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1.
Nature ; 577(7788): 39-41, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31894143

RESUMEN

Galaxy clusters are the most massive virialized structures in the Universe and are formed through the gravitational accretion of matter over cosmic time1. The discovery2 of an evolved galaxy cluster at redshift z = 2, corresponding to a look-back time of 10.4 billion years, provides an opportunity to study its properties. The galaxy cluster XLSSC 122 was originally detected as a faint, extended X-ray source in the XMM Large Scale Structure survey and was revealed to be coincident with a compact over-density of galaxies2 with photometric redshifts of 1.9 ± 0.2. Subsequent observations3 at millimetre wavelengths detected a Sunyaev-Zel'dovich decrement along the line of sight to XLSSC 122, thus confirming the existence of hot intracluster gas, while deep imaging spectroscopy from the European Space Agency's X-ray Multi-Mirror Mission (XMM-Newton) revealed4 an extended, X-ray-bright gaseous atmosphere with a virial temperature of 60 million Kelvin, enriched with metals to the same extent as are local clusters. Here we report optical spectroscopic observations of XLSSC 122 and identify 37 member galaxies at a mean redshift of 1.98, corresponding to a look-back time of 10.4 billion years. We use photometry to determine a mean, dust-free stellar age of 2.98 billion years, indicating that star formation commenced in these galaxies at a mean redshift of 12, when the Universe was only 370 million years old. The full range of inferred formation redshifts, including the effects of dust, covers the interval from 7 to 13. These observations confirm that XLSSC 122 is a remarkably mature galaxy cluster with both evolved stellar populations in the member galaxies and a hot, metal-rich gas composing the intracluster medium.

2.
J Chem Phys ; 160(2)2024 Jan 14.
Artículo en Inglés | MEDLINE | ID: mdl-38193556

RESUMEN

The phase behavior of binary blends of AB diblock copolymers of compositions f and 1 - f is examined using field-theoretic simulations. Highly asymmetric compositions (i.e., f ≈ 0) behave like homopolymer blends macrophase separating into coexisting A- and B-rich phases as the segregation is increased, whereas more symmetric diblocks (i.e., f ≈ 0.5) microphase separate into an ordered lamellar phase. In self-consistent field theory, these behaviors are separated by a Lifshitz critical point at f = 0.2113. However, its lower critical dimension is believed to be four, which implies that the Lifshitz point should be destroyed by fluctuations. Consistent with this, it is found to transform into a tricritical point. Furthermore, the highly swollen lamellar phase near the mean-field Lifshitz point disorders into a bicontinuous microemulsion (BµE), consisting of large interpenetrating A- and B-rich microdomains. BµE has been previously reported in ternary blends of AB diblock copolymer with its parent A- and B-type homopolymers, but in that system the homopolymers have a tendency to macrophase separate. Our alternative system for creating BµE is free of this macrophase separation.

3.
J Chem Phys ; 158(4): 044904, 2023 Jan 28.
Artículo en Inglés | MEDLINE | ID: mdl-36725530

RESUMEN

This study examines the ultraviolet (UV) divergence in field-theoretic simulations (FTSs) of block copolymer melts, which causes an unphysical dependence on the grid resolution, Δ, used to represent the fields. Our FTSs use the discrete Gaussian-chain model and a partial saddle-point approximation to enforce incompressibility. Previous work has demonstrated that the UV divergence can be accounted for by defining an effective interaction parameter, χ=z∞χb+c2χb 2+c3χb 3+⋯, in terms of the bare interaction parameter, χb, used in the FTSs, where the coefficients of the expansion are determined by a Morse calibration. However, the need to use different grid resolutions for different ordered phases generally restricts the calibration to the linear approximation, χ ≈ z∞χb, and prevents the calculation of order-order transitions. Here, we resolve these two issues by showing how the nonlinear calibration can be translated between different grids and how the UV divergence can be removed from free energy calculations. By doing so, we confirm previous observations from particle-based simulations. In particular, we show that the free energy closely matches self-consistent field theory (SCFT) predictions, even in the region where fluctuations disorder the periodic morphologies, and similarly, the periods of the ordered phases match SCFT predictions, provided the SCFT is evaluated with the nonlinear χ.

