Transcriptome sequencing and metabolome analysis of food habits domestication from live prey fish to artificial diets in mandarin fish (Siniperca chuatsi).

BACKGROUND: As economical traits, food habits domestication can reduce production cost in aquaculture. However, the molecular mechanism underlying food habits domestication has remained elusive. Mandarin fish (Siniperca chuatsi) only feed on live prey fish and refuse artificial diets. In the present study, we domesticated mandarin fish to feed on artificial diets. The two groups were obtained, the fish did not eat artificial diets or ate artificial diets during all of the three domestication processes, named Group W or X, respectively. RESULTS: Using transcriptome and metabolome analysis, we investigated the differentially expressed genes and metabolites between the two groups, and found three common pathways related to food habit domestication, including retinol metabolism, glycerolipid metabolism, and biosynthesis of unsaturated fatty acids pathways. Furthermore, the western blotting and bisulfite sequencing PCR analysis were performed. The gene expression of TFIIF and histone methyltransferase ezh1 were significantly increased and decreased in the fish of Group X, respectively. The total DNA methylation levels of TFIIF gene and tri-methylation of histone H3 at lysine 27 (H3K27me3) were significantly higher and lower in the fish of Group X, respectively. CONCLUSION: It was speculated that mandarin fish which could feed on artificial diets, might be attributed to the lower expression of ezh1, resulting in the decreased level of H3K27me3 and increased level of DNA methylation of TFIIF gene. The high expression of TFIIF gene might up-regulate the expression of genes in retinol metabolism, glycerolipid metabolism and glycerophosphoric metabolism pathways. Our study indicated the relationship between the methylation of DNA and histone and food habits domestication, which might be a novel molecular mechanism of food habits domestication in animals.

Occurrence, Distribution, and Exposure Risk of Organophosphate Esters in Street Dust from Chengdu, China.

Street dust samples were collected from 31 sampling sites in urban area of Chengdu. The distribution characters of OPEs were analyzed in line with functional districts and industrial layout of the city. The results showed that the detection frequency was tris(2-carboxyethyl) phosphine (TCEP), trichloropropyl phosphate (TCPP), triphenyl phosphate (TPhP), and tributoxyethyl phosphate (TBEP) (100%) > tris(2-ethylhexyl) phosphate (TEHP) (93.5%) > tri-n-butyl phosphate (TnBP) (83.9%) > tridichloropropyl phosphate (TDCPP) (74.2%). The ∑7OPEs concentrations ranged from 94.0 to 1484.6 ng/g (mean 512.9 ± 417.5 ng/g), and TBEP was the predominant pollutant, accounting for 27.9% of the ∑7OPEs. The highest concentrations were observed in the center, west, and northwest sides of the city. Besides, compared with outer area, the higher concentration in the 1st Ring Road reflected that emissions of OPEs might be associated with the population and consumption of commercial products. The correlations between monomers were statistically significant (p < 0.05) for TnBP/TCPP (p = 0.002), TCEP/TCPP (p = 0.026), and TCEP/TPhP (p = 0.033). The exposure level in adults was 0.11 ng/(kg bw day), and in children was 0.20 ng/(kg bw day) while hand-to-mouth was the primary mode of transmission. The Risk Quotients (RQs) of OPEs were 5.35 × 10-10-1.46 × 10-5 and 4.99 × 10-10-2.82 × 10-5 for adults and children respectively, with no potential risk.

The Causal Relationship Between Gastroesophageal Reflux Disease and Chronic Obstructive Pulmonary Disease: A Bidirectional Two-Sample Mendelian Randomization Study.

Background: Gastroesophageal reflux disease (GERD) and Chronic Obstructive Pulmonary Disease (COPD) often coexist and have been associated in observational studies. However, the real potential causal relationship between GERD and COPD is unknown and not well established. Methods: In this study, we conducted a bidirectional two-sample Mendelian randomization(MR) to estimate whether GERD and COPD are causal. The GERD genetic data is from summary level data of a genome-wide association (GWAS) meta-analysis (Ncases = 71,522, Ncontrol=26,079). The COPD GWAS are available from the FinnGen (Ncases=16,410, Ncontrol=283,589). MR-Egger regression, Weighted Median, and Inverse-variance weighted (IVW) were used for MR analysis from the R package "TwoSampleMR", and IVW was the dominant estimation method. Additionally, the MR pleiotropy residual sum and outlier (MR-PRESSO), Cochran Q statistic, and leave-one-out analysis were used to detect and correct for the effect of heterogeneity and horizontal pleiotropy. Results: MR analysis indicated that GERD was causally associated with an increased risk of COPD (IVW odds ratio (OR): 1.3760, 95% confidence interval (CI): 1.1565-1.6371, P=0.0003), and vice versa (IVW OR: 1.1728, 95% CI:1.0613-1.2961, P=0.0018). The analyses did not reveal any pleiotropy or heterogeneity. Conclusion: Our study revealed possible evidence for a bidirectional causal relationship between GERD and COPD. Implementing screening and preventive strategies for GERD in individuals with COPD, and vice versa, will be crucial in future healthcare management. Further studies are needed to elucidate the mechanisms underlying the causal relationship between GERD and COPD.

