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1.
Nano Lett ; 23(16): 7675-7682, 2023 Aug 23.
Artículo en Inglés | MEDLINE | ID: mdl-37578323

RESUMEN

The interplay of spin-orbit coupling and crystal symmetry can generate spin-polarized bands in materials only a few atomic layers thick, potentially leading to unprecedented physical properties. In the case of bilayer materials with global inversion symmetry, locally broken inversion symmetry can generate degenerate spin-polarized bands, in which the spins in each layer are oppositely polarized. Here, we demonstrate that the hidden spins in a Tl bilayer crystal are revealed by growing it on Ag(111) of sizable lattice mismatch, together with the appearance of a remarkable phenomenon unique to centrosymmetric hidden-spin bilayer crystals: a novel band splitting in both spin and space. The key to success in observing this novel splitting is that the interaction at the interface has just the right strength: it does not destroy the original wave functions of the Tl bilayer but is strong enough to induce an energy separation.

2.
Biochem J ; 475(4): 733-748, 2018 02 16.
Artículo en Inglés | MEDLINE | ID: mdl-29343611

RESUMEN

Hydrogen sulfide (H2S) plays important roles in the pathogenesis of periodontitis. Oral pathogens typically produce H2S from l-cysteine in addition to pyruvate and [Formula: see text] However, fn1055 from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 encodes a pyridoxal 5'-phosphate (PLP)-dependent enzyme that catalyzes the production of H2S and l-serine from l-cysteine and H2O, an unusual cysteine (hydroxyl) lyase reaction (ß-replacement reaction). To reveal the reaction mechanism, the crystal structure of substrate-free Fn1055 was determined. Based on this structure, a model of the l-cysteine-PLP Schiff base suggested that the thiol group forms hydrogen bonds with Asp232 and Ser74, and the substrate α-carboxylate interacts with Thr73 and Gln147 Asp232 is a unique residue to Fn1055 and its substitution to asparagine (D232N) resulted in almost complete loss of ß-replacement activity. The D232N structure obtained in the presence of l-cysteine contained the α-aminoacrylate-PLP Schiff base in the active site, indicating that Asp232 is essential for the addition of water to the α-aminoacrylate to produce the l-serine-PLP Schiff base. Rapid-scan stopped-flow kinetic analyses showed an accumulation of the α-aminoacrylate intermediate during the reaction cycle, suggesting that water addition mediated by Asp232 is the rate-limiting step. In contrast, mutants containing substitutions of other active-site residues (Ser74, Thr73, and Gln147) exhibited reduced ß-replacement activity by more than 100-fold. Finally, based on the structural and biochemical analyses, we propose a mechanism of the cysteine (hydroxyl) lyase reaction by Fn1055. The present study leads to elucidation of the H2S-producing mechanism in F. nucleatum.


Asunto(s)
Cisteína Sintasa/química , Cisteína/química , Fusobacterium nucleatum/enzimología , Conformación Proteica , Catálisis , Dominio Catalítico , Cristalografía por Rayos X , Cisteína/metabolismo , Cisteína Sintasa/genética , Cisteína Sintasa/metabolismo , Fusobacterium nucleatum/patogenicidad , Humanos , Sulfuro de Hidrógeno/química , Sulfuro de Hidrógeno/metabolismo , Radical Hidroxilo/química , Cinética , Modelos Moleculares , Bases de Schiff/química
3.
Microb Pathog ; 102: 82-88, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27914958

RESUMEN

The periodontitis-associated pathogen Treponema denticola is a spirochetal bacterium that swims by rotating its cell body like a corkscrew using periplasmic flagella. We compared physiologic and pathogenic properties, including motility, in four strains of T. denticola. Phase-contrast microscopy showed differential motility between the strains; ATCC 35404 showed the highest motility, followed by ATCC 33521, and the remaining two strains (ATCC 35405 and ATCC 33520) showed the lowest motility. Transmission electron microscopy showed that the low motility strains exhibited extracellular flagellar protrusions resulting from elongated flagella. Treponemal flagellar filaments are composed of three flagellins of FlaB1, FlaB2 and FlaB3. FlaB1 expression was comparable between the strains, whereas FlaB2 expression was lowest in ATCC 35404. FlaB3 expression varied among strains, with ATCC 35405, ATCC 33520, ATCC 33521, and ATCC 35404 showing the highest to lowest expression levels, respectively. Additionally, the low motility strains showed faster electrophoretic mobility of FlaB3, suggesting that posttranslational modifications of these proteins may have varied, because the amino acid sequences of FlaB3 were identical between the strains. These results suggest that inappropriate expression of FlaB2 and FlaB3 caused the unusual elongation of flagella that resulted in decreased motility. Furthermore, the low motility strains grew to higher bacterial density, and showed greater chymotrypsin-like protease activity, and more bacterial cells associated with gingival epithelial cells in comparison with the high motility strains. There may be a relationship between motility and these properties, but the genetic factors underlying this association remain unclear.