4.
Philos Trans A Math Phys Eng Sci ; 377(2156): 20190099, 2019 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-31474204

RESUMEN

The Hashin-Shtrikman formalism for the static response of a composite is first summarized, in a form applicable to anisotropic media and arbitrary two-point correlations. Its extension to dynamic response is then explained and in particular the extra coupling, for stress with velocity as well as strain, and momentum density with strain as well as velocity that inevitably follows, is highlighted. The more recent dynamical formulations which incorporate extra flexibility through the use of a weighted mean displacement also receive mention. The article is concluded with an explicit analysis of a simple model random composite and some lessons are drawn from the solution, which exposes at least one clear gap in existing knowledge and requires further research. This article is part of the theme issue 'Modelling of dynamic phenomena and localization in structured media (part 1)'.

5.
J Chem Phys ; 150(20): 204906, 2019 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-31153196

RESUMEN

The Morse calibration is applied to a lattice model designed for efficient simulations of two-component polymer melts of high molecular weight. The model allows multiple occupancy per site, which results in high invariant polymerization indices, and interactions are limited to monomers within the same site, which enhances the computational speed. The calibration maps the interaction parameter of the lattice model, α, onto the Flory-Huggins χ parameter of the standard Gaussian-chain model, by matching the disordered-state structure function, S(k), of symmetric diblock copolymers to renormalized one-loop predictions. The quantitative accuracy of the calibration is tested by comparing the order-disorder transition of symmetric diblock copolymer melts to the universal prediction obtained from previous simulations. The model is then used to confirm the universality of fluctuation corrections to the critical point of symmetric binary homopolymer blends.

6.
Ann Oncol ; 29(10): 2061-2067, 2018 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-30412224

RESUMEN

Background: Gene expression-based profiling of colorectal cancer (CRC) can be used to identify four molecularly homogeneous consensus molecular subtype (CMS) groups with unique biologic features. However, its applicability to colorectal premalignant lesions remains unknown. Patients and methods: We assembled the largest transcriptomic premalignancy dataset by integrating different public and proprietary cohorts of adenomatous and serrated polyps from sporadic (N = 311) and hereditary (N = 78) patient populations and carried out a comprehensive analysis of carcinogenesis pathways using the CMS random forest (RF) classifier. Results: Overall, transcriptomic subtyping of sporadic and hereditary polyps revealed CMS2 and CMS1 subgroups as the predominant molecular subtypes in premalignancy. Pathway enrichment analysis showed that adenomatous polyps from sporadic or hereditary cases (including Lynch syndrome) displayed a CMS2-like phenotype with WNT and MYC activation, whereas hyperplastic and serrated polyps with CMS1-like phenotype harbored prominent immune activation. Rare adenomas with CMS4-like phenotype showed significant enrichment for stromal signatures along with transforming growth factor-ß activation. There was a strong association of CMS1-like polyps with serrated pathology, right-sided anatomic location and BRAF mutations. Conclusions: Based on our observations made in premalignancy, we propose a model of pathway activation associated with CMS classification in colorectal carcinogenesis. Specifically, while adenomatous polyps are largely CMS2, most hyperplastic and serrated polyps are CMS1 and may transition into other CMS groups during evolution into carcinomas. Our findings shed light on the transcriptional landscape of premalignant colonic polyps and may help guide the development of future biomarkers or preventive treatments for CRC.


Asunto(s)
Adenoma/diagnóstico , Biomarcadores de Tumor/genética , Pólipos del Colon/diagnóstico , Neoplasias Colorrectales/clasificación , Neoplasias Colorrectales/diagnóstico , Mutación , Lesiones Precancerosas/diagnóstico , Adenoma/genética , Pólipos del Colon/genética , Neoplasias Colorrectales/genética , Femenino , Estudios de Seguimiento , Perfilación de la Expresión Génica , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Masculino , Persona de Mediana Edad , Estadificación de Neoplasias , Fenotipo , Lesiones Precancerosas/genética , Valor Predictivo de las Pruebas , Pronóstico , Transcriptoma
7.
Mol Pharmacol ; 87(2): 251-62, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25468882

