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1.
J Antimicrob Chemother ; 77(9): 2414-2418, 2022 08 25.
Artículo en Inglés | MEDLINE | ID: mdl-35786775

RESUMEN

BACKGROUND: There is no comprehensive study on PAM-like MBLs. OBJECTIVES: Our aim was to characterize novel B3 MBL variants, PAM-2 and PAM-3, from Pseudomonas tohonis clinical isolates. METHODS: We evaluated the antimicrobial susceptibility and the MBL gene composition of three novel P. tohonis clinical isolates identified at a Japanese hospital, using the broth microdilution method and WGS, respectively. We characterized the PAM-2 and PAM-3 proteins using recombinant protein expression and biochemical evaluations. RESULTS: Low carbapenem MICs (meropenem MIC = 0.125-1 mg/L) were observed for all three P. tohonis isolates; however, the isolates produced MBLs. We identified blaPAM-2 and blaPAM-3 as potential genes, belonging to a novel subclass of B3 MBLs. Their genomic sequence was similar to that of blaPAM-1 from Pseudomonas alcaligenes. PAM-2 and PAM-3 comprised 287 amino acids and exhibited 90% amino acid identity with PAM-1, 73% identity with POM-1 from Pseudomonas otitidis and 61% identity with L1 from Stenotrophomonas maltophilia. Biochemical evaluations of recombinant PAM-2 and PAM-3 revealed similar kcat/Km ratios and demonstrated catalytic activity against all the tested ß-lactams, except for aztreonam. In addition, the kcat/Km ratio for imipenem was 40-fold lower than that for meropenem. CONCLUSIONS: P. tohonis harbours a species-specific PAM-family MBL gene. This enzyme has higher hydrolytic activity against meropenem compared with that against imipenem.


Asunto(s)
Infecciones por Pseudomonas , beta-Lactamasas , Antibacterianos/farmacología , Humanos , Imipenem/farmacología , Meropenem/farmacología , Pruebas de Sensibilidad Microbiana , Pseudomonas/genética , Pseudomonas aeruginosa/genética , beta-Lactamasas/metabolismo
2.
Artículo en Inglés | MEDLINE | ID: mdl-33431411

RESUMEN

The diazabicyclooctane (DBO) inhibitor avibactam (AVI) reversibly inactivates most serine ß-lactamases, including the CTX-M ß-lactamases. Currently, more than 230 unique CTX-M members distributed in five clusters with less than 5% amino acid sequence divergence within each group have been described. Recently, a variant named CTX-M-151 was isolated from a Salmonella enterica subsp. enterica serovar Choleraesuis strain in Japan. This variant possesses a low degree of amino acid identity with the other CTX-Ms (63.2% to 69.7% with respect to the mature proteins), and thus it may represent a new subgroup within the family. CTX-M-151 hydrolyzes ceftriaxone better than ceftazidime (kcat/Km values 6,000-fold higher), as observed with CTX-Ms. CTX-M-151 is well inhibited by mechanism-based inhibitors like clavulanic acid (inactivation rate [kinact]/inhibition constant [Ki ] = 0.15 µM-1 · s-1). For AVI, the apparent inhibition constant (Kiapp), 0.4 µM, was comparable to that of KPC-2; the acylation rate (k2/K) (37,000 M-1 · s-1) was lower than that for CTX-M-15, while the deacylation rate (koff) (0.0015 s-1) was 2- to 14-fold higher than those of other class A ß-lactamases. The structure of the CTX-M-151/AVI complex (1.32 Å) reveals that AVI adopts a chair conformation with hydrogen bonds between the AVI carbamate and Ser70 and Ser237 at the oxyanion hole. Upon acylation, the side chain of Lys73 points toward Ser130, which is associated with the protonation of Glu166, supporting the role of Lys73 in the proton relay pathway and Glu166 as the general base in deacylation. To our knowledge, this is the first chromosomally encoded CTX-M in Salmonella Choleraesuis that shows similar hydrolytic preference toward cefotaxime (CTX) and ceftriaxone (CRO) to that toward ceftazidime (CAZ).