Asunto(s)
Fenómenos Fisiológicos Bacterianos , Treponema denticola/fisiología , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Línea Celular , Biología Computacional/métodos , Células Epiteliales/microbiología , Regulación Bacteriana de la Expresión Génica , Infecciones por Bacterias Gramnegativas/microbiología , Humanos , Técnicas In Vitro , Péptido Hidrolasas/metabolismo , Enfermedades Periodontales/microbiología , Fenotipo , Transcripción Genética , Treponema denticola/ultraestructura
4.
Biochim Biophys Acta ; 1850(12): 2582-91, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26432601

RESUMEN

BACKGROUND: Despite evidence demonstrating the importance of butyrate-producing bacteria in host health and disease, the characterization of enzymes responsible for butyrate production has not been fully elucidated in the periodontopathogen, Porphyromonas gingivalis. METHODS: LC-MS/MS and colorimetric analyses were employed to enzymatically characterize recombinant PGN_0724 in P. gingivalis as a succinate semialdehyde reductase. The concentration of short chain fatty acids in the culture supernatant of the wild-type bacteria and a mutant strain lacking the PGN_0724 gene were quantified using GC-MS. RESULTS: Incubation of recombinant PGN_0724 with succinate semialdehyde and NADH resulted in the production of 4-hydroxybutyrate as well as consumption of succinate semialdehyde. Double reciprocal plots showed that the reaction catalyzed by the PGN_0724 protein was associated with a ternary complex mechanism. The growth speed and final turbidity of the mutant strain were much lower than those of the wild-type cells. The capacity of the mutant strain to produce butyrate, isobutyrate, and isovalerate was 30%, 15%, and 45%, respectively, of that of the wild-type strain, while the mutant strain produced approximately 3.9-fold more propionate than the wild type. CONCLUSIONS: The pathway responsible for butyrate production is important for the growth of P. gingivalis and appears to be associated with production of the other short chain fatty acids. GENERAL SIGNIFICANCE: The aim of this study was to delineate the mechanisms involved in the production of 4-hydroxybutyrate, which is an intermediate in the biosynthetic pathway for production of butyrate, which is a virulence factor in P. gingivalis.


Asunto(s)
Aldehídos/metabolismo , Hidroxibutiratos/metabolismo , Porphyromonas gingivalis/metabolismo , Cromatografía en Gel , Reacción en Cadena de la Polimerasa , Espectrometría de Masas en Tándem
5.
Arch Biochem Biophys ; 596: 138-48, 2016 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-27013206

RESUMEN

The molecular basis of butyrate production in Porphyromonas gingivalis has not been fully elucidated, even though butyrate, a short chain fatty acid (SCFA), can exert both beneficial and harmful effects on a mammalian host. A database search showed that the amino acid sequence of PGN_0723 protein was 50.6% identical with CoA-dependent succinate semialdehyde dehydrogenase (SSADH) in Clostridium kluyveri. By contrast, the protein has limited identity (19.1%) with CoA-independent SSADH in Escherichia coli. Compared with the wild type, growth speed, and final turbidity were lower in the PGN_0723 deletion strain that was constructed by replacing the PGN_0723 gene with an erythromycin resistance cassette. Gas chromatography mass spectrometry revealed the supernatant concentrations of the SCFAs butyrate, isobutyrate, and isovalerate, but not propionate, in the PGN_0723 deletion strain were also lower than those in the wild type. The wild-type phenotype was restored in a complemented strain. We cloned the PGN_0723 gene, purified the recombinant protein, and computationally constructed its three-dimensional model. A colorimetric assay and liquid chromatography-tandem mass spectrometry analysis demonstrated that the recombinant PGN_0723 produces succinate semialdehyde, which is an intermediate in the P. gingivalis butyrate synthesis pathway, not from succinate but from succinyl-CoA in the presence of NAD(P)H via a ping-pong bi-bi mechanism. Asn110Ala and Cys239Ala mutations resulted in a significant loss of the CoA-dependent PGN_0723 enzymatic activity. The study provides new insights into butyrate production, which constitutes a virulence factor in P. gingivalis.