RESUMEN

Chemokines and chemokine receptors are key modulators in inflammatory diseases and malignancies. Here, we describe the identification and pharmacologic characterization of nanobodies selectively blocking CXCR2, the most promiscuous of all chemokine receptors. Two classes of selective monovalent nanobodies were identified, and detailed epitope mapping showed that these bind to distinct, nonoverlapping epitopes on the CXCR2 receptor. The N-terminal-binding or class 1 monovalent nanobodies possessed potencies in the single-digit nanomolar range but lacked complete efficacy at high agonist concentrations. In contrast, the extracellular loop-binding or class 2 monovalent nanobodies were of lower potency but were more efficacious and competitively inhibited the CXCR2-mediated functional response in both recombinant and neutrophil in vitro assays. In addition to blocking CXCR2 signaling mediated by CXCL1 (growth-related oncogene α) and CXCL8 (interleukin-8), both classes of nanobodies displayed inverse agonist behavior. Bivalent and biparatopic nanobodies were generated, respectively combining nanobodies from the same or different classes via glycine/serine linkers. Interestingly, receptor mutation and competition studies demonstrated that the biparatopic nanobodies were able to avidly bind epitopes within one or across two CXCR2 receptor molecules. Most importantly, the biparatopic nanobodies were superior over their monovalent and bivalent counterparts in terms of potency and efficacy.


Asunto(s)
Receptores de Interleucina-8B/antagonistas & inhibidores , Receptores de Interleucina-8B/metabolismo , Transducción de Señal/fisiología , Anticuerpos de Dominio Único/metabolismo , Anticuerpos de Dominio Único/farmacología , Secuencia de Aminoácidos , Animales , Sitios de Unión/fisiología , Células CHO , Camélidos del Nuevo Mundo , Cricetinae , Cricetulus , Humanos , Datos de Secuencia Molecular , Receptores de Interleucina-8B/genética , Transducción de Señal/efectos de los fármacos , Anticuerpos de Dominio Único/genética
8.
J Hum Nutr Diet ; 28(1): 72-84, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24527991

RESUMEN

BACKGROUND: Accurate assessment of energy expenditure and anthropometry in older people is important for targeted nutritional support. The present study aimed to compare measured and calculated resting metabolic rate (m-RMR and c-RMR) and measured, calculated and estimated weight and height in older people aged ≥70 years. METHODS: Participants were healthy older people aged ≥70 years. Indirect calorimetry using a ventilated hood calorimeter was performed for 30 min on fasted participants, and was compared with c-RMR, as calculated using six commonly used equations. Measured, calculated and estimated height and weight were compared. RESULTS: Subjects comprised 14 males and 20 females and mean (SD) m-RMR was 5243 (845) kJ day(-1) [1253 (202) kcal day(-1) ]. The Mifflin St-Jeor equation was the most consistently accurate, with the smallest mean difference between m-RMR and c-RMR of 58 (553) kJ day(-1) [14 (132) kcal day(-1) ] and c-RMR was within 10% of m-RMR in the greatest number of participants (n = 24; 70%). The Schofield equation was among the least accurate in this age group. In older males, self-reported height and weight were accurate, whereas, in females or those unable to self-report height, ulna length was the most accurate alternative to measured height. CONCLUSIONS: Current equations used to calculate RMR in older people have inaccuracies, although the Mifflin St-Jeor equation was most accurate. Future studies should investigate the validity, reliability, cost and practicality of using fat free mass as an item in novel equations to calculate RMR in this age group. Self-reported height and weight in males, and height calculated from ulna length in females, were the most accurate alternatives to measured values in the present study.


Asunto(s)
Metabolismo Basal , Peso Corporal , Anciano , Anciano de 80 o más Años , Estatura , Índice de Masa Corporal , Calorimetría Indirecta/métodos , Metabolismo Energético , Femenino , Humanos , Masculino , Valor Predictivo de las Pruebas , Reproducibilidad de los Resultados , Autoinforme
9.
Heredity (Edinb) ; 112(5): 562-8, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24398885

