment activities are provided.

19.
Cell Cycle ; 21(9): 908-920, 2022 05.
Artículo en Inglés | MEDLINE | ID: mdl-35112997

RESUMEN

This study aimed to explore the role and potential mechanism of the long non-coding (lncRNA) MBNL1-AS1 in human breast cancer. We included 80 patients with breast cancer in this study. Breast cancer cell lines, including MCF7, SKBR3, MDA-MB-231 and MDA-MB-415, and the normal human breast cell line MCF10A were used in this study. MBNL1-AS1, miR-889-3p mimics, si-Krüppel-like factor 9 (KLF9) or their controls were transfected in the cells. Quantitative reverse transcription polymerase chain reaction (qRT-PCR), Western blotting and immunohistochemistry assay were performed to detect the expression of MBNL1-AS1, miR-889-3p and KLF9. Cell proliferation, invasion and migration were detected. Luciferase reporter gene and pull-down assay were performed to verify the target relationship among MBNL1-AS1, miR-889-3p and KLF9. Glycolysis was also detected after transfection. The expression of the lncRNA MBNL1-AS1 was low in the breast cancer tissues and cells. Lower expression levels of the lncRNA MBNL1-AS1 were associated with poor prognosis of breast cancer. Overexpression of the lncRNA MBNL1-AS1 decreased proliferation, invasion, migration and glycolysis of breast cancer cells. The lncRNA MBNL1-AS1 could interact with miR-889-3p, and KLF9 was the downstream target of miR-889-3p. Moreover, miR-889-3p was negatively correlated with KLF9 and lncRNA MBNL1-AS1. Both miR-889-3p and si-KLF9 could reverse the overexpression of lncRNA MBNL1-AS1 in breast cancer development. The lncRNA MBNL1-AS1 decreased proliferation, invasion, migration and glycolysis of breast cancer via the miR-889-3p/KLF9 axis, which might be a potential biomarker for the diagnosis of breast cancer.


Asunto(s)
Neoplasias de la Mama , MicroARNs , ARN Largo no Codificante , Neoplasias de la Mama/genética , Línea Celular Tumoral , Movimiento Celular/genética , Proliferación Celular/genética , Femenino , Regulación Neoplásica de la Expresión Génica/genética , Humanos , Factores de Transcripción de Tipo Kruppel/genética , Factores de Transcripción de Tipo Kruppel/metabolismo , MicroARNs/genética , MicroARNs/metabolismo , ARN Largo no Codificante/genética , ARN Largo no Codificante/metabolismo , Proteínas de Unión al ARN/genética , Proteínas de Unión al ARN/metabolismo
20.
IEEE Trans Neural Netw Learn Syst ; 33(5): 2023-2033, 2022 May.
Artículo en Inglés | MEDLINE | ID: mdl-34347607

RESUMEN

Deep learning-based methods mymargin have achieved remarkable performance in 3-D sensing since they perceive environments in a biologically inspired manner. Nevertheless, the existing approaches trained by monocular sequences are still prone to fail in dynamic environments. In this work, we mitigate the negative influence of dynamic environments on the joint estimation of depth and visual odometry (VO) through hybrid masks. Since both the VO estimation and view reconstruction process in the joint estimation framework is vulnerable to dynamic environments, we propose the cover mask and the filter mask to alleviate the adverse effects, respectively. As the depth and VO estimation are tightly coupled during training, the improved VO estimation promotes depth estimation as well. Besides, a depth-pose consistency loss is proposed to overcome the scale inconsistency between different training samples of monocular sequences. Experimental results show that both our depth prediction and globally consistent VO estimation are state of the art when evaluated on the KITTI benchmark. We evaluate our depth prediction model on the Make3D dataset to prove the transferability of our method as well.

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