Asunto(s)
Acilcoenzima A/metabolismo , Proteínas Bacterianas/metabolismo , Butiratos/metabolismo , Porphyromonas gingivalis/enzimología , Succinato-Semialdehído Deshidrogenasa (NADP+)/metabolismo , Acilcoenzima A/genética , Sustitución de Aminoácidos , Proteínas Bacterianas/genética , Eliminación de Gen , Mutación Missense , NADP/genética , NADP/metabolismo , Porphyromonas gingivalis/genética , Succinato-Semialdehído Deshidrogenasa (NADP+)/genética
6.
J Chem Phys ; 141(11): 114701, 2014 Sep 21.
Artículo en Inglés | MEDLINE | ID: mdl-25240362

RESUMEN

Using ultrahigh-vacuum low-temperature scanning tunneling microscopy and spectroscopy combined with first principles density functional theory calculations, we have investigated structural and electronic properties of pristine and potassium (K)-deposited picene thin films formed in situ on a Ag(111) substrate. At low coverages, the molecules are uniformly distributed with the long axis aligned along the [112̄] direction of the substrate. At higher coverages, ordered structures composed of monolayer molecules are observed, one of which is a monolayer with tilted and flat-lying molecules resembling a (11̄0) plane of the bulk crystalline picene. Between the molecules and the substrate, the van der Waals interaction is dominant with negligible hybridization between their electronic states; a conclusion that contrasts with the chemisorption exhibited by pentacene molecules on the same substrate. We also observed a monolayer picene thin film in which all molecules were standing to form an intermolecular π stacking. Two-dimensional delocalized electronic states are found on the K-deposited π stacking structure.

7.
Proteins ; 80(10): 2447-58, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22674431

RESUMEN

Hydrogen sulfide (H(2)S) is a causative agent of oral malodor and may play an important role in the pathogenicity of oral bacteria such as Streptococcus anginosus. In this microorganism, H(2)S production is associated with ßC-S lyase (Lcd) encoded by lcd gene, which is a pyridoxal 5'-phosphate (PLP)-dependent enzyme that catalyzes the α,ß-elimination of sulfur-containing amino acids. When Lcd acts on L-cysteine, H(2)S is produced along with pyruvate and ammonia. To understand the H(2)S-producing mechanism of Lcd in detail, we determined the crystal structures of substrate-free Lcd (internal aldimine form) and two reaction intermediate complexes (external aldimine and α-aminoacrylate forms). The formation of intermediates induced little changes in the overall structure of the enzyme and in the active site residues, with the exception of Lys234, a PLP-binding residue. Structural and mutational analyses highlighted the importance of the active site residues Tyr60, Tyr119, and Arg365. In particular, Tyr119 forms a hydrogen bond with the side chain oxygen atom of L-serine, a substrate analog, in the external aldimine form suggesting its role in the recognition of the sulfur atom of the true substrate (L-cysteine). Tyr119 also plays a role in fixing the PLP cofactor at the proper position during catalysis through binding with its side chain. Finally, we partly modified the catalytic mechanism known for cystalysin, a ßC-S lyase from Treponema denticola, and proposed an improved mechanism, which seems to be common to the ßC-S lyases from oral bacteria.


Asunto(s)
Proteínas Bacterianas/química , Liasas/química , Streptococcus anginosus/enzimología , Absorción , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Catálisis , Cistationina gamma-Liasa , Cisteína/metabolismo , Sulfuro de Hidrógeno/metabolismo , Liasas/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Fosfato de Piridoxal/metabolismo , Alineación de Secuencia , Streptococcus anginosus/química
8.
Phys Rev Lett ; 109(11): 116102, 2012 Sep 14.
Artículo en Inglés | MEDLINE | ID: mdl-23005651

RESUMEN

With the advent of scanning probe microscopy techniques that involve a tip and a sample in relative motion in the contact or noncontact regime, the microscopic aspects of friction have become a major branch of research called nanotribology. A significant number of recent studies in this field have concentrated on the distinction between electronic and phononic contributions to friction. Here, we are using the combination of spin-polarized scanning tunneling microscopy and single-atom manipulation in order to move individual magnetic atoms over a magnetic template. By monitoring the spin-resolved manipulation traces and comparing them with results of Monte Carlo simulations, we are able to reveal the characteristic friction force variations resulting from the occurrence of spin friction on the atomic scale.