RESUMEN

Changes in chromosome number and structure are important contributors to adaptation, speciation and macroevolution. In flowering plants, polyploidy and subsequent reductions in chromosome number by fusion are major sources of chromosomal evolution, but chromosome number increase by fission has been relatively unexplored. Here, we use comparative linkage mapping with gene-based markers to reconstruct chromosomal synteny within the model flowering plant genus Mimulus (monkeyflowers). Two sections of the genus with haploid numbers ≥ 14 have been inferred to be relatively recent polyploids because they are phylogenetically nested within numerous taxa with low base numbers (n=8-10). We combined multiple data sets to build integrated genetic maps of the M. guttatus species complex (section Simiolus, n=14) and the M. lewisii group (section Erythranthe; n=8), and then aligned the two integrated maps using >100 shared markers. We observed strong segmental synteny between M. lewisii and M. guttatus maps, with essentially 1-to-1 correspondence across each of 16 chromosomal blocks. Assuming that the M. lewisii (and widespread) base number of 8 is ancestral, reconstruction of 14 M. guttatus chromosomes requires at least eight fission events (likely shared by Simiolus and sister section Paradanthus (n=16)), plus two fusion events. This apparent burst of fission in the yellow monkeyflower lineages raises new questions about mechanisms and consequences of chromosomal fission in plants. Our comparative maps also provide insight into the origins of a chromosome exhibiting centromere-associated female meiotic drive and create a framework for transferring M. guttatus genome resources across the entire genus.


Asunto(s)
Aneuploidia , Mapeo Cromosómico/métodos , Cromosomas de las Plantas/genética , Mimulus/genética , Poliploidía , Centrómero/genética , Evolución Molecular , Haploidia , Mimulus/clasificación , Especificidad de la Especie , Sintenía
10.
J Community Health ; 39(4): 712-8, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24390740

RESUMEN

China is experiencing one of the fastest growing human immunodeficiency virus (HIV) epidemics in the world. Condom use is consistently low among Chinese college students. The purpose of this study was to identify the predictors that determine the intention to use condoms among Chinese college students applying the theory of planned behavior (TPB). A non-probability convenience sample of 433 participants was drawn from three universities in Central, Eastern, and Southwestern China, respectively. An anonymous written questionnaire was self-administered. Data were collected and analyzed descriptively and statistically using Predictive Analytical Software 19.0. Multiple linear regression was performed to identify the predictors among 402 participants with non-missing data. Eighteen percent (78/433) of the participants reported being sexually active in the past 6 months. The percentage of times these individuals reported using condoms during intercourse was 38.19%. Intention to use condoms was statistically significantly (R(2) = 50.4%) predicted by attitudes (ß = 0.213), subjective norms (ß = 0.259), and perceived behavior control (PBC) (ß = 0.332). All predictors were statistically significant at the 0.001 level (p < 0.001). PBC was the strongest predictor of intention to use condoms. The study findings indicated that the TPB could be used as a framework to determine the predictors of intention to use condoms among the Chinese college students. It is recommended that the HIV education programs should increase the intention to use condoms through promoting positive attitudes, subjective norms and PBC of condom use in Chinese college students.


Asunto(s)
Condones/estadística & datos numéricos , Infecciones por VIH/prevención & control , Conocimientos, Actitudes y Práctica en Salud , Conducta Sexual/estadística & datos numéricos , Estudiantes/psicología , Adolescente , Adulto , China/epidemiología , Femenino , Predicción , Infecciones por VIH/epidemiología , Infecciones por VIH/transmisión , Humanos , Intención , Modelos Lineales , Masculino , Estado Civil , Normas Sociales , Estudiantes/estadística & datos numéricos , Encuestas y Cuestionarios , Universidades , Adulto Joven
11.
Appl Neuropsychol Adult ; : 1-5, 2024 Aug 04.
Artículo en Inglés | MEDLINE | ID: mdl-39099003

RESUMEN

The assessment of performance validity is an important consideration to the interpretation of neuropsychological data. However, commonly used performance validity tests such as the Test of Memory Malingering (TOMM) and Word Memory Test (WMT) have lengthy administration times (20-30 minutes). Alternatively, utilizing a screener of performance validity (e.g., the TOMM T1 or TOMMe10) has proven to be an effective method of assessing performance validity while conserving time. The present study investigates the use of the WMT Immediate Recognition (IR) Trial scores as a screening measure for performance validity using an archival mTBI polytrauma sample (n = 48). Results show that the WMT IR demonstrates a high degree of accuracy in predicting WMT Delayed Recognition (DR) Trial performance across a range of base rates suggesting that the WMT IR is a useful screening measure for noncredible performance. Clinical implications and selection of optimal cutoff are discussed.