Asunto(s)
Cefotaxima , Escherichia coli , Antibacterianos/farmacología , Compuestos de Azabiciclo , Ceftazidima/farmacología , Escherichia coli/genética , Japón , Pruebas de Sensibilidad Microbiana , Salmonella , Inhibidores de beta-Lactamasas/farmacología , beta-Lactamasas/genética
3.
J Biol Chem ; 291(9): 4343-55, 2016 Feb 26.
Artículo en Inglés | MEDLINE | ID: mdl-26702058

RESUMEN

A bacterial collagen-like protein Scl2 has been developed as a recombinant collagen model system to host human collagen ligand-binding sequences, with the goal of generating biomaterials with selective collagen bioactivities. Defined binding sites in human collagen for integrins, fibronectin, heparin, and MMP-1 have been introduced into the triple-helical domain of the bacterial collagen and led to the expected biological activities. The modular insertion of activities is extended here to the discoidin domain receptors (DDRs), which are collagen-activated receptor tyrosine kinases. Insertion of the DDR-binding sequence from human collagen III into bacterial collagen led to specific receptor binding. However, even at the highest testable concentrations, the construct was unable to stimulate DDR autophosphorylation. The recombinant collagen expressed in Escherichia coli does not contain hydroxyproline (Hyp), and complementary synthetic peptide studies showed that replacement of Hyp by Pro at the critical Gly-Val-Met-Gly-Phe-Hyp position decreased the DDR-binding affinity and consequently required a higher concentration for the induction of receptor activation. The ability of the recombinant bacterial collagen to bind the DDRs without inducing kinase activation suggested it could interfere with the interactions between animal collagen and the DDRs, and such an inhibitory role was confirmed in vitro and with a cell migration assay. This study illustrates that recombinant collagen can complement synthetic peptides in investigating structure-activity relationships, and this system has the potential for the introduction or inhibition of specific biological activities.


Asunto(s)
Proteínas Bacterianas/metabolismo , Colágeno Tipo III/metabolismo , Colágeno/metabolismo , Megacariocitos/metabolismo , Modelos Moleculares , Proteínas Tirosina Quinasas Receptoras/metabolismo , Receptores Mitogénicos/metabolismo , Proteínas Recombinantes de Fusión/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Sitios de Unión , Movimiento Celular , Células Cultivadas , Colágeno/química , Colágeno/genética , Colágeno Tipo III/química , Colágeno Tipo III/genética , Receptores con Dominio Discoidina , Sangre Fetal/citología , Células HEK293 , Humanos , Proteínas Inmovilizadas/química , Proteínas Inmovilizadas/genética , Proteínas Inmovilizadas/metabolismo , Ligandos , Megacariocitos/citología , Fragmentos de Péptidos/química , Fragmentos de Péptidos/genética , Fragmentos de Péptidos/metabolismo , Ingeniería de Proteínas , Dominios y Motivos de Interacción de Proteínas , Proteínas Tirosina Quinasas Receptoras/antagonistas & inhibidores , Proteínas Tirosina Quinasas Receptoras/química , Proteínas Tirosina Quinasas Receptoras/genética , Receptores Mitogénicos/antagonistas & inhibidores , Receptores Mitogénicos/química , Receptores Mitogénicos/genética , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Streptococcus pyogenes
4.
BMC Microbiol ; 15: 41, 2015 Feb 21.
Artículo en Inglés | MEDLINE | ID: mdl-25881168

RESUMEN

BACKGROUND: We investigate the evolving molecular epidemiology of metallo-ß-lactamase (MBL)-producing Pseudomonas aeruginosa isolates collected in a 100 institution, nationwide surveillance study in Japan from 2004 to 2006. RESULTS: MBL-producers were detected in 23/996 isolates (2.3%) in 2004 and 21/992 (2.1%) in 2006. Antimicrobial resistance (specifically, carbapenem resistance) rates between two periods did not differ significantly. MBL-producers were more prevalent in urinary tract isolates. bla IMP-1 group was the most predominant (38 isolates, 80%), followed by 3 bla IMP-7, 2 bla IMP-11 group, and 1 bla VIM-1. All MBL genes were identified in 16 different class 1 integrons, most of which were novel to INTEGRALL database. A total of 17 isolates of sequence type (ST) 235, a recognized worldwide drug-resistant lineage, were distributed in 5 geographic regions across Japan. ST235 isolates included a sublineage associated with In113-like integron. ST357 was identified in 14 isolates, 9 of which harboring a sole bla IMP-1 gene cassette (In994) were recovered from Chugoku region in 2004. ST357 isolates with bla IMP-11 group or ST235 with bla IMP-7 emerged in 2006. We also report for the first time the presence of novel fosI gene cassette in strains other than Mycobacterium spp. CONCLUSIONS: Our data give an important "snapshot" of the molecular characteristics and dynamics of MBL-producing lineages in P. aeruginosa in Japan. The significant association of specific genotypes and integrons implies that dissemination and transmission of the preexisting resistant lineage, rather than horizontal gene transfer in situ, might largely explain their endemicity.