9.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 68(Pt 12): 1507-10, 2012 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-23192034

RESUMEN

Hydrogen sulfide produced by oral bacteria is responsible for oral malodour. Two homologous hydrogen sulfide-producing enzymes, Fn1220 and Cdl, from Fusobacterium nucleatum (which actively produces hydrogen sulfide) were overproduced, purified and crystallized. X-ray diffraction data were collected from the crystals using a synchrotron-radiation source. The Fn1220 crystal belonged to tetragonal space group P4(1)2(1)2 or P4(3)2(1)2 (unit-cell parameters a=b=116.8, c=99.2 Å) and the Cdl crystal belonged to monoclinic space group P2(1) (unit-cell parameters a=84.9, b=70.9, c=87.6 Å, ß=90.3°).


Asunto(s)
Proteínas Bacterianas/química , Fusobacterium nucleatum/enzimología , Sulfuro de Hidrógeno/metabolismo , Proteínas Bacterianas/metabolismo , Cristalización , Cristalografía por Rayos X , Fusobacterium nucleatum/metabolismo , Sulfuro de Hidrógeno/química
10.
Microbiology (Reading) ; 157(Pt 10): 2992-3000, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-21798982

RESUMEN

Fusobacterium nucleatum produces an abundance of hydrogen sulfide (H(2)S) in the oral cavity that is mediated by several enzymes. The identification and characterization of three distinct enzymes (Fn0625, Fn1055 and Fn1220) in F. nucleatum that catalyse the production of H(2)S from l-cysteine have been reported. In the current study, a novel enzyme involved in the production of H(2)S in F. nucleatum ATCC 25586, whose molecular mass had been estimated to be approximately 130 kDa, was identified by two-dimensional electrophoresis combined with MALDI-TOF MS. The enzyme, Fn1419, has previously been characterized as an l-methionine γ-lyase. SDS-PAGE and gel-filtration chromatography indicated that Fn1419 has a molecular mass of 43 kDa and forms tetramers in solution. Unlike other enzymes associated with H(2)S production in F. nucleatum, the quaternary structure of Fn1419 was not completely disrupted by exposure to SDS. The purified recombinant enzyme exhibited a K(m) of 0.32±0.02 mM and a k(cat) of 0.69±0.01 s(-1). Based on current and published data, the enzymic activity for H(2)S production from l-cysteine in F. nucleatum is ranked as follows: Fn1220>Fn1055>Fn1419>Fn0625. Based on kinetic values and relative mRNA levels of the respective genes, as determined by real-time quantitative PCR, the amount of H(2)S produced by Fn1419 was estimated to be 1.9 % of the total H(2)S produced from l-cysteine in F. nucleatum ATCC 25586. In comparison, Fn1220 appeared to contribute significantly to H(2)S production (87.6 %).


Asunto(s)
Proteínas Bacterianas/metabolismo , Liasas de Carbono-Azufre/metabolismo , Cisteína/metabolismo , Fusobacterium nucleatum/enzimología , Sulfuro de Hidrógeno/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Liasas de Carbono-Azufre/química , Liasas de Carbono-Azufre/genética , Fusobacterium nucleatum/química , Fusobacterium nucleatum/genética , Fusobacterium nucleatum/metabolismo , Cinética
11.
Microbiology (Reading) ; 157(Pt 7): 2164-2171, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21493682

RESUMEN

A third enzyme that produces hydrogen sulfide from L-cysteine was identified in Fusobacterium nucleatum subsp. nucleatum. The fn1055 gene was cloned from a cosmid library constructed with genomic DNA of F. nucleatum ATCC 25586. Despite the database annotation that the product of fn1055 is a cysteine synthase, reverse-phase HPLC revealed that no L-cysteine was produced in vitro by the purified Fn1055 protein; however, the enzyme did produce L-serine. In addition, a cysteine auxotroph, Escherichia coli NK3, transformed with a plasmid containing the fn1055 gene did not grow without cysteine, which further suggests that Fn1055 does not function as a cysteine synthase. The Michaelis-Menten kinetics (K(m) =0.09 ± 0.001 mM and k(cat) =5.43 ± 0.64 s(-1)) of the purified enzyme showed that the capacity of Fn1055 to produce hydrogen sulfide was between that of two other enzymes, Fn0625 and Fn1220. Incubation of Fn1055 with L-cysteine resulted in the production of hydrogen sulfide, but not of pyruvate, ammonia or lanthionine, which are all byproducts produced in addition to hydrogen sulfide when Fn0625 or Fn1220 is incubated with L-cysteine. Instead, Fn1055 produced L-serine in its reaction with L-cysteine. Fn1055 produces hydrogen sulfide from l-cysteine by a mechanism that is different from that of Fn0625 or Fn1220.