12.
Front Epidemiol ; 4: 1365090, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39081839

RESUMEN

Introduction: Although Coronavirus disease 2019 (COVID-19) vaccination is critical to control its spread, vaccine hesitancy varies significantly among the United States population; moreover, some vaccine recipients experienced various adverse effects. We aim to assess the impact of COVID-19 vaccine hesitancy in a university-affiliated community, the factors affecting participants' decisions, and their adverse effects. Methods: A pre-vaccination online Institutional Review Board IRB-approved survey was emailed in Nov/Dec 2020, 2 months before the implementation of state-policy protocols for COVID-19 vaccination. A post-vaccination survey was emailed in May/June 2021, two months after protocol execution. A third follow-up survey was sent in Nov/Dec 2021, and a fourth was sent in June/July 2022. The study population included three groups of adult participants: university students, faculty, and staff-(MS), university health system patients-(MP), and Cancer Center patients-(MCP). The study was designed as a longitudinal cohort study. Statistical analyses were performed using SPSS. Results: With a combined response rate of 26% (40,578/157,292) among the four surveys, 15,361 participants completed the first survey (MS = 4,983, MP = 9,551, and MCP = 827). 2/3 of participants (63.5%) were willing to get vaccinated, with a significant difference in acceptance among groups, MS:56.6%, MP:66.2%, and MCP:71.6% (p < 0.05). Vaccine acceptance rates reached 89% in the second survey after the vaccine's approval, with a lower acceptance rate of MS:84.6% than with MP:90.74% and MCP:92.47% participants (p < 0.05). Safety and effectiveness concerns were the main factors affecting participants' decisions in all the first three surveys; however, participants reported these concerns decreased between pre-vaccination, post-vaccination, and follow-up surveys with 87%, 56%, and 46%, respectively(p < 0.05). More than two-thirds of the participants (70%) reported having either minor/moderate symptoms (61.6%) or major symptoms (8.6%) after getting some of the vaccine doses (p < 0.05). Conclusion: The hesitance of COVID-19 vaccination was associated with concerns regarding its safety and efficacy. Vaccine acceptance rose higher than expected after protocol execution, likely due to continuous education, whereas safety and efficacy remain factors hindering vaccine acceptance. Continuous education focusing on safety and efficacy of the vaccine can reduce vaccine hesitancy and raise the rates of vaccination.

13.
Echo Res Pract ; 11(1): 7, 2024 Feb 29.
Artículo en Inglés | MEDLINE | ID: mdl-38424646

RESUMEN

INTRODUCTION: Athletic training can result in electrical and structural changes of the right ventricle that may mimic phenotypical features of arrhythmogenic right ventricular cardiomyopathy (ARVC), such as T-wave inversion and right heart dilatation. An erroneous interpretation may have consequences ranging from false reassurance in an athlete vulnerable to cardiac arrhythmias, to unnecessary sports restriction in a healthy individual. The primary aim of this study was to define normal RV dimension reference ranges for academy adolescent footballers of different ethnicities. Secondary aims include analysis of potential overlap between this adolescent group with ARVC criteria and comparison with normal adult ranges. RESULTS: Electrocardiographic (ECG) and echocardiographic data of 1087 academy male footballers aged between 13 and 18 years old (mean age 16.0 ± 0.5 years), attending mandatory cardiac screening were analysed. Ethnicity was categorised as white (n = 826), black (African/Caribbean; n = 166) and mixed-race (one parent white and one parent black; n = 95). Arrhythmogenic right ventricular cardiomyopathy major criteria for T-wave inversion was seen in 3.3% of the cohort. This was more prevalent in black footballers (12%) when compared to mixed race footballers (6.3%) or white footballers (1%), P < 0.05. Up to 59% of the cohort exceeded adult reference ranges for some of the right ventricular parameters, although values were similar to those seen in adult footballers. There were no differences in right ventricular dimensions between ethnicities. In particular, the right ventricular outflow tract diameter would fulfil major criteria for ARVC dimension in 12% of footballers. Overall, 0.2% of the cohort would fulfil diagnosis for 'definite' arrhythmogenic right ventricular cardiomyopathy and 2.2% would fulfil diagnosis for 'borderline' arrhythmogenic right ventricular cardiomyopathy for RV dimensions and ECG changes. This was seen more frequently in black footballers (9.9%) than mixed race footballers (3.9%) or white footballer (0.6%), P < 0.05. Among athletes meeting definite or borderline arrhythmogenic right ventricular cardiomyopathy criteria, no cardiomyopathy was identified after comprehensive clinical assessment, including with cardiac magnetic resonance imaging, exercise testing, ambulatory electrocardiograms and familial evaluation. CONCLUSION: Right heart sizes in excess of accepted adult ranges occurred in as many as one in two adolescent footballers. Structural adaptations in conjunction with anterior T-wave inversion may raise concern for ARVC, highlighting the need for evaluation in expert settings.