Asunto(s)
Integrones , Infecciones por Pseudomonas/epidemiología , Pseudomonas aeruginosa/genética , Infecciones Urinarias/epidemiología , Resistencia betalactámica/genética , beta-Lactamasas/genética , Antibacterianos/farmacología , Carbapenémicos/farmacología , ADN Bacteriano/genética , Electroforesis en Gel de Campo Pulsado , Monitoreo Epidemiológico , Expresión Génica , Genotipo , Japón/epidemiología , Pruebas de Sensibilidad Microbiana , Epidemiología Molecular , Infecciones por Pseudomonas/tratamiento farmacológico , Infecciones por Pseudomonas/microbiología , Pseudomonas aeruginosa/efectos de los fármacos , Pseudomonas aeruginosa/enzimología , Pseudomonas aeruginosa/aislamiento & purificación , Infecciones Urinarias/tratamiento farmacológico , Infecciones Urinarias/microbiología , beta-Lactamasas/metabolismo
5.
J Infect Chemother ; 21(2): 148-51, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25444674

RESUMEN

Avibactam displays potent inhibition of extended-spectrum, AmpC, KPC and some OXA ß-lactamases. We examined the combinations of avibactam with ceftazidime, ceftaroline and aztreonam by the broth microdilution method against Gram-negative bacteria harboring molecularly-characterized ß-lactamase genes collected in Toho University, Japan. Bacterial isolates included: Ambler class A ß-lactamase-producing Enterobacteriaceae (n = 26); class C ß-lactamase-producing Enterobacteriaceae (n = 9) and class D ß-lactamase-producing Acinetobacter baumannii (n = 9) and Enterobacteriaceae (n = 3). Ceftazidime-avibactam, ceftaroline-avibactam ands aztreonam-avibactam were active against the strains with an extended-spectrum ß-lactamase (ESBL) or AmpC enzymes, but combination with avibactam did not reduce ß-lactam MICs against A. baumannii with OXA ß-lactamases including carbapenemases, such as OXA-40 and -69.


Asunto(s)
Antibacterianos/farmacología , Compuestos de Azabiciclo/farmacología , Bacterias Gramnegativas/efectos de los fármacos , Infecciones por Bacterias Gramnegativas/microbiología , beta-Lactamas/farmacología , Farmacorresistencia Bacteriana Múltiple , Bacterias Gramnegativas/enzimología , Infecciones por Bacterias Gramnegativas/epidemiología , Humanos , Japón/epidemiología , Pruebas de Sensibilidad Microbiana , beta-Lactamasas
6.
J Infect Chemother ; 20(11): 735-7, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25103169

RESUMEN

Pathogens encoding extended-spectrum ß-lactamase (ESBL) genes represent a threat for failure of empirical antibiotic therapy and are associated with high mortality, morbidity and expenses. We examined surface water in Dhaka, capital of Bangladesh and isolated ESBL-producing Escherichia coli, Klebsiella pneumoniae and Enterobacter cloacae, suggesting the potential role of water for the dissemination and transmission of resistant genes among microorganisms. E. coli found most prevalent among isolated Enterobacteriaceae from environmental water. Molecular and genetic analysis revealed CTX-M-type and SHV-type ESBL genes in isolates that may influence the spread of multidrug resistant pathogenic bacteria causing human and animal infections in Bangladesh.


Asunto(s)
Enterobacter cloacae/aislamiento & purificación , Escherichia coli/aislamiento & purificación , Klebsiella pneumoniae/aislamiento & purificación , Microbiología del Agua , beta-Lactamasas/biosíntesis , Bangladesh , Enterobacter cloacae/genética , Enterobacter cloacae/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Klebsiella pneumoniae/genética , Klebsiella pneumoniae/metabolismo , beta-Lactamasas/genética
7.
J Clin Microbiol ; 51(6): 1692-8, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23515543