Asunto(s)
Proteínas Bacterianas/metabolismo , Cisteína/metabolismo , Fusobacterium nucleatum/metabolismo , Sulfuro de Hidrógeno/metabolismo , Serina/biosíntesis , Proteínas Bacterianas/genética , Cromatografía de Gases , Cromatografía Líquida de Alta Presión , Cisteína Sintasa/genética , Cisteína Sintasa/metabolismo , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Escherichia coli/metabolismo , Fusobacterium nucleatum/enzimología , Fusobacterium nucleatum/genética , Cinética
12.
Methods Mol Biol ; 2210: 167-172, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-32815137

RESUMEN

Butyrate is one of the most harmful metabolic end products found in the oral cavity. Thus, it would be important to characterize the enzymes responsible for production of this metabolite to elucidate the pathogenicity of periodontogenic bacteria. Here, a spectrophotometric assay for butyryl-CoA:acetate CoA transferase activity and gas chromatography-mass spectrometry measurement of butyrate and other short chain fatty acids such as acetate, propionate, isobutyrate, and isovalerate are described.


Asunto(s)
Acilcoenzima A/metabolismo , Proteínas Bacterianas/metabolismo , Butiratos/metabolismo , Coenzima A Transferasas/metabolismo , Porphyromonas gingivalis/metabolismo , Infecciones por Bacteroidaceae/microbiología , Colorimetría/métodos , Ácidos Grasos Volátiles/metabolismo , Cromatografía de Gases y Espectrometría de Masas/métodos , Humanos , Espectrofotometría/métodos
13.
Arch Oral Biol ; 122: 105024, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33352361

RESUMEN

OBJECTIVE: We evaluated the effect of antimicrobial photodynamic therapy (a-PDT) with Rose Bengal and blue light LED on bacteria that initiate and promote dental caries. DESIGN: Colony forming units of Streptococcus mutans, Streptococcus sobrinus, Streptococcus sanguinis, and Lactobacillus salivarius under planktonic and biofilm conditions were counted after a-PDT treatment using Rose Bengal and blue light LED. In addition, cariogenic bacteria from saliva and dental plaques from ten volunteers were used for evaluation of a-PDT treatment. RESULTS: We found that a-PDT using Rose Bengal at > 10 µg/mL had antimicrobial effects on oral Gram-positive S. mutans, S. sobrinus, S. sanguinis, and L. salivarius under both planktonic and biofilm conditions. The effect was also observed for cariogenic bacteria that formed biofilms containing water-insoluble glucans, through which the bacteria are firmly attached to the tooth surface. Moreover, a-PDT led to a marked reduction in cariogenic bacteria in saliva and dental plaques. CONCLUSION: a-PDT could be a useful approach for controlling dental caries in dental surgery.


Asunto(s)
Antiinfecciosos , Fotoquimioterapia , Rosa Bengala/farmacología , Streptococcus mutans/efectos de los fármacos , Streptococcus mutans/efectos de la radiación , Antiinfecciosos/farmacología , Biopelículas/efectos de los fármacos , Biopelículas/efectos de la radiación , Caries Dental/tratamiento farmacológico , Humanos
14.
Nat Commun ; 12(1): 5674, 2021 09 28.
Artículo en Inglés | MEDLINE | ID: mdl-34584098

RESUMEN

Emerging evidence is revealing that alterations in gut microbiota are associated with colorectal cancer (CRC). However, very little is currently known about whether and how gut microbiota alterations are causally associated with CRC development. Here we show that 12 faecal bacterial taxa are enriched in CRC patients in two independent cohort studies. Among them, 2 Porphyromonas species are capable of inducing cellular senescence, an oncogenic stress response, through the secretion of the bacterial metabolite, butyrate. Notably, the invasion of these bacteria is observed in the CRC tissues, coinciding with the elevation of butyrate levels and signs of senescence-associated inflammatory phenotypes. Moreover, although the administration of these bacteria into ApcΔ14/+ mice accelerate the onset of colorectal tumours, this is not the case when bacterial butyrate-synthesis genes are disrupted. These results suggest a causal relationship between Porphyromonas species overgrowth and colorectal tumourigenesis which may be due to butyrate-induced senescence.