15.
Nat Genet ; 26(1): 16-7, 2000 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-10973239

RESUMEN

Aberrant promoter methylation and the associated loss of gene expression is a common accompaniment of human cancers. Nonetheless, it has been challenging to demonstrate in any given tumour that methylation of a specific gene was causal and not consequent to malignant transformation. In this regard, our attention was drawn to the genesis of gastric cancers in individuals with hereditary diffuse gastric cancer (HDGC). These individuals harbour germline mutations in the gene encoding E-cadherin, CDH1, but their cancers have consistently demonstrated absence of loss of heterozygosity at the CDH1 locus. These findings suggested the hypothesis that CDH1 promoter methylation might function as the 'second genetic hit' in the genesis of these cancers.


Asunto(s)
Cadherinas/genética , Metilación de ADN , Regiones Promotoras Genéticas , Neoplasias Gástricas/genética , Alelos , Cadherinas/biosíntesis , Membrana Celular/metabolismo , Citoplasma/metabolismo , Salud de la Familia , Femenino , Mucosa Gástrica/metabolismo , Mutación de Línea Germinal , Humanos , Inmunohistoquímica , Pérdida de Heterocigocidad , Masculino , Repeticiones de Microsatélite/genética , Polimorfismo Genético , Neoplasias Gástricas/metabolismo
16.
Water Sci Technol ; 67(1): 174-9, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23128636

RESUMEN

The objective of the study was to identify the impact of co-digesting clarifier skimmings on the overall methane generation from the treatment plant and additional energy value of the increased methane production. Biogas production from co-digesting clarifier skimmings and sewage sludge in pilot-scale fed-batch mesophilic anaerobic digesters has been evaluated. The digester was fed with increasing quantities of clarifier skimmings loads: 1.5, 2.6, 3.5 and 7.0 g COD equivalent/(L·d) (COD: chemical oxygen demand). Average volatile solids reduction of 65% was achieved in the scum-fed digester, compared with 51% in the control digester. Average 69% COD removal was achieved at highest scum loading (7 g COD eq/(L·d)) with approximate methane yield of 250 L CH(4)/kg COD fed (4 ft(3)/lb COD fed). The results show that scum as co-substrate in anaerobic digestion systems improves biogas yields while a 29% increase in specific CH(4) yield could be achieved when scum load is 7 g COD eq/(L·d). Based on the pilot-scale study results and full-scale data from South East Water Pollution Control Plant and Northeast Water Pollution Control Plant the expected annual energy recovery would be approximately 1.7 billion BTUs or nearly 0.5 million kWh.


Asunto(s)
Biocombustibles , Aguas del Alcantarillado/química , Eliminación de Residuos Líquidos/métodos , Anaerobiosis , Metano/química , Metano/metabolismo , Purificación del Agua/métodos
17.
Genes Immun ; 13(7): 523-9, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22717702

RESUMEN

Following the initial diversity generated by V(D)J recombination, somatic hypermutation is the principal mechanism for producing further antibody repertoire diversity in antigen-experienced B cells. While somatic hypermutation typically results in single-nucleotide substitutions, the infrequent incorporation of genetic insertions and deletions has also been associated with the somatic hypermutation process. We used high-throughput antibody sequencing to determine the sequence of thousands of antibody genes containing somatic hypermutation-associated insertions and deletions (SHA indels), which revealed significant differences between the location of SHA indels and somatic mutations. Further, we identified a cluster of insertions and deletions in the antibody framework 3 region, which corresponds to the hypervariable region 4 (HV4) in T-cell receptors. We propose that this HV4-like region, identified by SHA indel analysis, represents a region of under-appreciated affinity maturation potential. Finally, through the analysis of both location and length distribution of SHA indels, we have determined regions of structural plasticity within the antibody protein.