RESUMEN

Infection from fluoroquinolone-resistant Enterobacteriaceae is an increasing health problem worldwide. In the present study, we developed a pyrosequencing-based high-throughput method for analyzing the nucleotide sequence of the quinolone resistance-determining regions (QRDRs) of gyrA and parC. By using this method, we successfully determined the QRDR sequences of 139 out of 140 clinical Escherichia coli isolates, 28% of which were nonsusceptible to ciprofloxacin. Sequence results obtained by the pyrosequencing method were in complete agreement with those obtained by the Sanger method. All fluoroquinolone-resistant isolates (n = 35; 25%) contained mutations leading to three or four amino acid substitutions in the QRDRs. In contrast, all isolates lacking a mutation in the QRDR (n = 81; 57%) were susceptible to ciprofloxacin, levofloxacin, and nalidixic acid. The qnr determinants, namely, the qnrA, qnrB, and qnrS genes, were not detected in the isolates, and the aac(6')-Ib-cr gene was detected in 2 (1.4%) of the isolates. Multilocus sequence typing of 34 randomly selected isolates revealed that sequence type 131 (ST131) (n = 7; 20%) is the most prevalent lineage and is significantly resistant to quinolones (P < 0.01). The genetic background of quinolone-susceptible isolates seemed more diverse, and interestingly, neighboring STs of ST131 in the phylogenetic tree were all susceptible to ciprofloxacin. In conclusion, our investigation reveals the relationship between fluoroquinolone resistance caused by mutations of QRDRs and the population structure of clinical extraintestinal E. coli isolates. This high-throughput method for analyzing QRDR mutations by pyrosequencing is a powerful tool for epidemiological studies of fluoroquinolone resistance in bacteria.


Asunto(s)
Antibacterianos/farmacología , Girasa de ADN/genética , Topoisomerasa de ADN IV/genética , Farmacorresistencia Bacteriana , Infecciones por Escherichia coli/microbiología , Escherichia coli/efectos de los fármacos , Quinolonas/farmacología , Análisis por Conglomerados , Escherichia coli/clasificación , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Infecciones por Escherichia coli/epidemiología , Genotipo , Humanos , Japón/epidemiología , Epidemiología Molecular , Tipificación de Secuencias Multilocus , Mutación Missense , Filogenia
8.
J Infect Chemother ; 19(5): 992-5, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23233082

RESUMEN

We evaluated the efficacy of ethylenediamine-N,N,N',N'-tetraacetic acid, disodium calcium salt (Ca-EDTA), as an inhibitor for New Delhi metallo-ß-lactamase-1 (NDM-1) in vitro antibiotic susceptibility and in a mouse model of sepsis caused by Escherichia coli. Ca-EDTA drastically reduced the MICs of carbapenems for all NDM-producing bacteria [imipenem (IPM) ≤1-2 µg/ml; meropenem (MEPM) ≤1-4 µg/ml]. In the neutropenic murine model of sepsis, the bacterial burden was further reduced by combination therapy using imipenem/cilastatin sodium (IPM/CS) and Ca-EDTA to 2.3 × 10(3) CFU/liver, compared with 2.9 × 10(4) CFU/liver for IPM/CS alone. These data demonstrated the possibility of Ca-EDTA for clinical applications. In our understanding, this is the first report examining the effect of Ca-EDTA on a mouse sepsis model caused by NDM-1-producing bacteria.


Asunto(s)
Antibacterianos/uso terapéutico , Ácido Edético/farmacología , Infecciones por Escherichia coli/tratamiento farmacológico , Escherichia coli/efectos de los fármacos , Imipenem/farmacología , Sepsis/tratamiento farmacológico , beta-Lactamasas/biosíntesis , Animales , Antibacterianos/farmacología , Carga Bacteriana/efectos de los fármacos , Recuento de Colonia Microbiana , Modelos Animales de Enfermedad , Escherichia coli/enzimología , Infecciones por Escherichia coli/microbiología , Ratones , Pruebas de Sensibilidad Microbiana , Sepsis/microbiología , Resistencia betalactámica
9.
J Biol Chem ; 286(3): 2041-6, 2011 Jan 21.
Artículo en Inglés | MEDLINE | ID: mdl-21071452

RESUMEN

The hereditary bone disorder osteogenesis imperfecta is often caused by missense mutations in type I collagen that change one Gly residue to a larger residue and that break the typical (Gly-Xaa-Yaa)(n) sequence pattern. Site-directed mutagenesis in a recombinant bacterial collagen system was used to explore the effects of the Gly mutation position and of the identity of the residue replacing Gly in a homogeneous collagen molecular population. Homotrimeric bacterial collagen proteins with a Gly-to-Arg or Gly-to-Ser replacement formed stable triple-helix molecules with a reproducible 2 °C decrease in stability. All Gly replacements led to a significant delay in triple-helix folding, but a more dramatic delay was observed when the mutation was located near the N terminus of the triple-helix domain. This highly disruptive mutation, close to the globular N-terminal trimerization domain where folding is initiated, is likely to interfere with triple-helix nucleation. A positional effect of mutations was also suggested by trypsin sensitivity for a Gly-to-Arg replacement close to the triple-helix N terminus but not for the same replacement near the center of the molecule. The significant impact of the location of a mutation on triple-helix folding and conformation could relate to the severe consequences of mutations located near the C terminus of type I and type III collagens, where trimerization occurs and triple-helix folding is initiated.