Asunto(s)
Bacterias/metabolismo , Butiratos/metabolismo , Carcinogénesis/patología , Neoplasias Colorrectales/patología , Microbioma Gastrointestinal , Bacterias/clasificación , Bacterias/genética , Senescencia Celular/fisiología , Neoplasias Colorrectales/microbiología , Células Epiteliales/microbiología , Células Epiteliales/fisiología , Heces/microbiología , Humanos , Intestinos/citología , Intestinos/microbiología , Intestinos/fisiología , Porphyromonas/genética , Porphyromonas/metabolismo , ARN Ribosómico 16S/genética
15.
Microbiology (Reading) ; 156(Pt 7): 2260-2269, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20413556

RESUMEN

Fusobacterium nucleatum produces a large amount of the toxic metabolite hydrogen sulfide in the oral cavity. Here, we report the molecular basis of F. nucleatum H(2)S production, which is associated with two different enzymes: the previously reported Cdl (Fn1220) and the newly identified Lcd (Fn0625). SDS-PAGE analysis with activity staining revealed that crude enzyme extracts from F. nucleatum ATCC 25586 contained three major H(2)S-producing proteins. Two of the proteins with low molecular masses migrated similarly to purified Fn0625 and Fn1220. Their kinetic values suggested that Fn0625 had a lower enzymic capacity to produce H(2)S from L-cysteine (approximately 30%) than Fn1220. The Fn0625 protein degraded a variety of substrates containing betaC-S linkages to produce ammonia, pyruvate and sulfur-containing products. Unlike Fn0625, Fn1220 produced neither pyruvate nor ammonia from L-cysteine. Reversed-phase HPLC separation and mass spectrometry showed that incubation of L-cysteine with Fn1220 produced H(2)S and an uncommon amino acid, lanthionine, which is a natural constituent of the peptidoglycans of F. nucleatum ATCC 25586. In contrast, most of the sulfur-containing substrates tested, except L-cysteine, were not used by Fn1220. Real-time PCR analysis demonstrated that the fn1220 gene showed several-fold higher expression than fn0625 and housekeeping genes in exponential-phase cultures of F. nucleatum. Thus, we conclude that Fn0625 and Fn1220 produce H(2)S in distinct manners: Fn0625 carries out beta-elimination of L-cysteine to produce H(2)S, pyruvate and ammonia, whereas Fn1220 catalyses the beta-replacement of L-cysteine to produce H(2)S and lanthionine, the latter of which may be used for peptidoglycan formation in F. nucleatum.


Asunto(s)
Alanina/análogos & derivados , Aspartato Aminotransferasas/metabolismo , Proteínas Bacterianas/metabolismo , Cisteína Sintasa/metabolismo , Fusobacterium nucleatum/metabolismo , Homocisteína/biosíntesis , Sulfuro de Hidrógeno/metabolismo , Alanina/biosíntesis , Amoníaco/metabolismo , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Cisteína Sintasa/química , Cisteína Sintasa/genética , Fusobacterium nucleatum/química , Fusobacterium nucleatum/enzimología , Fusobacterium nucleatum/genética , Cinética , Ácido Pirúvico/metabolismo , Especificidad por Sustrato , Sulfuros
16.
Appl Environ Microbiol ; 76(13): 4260-8, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20472741