Asunto(s)
Mutación INDEL/genética , Hipermutación Somática de Inmunoglobulina/genética , Sitios de Unión , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Inmunoglobulina G/química , Inmunoglobulina G/genética , Inmunoglobulina M/química , Inmunoglobulina M/genética , Estructura Terciaria de Proteína , Análisis de Secuencia de ADN
18.
Genes Immun ; 13(6): 469-73, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22622198

RESUMEN

Vast diversity in the antibody repertoire is a key component of the adaptive immune response. This diversity is generated centrally through the assembly of variable, diversity and joining gene segments, and peripherally by somatic hypermutation and class-switch recombination. The peripheral diversification process is thought to only occur in response to antigenic stimulus, producing antigen-selected memory B cells. Surprisingly, analyses of the variable, diversity and joining gene segments have revealed that the naïve and memory subsets are composed of similar proportions of these elements. Lacking, however, is a more detailed study, analyzing the repertoires of naïve and memory subsets at the level of the complete V(D)J recombinant. This report presents a thorough examination of V(D)J recombinants in the human peripheral blood repertoire, revealing surprisingly large repertoire differences between circulating B-cell subsets and providing genetic evidence for global control of repertoire diversity in naïve and memory circulating B-cell subsets.


Asunto(s)
Diversidad de Anticuerpos/genética , Memoria Inmunológica/genética , Adulto , Subgrupos de Linfocitos B/inmunología , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Inmunoglobulina G/genética , Inmunoglobulina M/genética , Recombinación V(D)J
20.
Br J Cancer ; 104(1): 51-9, 2011 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-21081932

RESUMEN

BACKGROUND: This study investigated the relationship of obesity, insulin resistance, inflammation and angiogenesis with cancer progression and survival in a colorectal cancer cohort. METHODS: Clinical and pathological data, along with anthropometric and follow-up data, were collected from 344 consecutive colorectal cancer patients. Serum samples at diagnosis were analysed by immunoassay for adiponectin, C-reactive protein (CRP), vascular endothelial growth factor-A (VEGF-A), angiopoietin-2 (Ang-2), insulin-like growth factor-1 (IGF-1), insulin and C-peptide. RESULTS: Serum Ang-2 and VEGF-A levels increased with tumour T stage (P=0.007 and P=0.025, respectively) and N stage (P=0.02 and P=0.03, respectively), and correlated with CRP levels (r=0.43, P<0.001 and r=0.23, P<0.001, respectively). Angiopoietin-2 correlated with C-peptide (r=0.14, P=0.007) and VEGF-A with IGF-1 in males (r=0.25, P=0.001). Kaplan-Meier analysis showed that patients with high serum levels of CRP and Ang-2 had significantly reduced survival (both P≤0.001). After adjusting for tumour stage and age, Ang-2 remained a significant predictor of survival. The CRP levels were inversely associated with survival in American Joint Committee on Cancer stage II patients (P=0.038), suggesting that CRP could be used to support treatment decisions in this subgroup. Serum markers and anthropometric measures of obesity correlated with each other, but not with survival. CONCLUSION: Our study supports the concept that obesity-related inflammation, rather than obesity itself, is associated with colorectal cancer progression and survival. The study confirms serum Ang-2 as a predictive marker for outcome of colorectal cancer.


Asunto(s)
Adenocarcinoma/mortalidad , Angiopoyetina 2/sangre , Biomarcadores/metabolismo , Proteína C-Reactiva/metabolismo , Neoplasias Colorrectales/mortalidad , Resistencia a la Insulina , Obesidad/sangre , Adenocarcinoma/sangre , Adenocarcinoma/patología , Adulto , Anciano , Anciano de 80 o más Años , Índice de Masa Corporal , Péptido C/sangre , Neoplasias Colorrectales/sangre , Neoplasias Colorrectales/patología , Ensayo de Inmunoadsorción Enzimática , Femenino , Humanos , Insulina/sangre , Factor I del Crecimiento Similar a la Insulina/metabolismo , Masculino , Persona de Mediana Edad , Estudios Prospectivos , Tasa de Supervivencia , Resultado del Tratamiento , Factor A de Crecimiento Endotelial Vascular/sangre
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