Asunto(s)
Sustitución de Aminoácidos , Proteínas Bacterianas/química , Colágeno/química , Glicina/química , Mutación Missense , Pliegue de Proteína , Streptococcus pyogenes/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Colágeno/genética , Colágeno/metabolismo , Glicina/genética , Glicina/metabolismo , Estructura Cuaternaria de Proteína , Estructura Secundaria de Proteína , Streptococcus pyogenes/genética , Streptococcus pyogenes/metabolismo
10.
J Biol Chem ; 286(20): 17512-20, 2011 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-21454493

RESUMEN

Collagen triple helices fold slowly and inefficiently, often requiring adjacent globular domains to assist this process. In the Streptococcus pyogenes collagen-like protein Scl2, a V domain predicted to be largely α-helical, occurs N-terminal to the collagen triple helix (CL). Here, we replace this natural trimerization domain with a de novo designed, hyperstable, parallel, three-stranded, α-helical coiled coil (CC), either at the N terminus (CC-CL) or the C terminus (CL-CC) of the collagen domain. CD spectra of the constructs are consistent with additivity of independently and fully folded CC and CL domains, and the proteins retain their distinctive thermal stabilities, CL at ∼37 °C and CC at >90 °C. Heating the hybrid proteins to 50 °C unfolds CL, leaving CC intact, and upon cooling, the rate of CL refolding is somewhat faster for CL-CC than for CC-CL. A construct with coiled coils on both ends, CC-CL-CC, retains the ∼37 °C thermal stability for CL but shows less triple helix at low temperature and less denaturation at 50 °C. Most strikingly however, in CC-CL-CC, the CL refolds slower than in either CC-CL or CL-CC by almost two orders of magnitude. We propose that a single CC promotes folding of the CL domain via nucleation and in-register growth from one end, whereas initiation and growth from both ends in CC-CL-CC results in mismatched registers that frustrate folding. Bioinformatics analysis of natural collagens lends support to this because, where present, there is generally only one coiled-coil domain close to the triple helix, and it is nearly always N-terminal to the collagen repeat.


Asunto(s)
Proteínas Bacterianas/química , Colágeno/química , Pliegue de Proteína , Streptococcus pyogenes/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Colágeno/genética , Colágeno/metabolismo , Calor , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Streptococcus pyogenes/genética , Streptococcus pyogenes/metabolismo
11.
J Infect Chemother ; 18(4): 522-8, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22327516

RESUMEN

We conducted an epidemiological study concerning carbapenem-non-susceptible clinical isolates of Acinetobacter spp. in Japan by molecular procedures including carbapenemase gene identification and amplified ribosomal DNA restriction analysis. Among 598 clinically isolated Acinetobacter spp. in 2007, 27 (4.5%) were non-susceptible to carbapenems. Most carbapenem-non-susceptible Acinetobacter baumannii (13/14) belonged to clonal complex (CC) 92, harbored bla (OXA-51-like) genes, including novel bla (OXA-206), downstream of ISAba1, and were recovered mainly from the Kanto region. Carbapenem-non-susceptible A. baumannii CC92 isolates were further divided by pulsed-field gel electrophoresis into two groups, one of which was characterized by the presence of bla (OXA-23). One A. baumannii CC276 isolate carried bla (IMP-1) and bla (OXA-58). Almost all non-baumannii Acinetobacter isolates (12/13), including Acinetobacter pittii (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis (formerly Acinetobacter genomic species 13TU), produced IMP-type metallo-ß-lactamases, and were recovered from various regions in Japan. This is the first report describing the nationwide molecular epidemiology of carbapenem-non-susceptible Acinetobacter spp. with genomic species-level identification in Japan.


Asunto(s)
Infecciones por Acinetobacter/microbiología , Acinetobacter baumannii/efectos de los fármacos , Acinetobacter baumannii/genética , Proteínas Bacterianas/biosíntesis , Carbapenémicos/farmacología , beta-Lactamasas/biosíntesis , Acinetobacter/efectos de los fármacos , Acinetobacter/enzimología , Acinetobacter/genética , Infecciones por Acinetobacter/epidemiología , Acinetobacter baumannii/enzimología , Proteínas Bacterianas/genética , Farmacorresistencia Bacteriana Múltiple , Electroforesis en Gel de Campo Pulsado , Humanos , Japón/epidemiología , Pruebas de Sensibilidad Microbiana , Epidemiología Molecular , Tipificación de Secuencias Multilocus , Reacción en Cadena de la Polimerasa , Resistencia betalactámica , beta-Lactamasas/genética
12.
Chem Commun (Camb) ; 51(71): 13658-61, 2015 Sep 14.
Artículo en Inglés | MEDLINE | ID: mdl-26225721

RESUMEN

A tough and thin double-network gel membrane containing amino acid ionic liquids as a CO2 carrier exhibited superior CO2 permeability and stability under pressurized conditions.