RESUMEN

The l-tryptophan degradation product indole is a purported extracellular signaling molecule that influences biofilm formation in various bacteria. Here we analyzed the mechanisms of indole production in Fusobacterium nucleatum and the effects of tryptophan and indole on F. nucleatum planktonic and biofilm cells. The amino acid sequence deduced from the fn1943 gene in F. nucleatum ATCC 25586 was 28% identical to that deduced from tnaA in Escherichia coli, which encodes tryptophanase catalyzing the beta-elimination of l-tryptophan to produce indole. The fn1943 gene was cotranscribed with the downstream gene fn1944, which is a homolog of tnaB encoding low-affinity tryptophan permease. The transcript started at position -68 or -153 from the first nucleotide of the fn1943 translation initiation codon. Real-time quantitative PCR showed that much more F. nucleatum fn1943 transcripts were obtained from log-phase cells than from stationary-phase cells. Indole production by the purified recombinant protein encoded by fn1943 was examined using high-performance liquid chromatography. The K(m) and k(cat) of the enzyme were 0.26 +/- 0.03 mM and 0.74 +/- 0.04 s(-1), respectively. F. nucleatum biofilm formation and the biofilm supernatant concentration of indole increased dose dependently with increasing tryptophan concentrations. Exogenous indole also increased F. nucleatum biofilm formation in a dose-dependent manner. Even at very high concentrations, tryptophan did not affect fn1943 expression, whereas similar indole concentrations decreased expression. Thus, exogenous tryptophan and indole were suggested to increase F. nucleatum biofilms.


Asunto(s)
Biopelículas/efectos de los fármacos , Fusobacterium nucleatum/efectos de los fármacos , Fusobacterium nucleatum/crecimiento & desarrollo , Indoles/farmacología , Triptófano/metabolismo , Secuencia de Bases , Biopelículas/crecimiento & desarrollo , Fusobacterium nucleatum/enzimología , Indoles/metabolismo , Datos de Secuencia Molecular , Plancton/efectos de los fármacos , Plancton/crecimiento & desarrollo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Triptófano/farmacología , Triptofanasa/genética , Triptofanasa/metabolismo
17.
Appl Microbiol Biotechnol ; 86(2): 615-23, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19902205

RESUMEN

Mushrooms contain large quantities of alpha-glucans. Shiitake (Lentinula edodes), Japan's most popular edible mushroom, has been reported to contain about 6% (weight/dried weight) of alpha-(1,3)-glucan. This glucan is one of the major components of oral biofilm formed by the cariogenic bacteria Streptococcus mutans and Streptococcus sobrinus. We found that extracts from shiitake and other edible mushrooms could reduce preformed biofilms of S. mutans and S. sobrinus in the presence of dextranase. We also investigated the alpha-glucanase activities of shiitake mushroom extracts and their effects on biofilm formation. The extracts possessed alpha-glucanase activity and degraded water-insoluble glucans from mutans streptococci. The extracts strongly inhibited the sucrose-dependent formation of biofilms by S. mutans and S. sobrinus in the presence of dextranase. Our results suggest that some components of mushrooms, including alpha-glucanases, might inhibit the sucrose-induced formation of oral biofilms.


Asunto(s)
Antiinfecciosos/aislamiento & purificación , Antiinfecciosos/farmacología , Biopelículas/efectos de los fármacos , Hongos Shiitake/química , Streptococcus mutans/efectos de los fármacos , Streptococcus sobrinus/efectos de los fármacos , Sacarosa/metabolismo , Dextranasa/metabolismo , Japón
18.
Gan To Kagaku Ryoho ; 37(2): 299-302, 2010 Feb.
Artículo en Japonés | MEDLINE | ID: mdl-20154489

RESUMEN

We report a 37-year-old woman who complained of chest discomfort as of August 2004, and was found to have advanced esophageal cancer in the upper thoracic area in December 2004.S he was diagnosed as Stage IVa (T4N1M0) because chest computed tomography (CT) indicated trachea invasion and lymph node metastasis. We diagnosed it to be a case of unresectable esophageal cancer, and she underwent chemoradiation therapy. CT showed regression of the main tumor and metastatic lymph nodes when the CRT course was completed. The main tumor disappeared macroscopically. We again considered an operation, but the CRT was so effective that the patient wished to continue CRT and underwent three courses. Endoscopy showed disappearance of the main tumor and Lugol's solution. Following this, 10 courses of the treatment with CDDP alone (CDDP 10 mg/weekly) were continued until the appearance of renal dysfunction. S-1 (100 mg/body/day)was started in September 2005. The treatment is currently ongoing, and no recurrence or metastases had occurred as of March 2009.