Asunto(s)
Aminoácidos/química , Dióxido de Carbono/metabolismo , Líquidos Iónicos/química , Membranas/química , Dióxido de Carbono/química , Geles/química , Iones , Permeabilidad
13.
Diagn Microbiol Infect Dis ; 80(2): 151-3, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25056827

RESUMEN

The aim of this study was to confirm the daptomycin (DAP) susceptibility of bacteria isolated before the launch of DAP in Japan. DAP showed good activity against all 833 isolates (MIC90 = 0.25-0.5 mg/L for staphylococci, 0.5-4 mg/L for enterococci, and 0.25-0.5 mg/L for streptococci). This is the first report of the in vitro activity of DAP against Gram-positive cocci, including methicillin-resistant Staphylococcus aureus and enterococci, isolated in Japan.


Asunto(s)
Antibacterianos/farmacología , Daptomicina/farmacología , Cocos Grampositivos/efectos de los fármacos , Infecciones por Bacterias Grampositivas/microbiología , Cocos Grampositivos/aislamiento & purificación , Hospitales Universitarios , Humanos , Japón , Pruebas de Sensibilidad Microbiana
14.
Protein Sci ; 19(4): 775-85, 2010 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-20162611

RESUMEN

Proper folding of the (Gly-Xaa-Yaa)(n) sequence of animal collagens requires adjacent N- or C-terminal noncollagenous trimerization domains which often contain coiled-coil or beta sheet structure. Collagen-like proteins have been found recently in a number of bacteria, but little is known about their folding mechanism. The Scl2 collagen-like protein from Streptococcus pyogenes has an N-terminal globular domain, designated V(sp), adjacent to its triple-helix domain. The V(sp) domain is required for proper refolding of the Scl2 protein in vitro. Here, recombinant V(sp) domain alone is shown to form trimers with a significant alpha-helix content and to have a thermal stability of T(m) = 45 degrees C. Examination of a new construct shows that the V(sp) domain facilitates efficient in vitro refolding only when it is located N-terminal to the triple-helix domain but not when C-terminal to the triple-helix domain. Fusion of the V(sp) domain N-terminal to a heterologous (Gly-Xaa-Yaa)(n) sequence from Clostridium perfringens led to correct folding and refolding of this triple-helix, which was unable to fold into a triple-helical, soluble protein on its own. These results suggest that placement of a functional trimerization module adjacent to a heterologous Gly-Xaa-Yaa repeating sequence can lead to proper folding in some cases but also shows specificity in the relative location of the trimerization and triple-helix domains. This information about their modular nature can be used in the production of novel types of bacterial collagen for biomaterial applications.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Portadoras/química , Colágeno/química , Streptococcus pyogenes/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Rastreo Diferencial de Calorimetría , Proteínas Portadoras/metabolismo , Dimerización , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Pliegue de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Relación Estructura-Actividad
15.
Biomaterials ; 31(10): 2755-61, 2010 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-20056274

RESUMEN

A range of bacteria have been shown to contain collagen-like sequences that form triple-helical structures. Some of these proteins have been shown to form triple-helical motifs that are stable around body temperature without the inclusion of hydroxyproline or other secondary modifications to the protein sequence. This makes these collagen-like proteins particularly suitable for recombinant production as only a single gene product and no additional enzyme needs to be expressed. In the present study, we have examined the cytotoxicity and immunogenicity of the collagen-like domain from Streptococcus pyogenes Scl2 protein. These data show that the purified, recombinant collagen-like protein is not cytotoxic to fibroblasts and does not elicit an immune response in SJL/J and Arc mice. The freeze dried protein can be stabilised by glutaraldehyde cross-linking giving a material that is stable at >37 degrees C and which supports cell attachment while not causing loss of viability. These data suggest that bacterial collagen-like proteins, which can be modified to include specific functional domains, could be a useful material for medical applications and as a scaffold for tissue engineering.


Asunto(s)
Proteínas Bacterianas/farmacología , Materiales Biocompatibles/farmacología , Colágeno/farmacología , Reactivos de Enlaces Cruzados/farmacología , Streptococcus pyogenes/metabolismo , Animales , Proteínas Bacterianas/química , Proteínas Bacterianas/inmunología , Proteínas Bacterianas/aislamiento & purificación , Adhesión Celular/efectos de los fármacos , Muerte Celular/efectos de los fármacos , Línea Celular , Movimiento Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Colágeno/química , Colágeno/inmunología , Colágeno/aislamiento & purificación , Fibroblastos/citología , Fibroblastos/efectos de los fármacos , Glutaral/farmacología , Inmunización , Ratones , Estabilidad Proteica/efectos de los fármacos , Estructura Terciaria de Proteína , Solubilidad/efectos de los fármacos
16.
Protein Sci ; 18(6): 1241-51, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19472339

RESUMEN

A number of bacterial collagen-like proteins with Gly as every third residue and a high Pro content have been observed to form stable triple-helical structures despite the absence of hydroxyproline (Hyp). Here, the high yield cold-shock expression system is used to obtain purified recombinant collagen-like protein (V-CL) from Streptococcus pyogenes containing an N-terminal globular domain V followed by the collagen triple-helix domain CL and the modified construct with two tandem collagen domains V-CL-CL. Both constructs and their isolated collagenous domains form stable triple-helices characterized by very sharp thermal transitions at 35-37 degrees C and by high values of calorimetric enthalpy. Procedures for the formation of collagen SLS crystallites lead to parallel arrays of in register V-CL-CL molecules, as well as centrosymmetric arrays of dimers joined at their globular domains. At neutral pH and high concentrations, the bacterial constructs all show a tendency towards aggregation. The isolated collagen domains, CL and CL-CL, form units of diameter 4-5 nm which bundle together and twist to make larger fibrillar structures. Thus, although this S. pyogenes collagen-like protein is a cell surface protein with no indication of participation in higher order structure, the triple-helix domain has the potential of forming fibrillar structures even in the absence of hydroxyproline. The formation of fibrils suggests bacterial collagen proteins may be useful for biomaterials and tissue engineering applications.


Asunto(s)
Colágeno/química , Streptococcus pyogenes/metabolismo , Rastreo Diferencial de Calorimetría , Colágeno/biosíntesis , Colágeno/ultraestructura , Pliegue de Proteína , Estructura Secundaria de Proteína , Termodinámica
17.
Appl Environ Microbiol ; 69(2): 933-7, 2003 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-12571014

RESUMEN

A practical enzymatic synthesis of a doubly chiral key compound, (4R,6R)-4-hydroxy-2,2,6-trimethylcyclohexanone, starting from the readily available 2,6,6-trimethyl-2-cyclohexen-1,4-dione is described. Chirality is first introduced at the C-6 position by a stereoselective enzymatic hydrogenation of the double bond using old yellow enzyme 2 of Saccharomyces cerevisiae, expressed in Escherichia coli, as a biocatalyst. Thereafter, the carbonyl group at the C-4 position is reduced selectively and stereospecifically by levodione reductase of Corynebacterium aquaticum M-13, expressed in E. coli, to the corresponding alcohol. Commercially available glucose dehydrogenase was also used for cofactor regeneration in both steps. Using this two-step enzymatic asymmetric reduction system, 9.5 mg of (4R,6R)-4-hydroxy-2,2,6-trimethylcyclohexanone/ml was produced almost stoichiometrically, with 94% enantiomeric excess in the presence of glucose, NAD(+), and glucose dehydrogenase. To our knowledge, this is the first report of the application of S. cerevisiae old yellow enzyme for the production of a useful compound.


Asunto(s)
Ciclohexanonas/química , Ciclohexanonas/metabolismo , Escherichia coli/enzimología , NADPH Deshidrogenasa/genética , NADPH Deshidrogenasa/metabolismo , Saccharomyces cerevisiae/enzimología , Escherichia coli/genética , Glucosa 1-Deshidrogenasa , Glucosa Deshidrogenasas/metabolismo , Saccharomyces cerevisiae/genética , Estereoisomerismo , Especificidad por Sustrato
18.
Biosci Biotechnol Biochem ; 66(12): 2651-7, 2002 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-12596862

RESUMEN

Microorganisms were screened for ones that reduced 3,5,5-trimethyl-2-cyclohexene-1,4-dione (ketoisophorone; KIP), and several strains were found to produce (6R)-2,2,6-trimethylcyclohexane-1,4-dione (levodione). The enzyme catalyzing the reduction of the C=C bond of KIP to yield (6R)-levodione was isolated from Candida macedoniensis AKU4588. The results of primary structural analysis and its enzymatic properties suggested that the enzyme might be an Old Yellow Enzyme family protein.