Asunto(s)
Protocolos de Quimioterapia Combinada Antineoplásica/uso terapéutico , Cisplatino/uso terapéutico , Neoplasias Esofágicas/tratamiento farmacológico , Neoplasias Esofágicas/radioterapia , Ácido Oxónico/uso terapéutico , Tegafur/uso terapéutico , Adulto , Antígeno Carcinoembrionario/sangre , Cisplatino/administración & dosificación , Terapia Combinada , Combinación de Medicamentos , Neoplasias Esofágicas/sangre , Neoplasias Esofágicas/diagnóstico por imagen , Femenino , Humanos , Ácido Oxónico/administración & dosificación , Inducción de Remisión , Tegafur/administración & dosificación , Tomografía Computarizada por Rayos X
19.
J Bacteriol ; 191(6): 1891-900, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19151140

RESUMEN

The antigenically related coaggregation receptor polysaccharides (RPS) of Streptococcus oralis strains C104 and SK144 mediate recognition of these bacteria by other members of the dental plaque biofilm community. In the present study, the structure of strain SK144 RPS was established by high resolution NMR spectroscopy as [6Galfbeta1-6GalNAcbeta1-3Galalpha1-2ribitol-5-PO(4)(-)-6Galfbeta1-3Galbeta1](n), thereby indicating that this polysaccharide and the previously characterized RPS of strain C104 are identical, except for the linkage between Gal and ribitol-5-phosphate, which is alpha1-2 in strain SK144 versus alpha1-1 in strain C104. Studies to define the molecular basis of RPS structure revealed comparable genes for six putative transferases and a polymerase in the rps loci of these streptococci. Cell surface RPS production was abolished by disrupting the gene for the first transferase of strain C104 with a nonpolar erm cassette. It was restored in the resulting mutant by plasmid-based expression of either wcjG, the corresponding gene of S. pneumoniae for serotype 10A capsular polysaccharide (CPS) biosynthesis or wbaP for the transferase of Salmonella enterica that initiates O-polysaccharide biosynthesis. Thus, WcjG, like WbaP, appears to initiate polysaccharide biosynthesis by transferring galactose-1-phosphate to a lipid carrier. In further studies, the structure of strain C104 RPS was converted to that of strain SK144 by replacing the gene (wefM) for the fourth transferase in the rps locus of strain C104 with the corresponding gene (wcrC) of strain SK144 or Streptococcus pneumoniae serotype 10A. These findings identify genetic markers for the different ribitol-5-phosphate-containing types of RPS present in S. oralis and establish a close relationship between these polysaccharides and serogroup 10 CPSs of S. pneumoniae.


Asunto(s)
Pentosafosfatos/análisis , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/genética , Streptococcus oralis/química , Streptococcus oralis/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Secuencia de Carbohidratos , Datos de Secuencia Molecular , Polisacáridos Bacterianos/metabolismo , Serotipificación , Streptococcus/química , Streptococcus/clasificación , Streptococcus/genética , Streptococcus/metabolismo , Streptococcus oralis/clasificación , Streptococcus oralis/metabolismo
20.
Cell Tissue Res ; 335(2): 397-405, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19023598

RESUMEN

Pulmonary surfactant is synthesized and secreted by pulmonary alveolar type II epithelial cells (type II cells). It passes through the alveolar lining fluid and adsorbs to the air-liquid interface. The process from secretion to adsorption is not yet entirely understood. To acquire a detailed understanding of this process, we used multiple observations of type II cells isolated from rat lungs under electron microscopy (EM) and confocal laser scanning microscopy (CLSM). Transmission EM observation demonstrated a loosening process of the intracellular lamellar bodies from the inside to the outside of the cell. Scanning EM observation revealed bubble-like protrusions from the cell surface, and differential interference contrast microscopy illustrated the protrusions expanding with time. CLSM observation with FM 1-43, a fluorescent membrane probe, revealed that the bubble-like protrusions were composed of phospholipids. Thus, we have demonstrated that isolated rat type II cells protrude intracellular lamellar bodies by forming bubble-like structures, possibly enabling them to adsorb to the air-liquid interface directly. These observations suggest a new mechanism for surfactant secretion from type II cells.


Asunto(s)
Extensiones de la Superficie Celular/ultraestructura , Alveolos Pulmonares/ultraestructura , Surfactantes Pulmonares/metabolismo , Mucosa Respiratoria/ultraestructura , Animales , Separación Celular , Extensiones de la Superficie Celular/metabolismo , Masculino , Microscopía Confocal , Microscopía Electrónica de Rastreo , Microscopía Electrónica de Transmisión , Alveolos Pulmonares/metabolismo , Ratas , Ratas Sprague-Dawley , Mucosa Respiratoria/metabolismo
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