Asunto(s)
Candida/enzimología , Ciclohexanonas/química , Ciclohexanonas/metabolismo , NADPH Deshidrogenasa/metabolismo , Secuencia de Aminoácidos , Concentración de Iones de Hidrógeno , Datos de Secuencia Molecular , Peso Molecular , NADPH Deshidrogenasa/química , NADPH Deshidrogenasa/aislamiento & purificación , Oxidación-Reducción , Subunidades de Proteína , Alineación de Secuencia , Análisis de Secuencia de Proteína , Homología de Secuencia de Aminoácido , Estereoisomerismo , Especificidad por Sustrato , Temperatura
19.
Biosci Biotechnol Biochem ; 68(7): 1481-8, 2004 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-15277752

RESUMEN

Exiguobacterium sp. F42 was screened as a producer of an enzyme catalyzing the NADPH-dependent stereoselective reduction of ethyl 3-oxo-3-(2-thienyl)propanoate (KEES) to ethyl (S)-3-hydroxy-3-(2-thienyl)propanoate ((S)-HEES). (S)-HEES is a key intermediate for the synthesis of (S)-duloxetine, a potent inhibitor of the serotonin and norepinephrine uptake carriers. The responsible enzyme (KEES reductase) was partially purified, and the gene encoding KEES reductase was cloned and sequenced via an inverse PCR approach. Sequence analysis of the gene for KEES reductase revealed that the enzyme was a member of the short chain dehydrogenase/reductase family. The probable NADPH-interacting site and 3 catalytic residues (Ser-Tyr-Lys) were fully conserved. The gene was highly expressed in Escherichia coli, and the gene product was purified to homogeneity from the recombinant E. coli by simpler procedures than from the original host. The molecular mass of the purified enzyme was 27,500 as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and 55,000 as determined by gel filtration chromatography. Our results show that this enzyme can be used for the practical production of (S)-HEES.


Asunto(s)
Bacillaceae/enzimología , Oxidorreductasas/genética , Propionatos/metabolismo , Tiofenos/metabolismo , Secuencia de Aminoácidos , Bacillaceae/genética , Secuencia de Bases , Cromatografía en Gel , Clonación Molecular , ADN Bacteriano/química , ADN Bacteriano/genética , Electroforesis en Gel de Poliacrilamida , Escherichia coli/genética , Datos de Secuencia Molecular , Peso Molecular , Oxidorreductasas/metabolismo , Reacción en Cadena de la Polimerasa
20.
J Biol Chem ; 278(21): 19387-95, 2003 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-12621044

RESUMEN

The (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase (LVR) of the soil isolate bacterium Corynebacterium aquaticum M-13 is a NAD(H)-linked enzyme that catalyzes reversible oxidoreduction between (4R)-hydroxy-(6R)-2,2,6-trimethylcyclohexanone (actinol) and levodione. Here the crystal structure of a ternary complex of LVR with NADH and its inhibitor 2-methyl-2,4-pentanediol has been determined by molecular replacement and refined at 1.6-A resolution with a crystallographic R factor of 0.199. The overall structure is similar to those of other short-chain alcohol dehydrogenase/reductase enzymes. The positions of NADH and 2-methyl-2,4-pentanediol indicate the binding site of the substrate and identify residues that are likely to be important in the catalytic reaction. Modeling of the substrate binding in the active site suggests that the specificity of LVR is determined by electrostatic interactions between the negatively charged surface of Glu-103 of LVR and the positively charged surface on the re side of levodione. Mutant LVR enzymes in which Glu-103 is substituted with alanine (E103A), glutamine (E103Q), asparagines (E103N), or aspartic acid (E103D) show a 2-6-fold increase in Km values as compared with wild-type LVR and a much lower enantiomeric excess of the reaction products (60%) than the wild-type enzyme (95%). Together, these data indicate that Glu-103 has an important role in determining the stereospecificity of LVR.


Asunto(s)
Corynebacterium/enzimología , Oxidorreductasas/química , Oxidorreductasas/metabolismo , Sitios de Unión , Catálisis , Dicroismo Circular , Cristalización , Cristalografía , Inhibidores Enzimáticos/metabolismo , Escherichia coli/genética , Expresión Génica , Ácido Glutámico , Glicoles/metabolismo , Enlace de Hidrógeno , Modelos Moleculares , Estructura Molecular , Mutación , NAD/metabolismo , Oxidorreductasas/genética , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Electricidad Estática , Estereoisomerismo , Relación Estructura-Actividad , Especificidad por Sustrato
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