The 100 Most-Cited Articles in COVID-19 Vaccine Hesitancy Based on Web of Science: A Bibliometric Analysis.

Purpose: To perform a bibliometric analysis of the 100 most-cited articles (T100 articles) on COVID-19 vaccine hesitancy to characterize current trends. Methods: The data of the bibliometric analysis were retrieved from the Web of Science Core Collection (WoSCC) database on January 29, 2023, and the results were sorted in descending order by citations. Two researchers independently extracted the characteristics of the top 100 cited articles, including title, author, citations, publication year, institution, country, author keywords, Journal Cited Rank, and impact factor. Excel and VOSviewer were used to analyze the data. Results: The T100 articles ranged from 79 to 1125 citations, with a mean of 208.75. The T100 articles were contributed by 29 countries worldwide, of which the USA ranked first with 28 articles and 5417 citations. The T100 articles were published in 61 journals; the top three citations were VACCINES, NATURE MEDICINE, and EUROPEAN JOURNAL OF EPIDEMIOLOGY, and the number of citations was 2690, 1712, and 1644, respectively. Professor Sallam, M(n=4) from Jordan, is the author who participated in the most published articles. Catholic University of the Sacred Heart (n=8) had the most T100 articles. Conclusion: It is the first bibliometric analysis of the T100 articles in the field of COVID-19 vaccine hesitancy. We carefully analyzed and described the characteristics of these T100 articles, which provide ideas for further strengthening COVID-19 vaccination and fighting against the epidemic in the future.

Removal of Bisphenol A via peroxymonosulfate activation over graphite carbon nitride supported NiCx nanoclusters catalyst: Synergistic oxidation of high-valent nickel-oxo species and singlet oxygen.

In this work, a g-C3N4 supported NiCx nanoclusters catalyst (NiCx-CN) was developed, and its performance in activating peroxymonosulfate (PMS) was evaluated. Mechanism investigation stated that although singlet oxygen (1O2) was formed in the catalytic process, its contribution to BPA elimination was weeny. Interestingly, through the experiment with dimethyl sulfoxide as the probe, it was considered that the high-valent nickel-oxo species (Ni&+=O), generated after the interaction of NiCx-CN and PMS, was the dominating reactive oxygen species (ROS). Theoretical calculations (DFT) implied that NiCx-CN might lose electrons to generate high-valent Ni, which was consistent with the detection of Ni3+ on the surface of the used NiCx-CN. Besides, the prepared NiCx-CN showed advantages in resisting the interference of inorganic anions. Meanwhile, three BPA degradation routes had been proposed based on the transformation intermediates. This study will establish a new protocol for PMS activation using heterogeneous Ni-based catalysts to efficiently degrade organic pollutants via a nonradical mechanism.

Effects and regulatory pathway of proopinmelanocortin on feeding habit domestication in mandarin fish.

Proopiomelanocortin (POMC) is a hormone precursor, and has been reported to participate in domestication. However, its effects on feeding habit domestication in fish are poorly understood. Mandarin fish (Siniperca chuatsi) feeds solely on live prey fish since first-feeding. In the present study, the high expression of pomc in mandarin fish, both the pomc siRNA and MC4R inhibitor treatments increased the success rate of domestication from live prey fish to dead prey fish and food intake of dead prey fish, suggesting the role of pomc on the special feeding habit of live prey fish in mandarin fish. In addition, one c-fos binding site was identified in the region that from -1053 bp to -931 bp upstream of the transcription start site of pomc, and this region exhibited positive promoter activity. The mandarin fish brain cells treated with c-fos siRNA displayed suppressed pomc mRNA expression, indicating that c-fos positively regulated pomc expression. Furthermore, the mRNA expression of c-fos was higher in the mandarin fish which were more difficult to domesticate. The results of ChIP assay and inhibitor treatment confirmed that the activation of c-fos gene by histone H3K4me3 was catalyzed by Setd1b in mandarin fish. Three open peaks were found at the upstream regulatory region of setd1b by ATAC-seq, and the mRNA expression of setd1b was higher in the mandarin fish which were more difficult to domesticate. These results indicated that Setd1b could methylate histone H3K4 to activate the c-fos transcription, maintaining the high expression of pomc, which might contribute to the special feeding habit of mandarin fish.

CO2-assisted fabrication of silica gel adsorbent in honeycomb rotary wheels for air dehumidification.

A honeycomb rotary wheel fabricated from sheet adsorbent of silica gel is a competitive drying facility for air dehumidification in modern drying and air conditioning industries due to its large contacting area (3,000 m2/m3) and the rapid diffusion of the adsorbate compared to silica gel pellets. The delicate preparation procedure of hygroscopic silica gel is paramount for improved adsorption capacity by optimizing the surface area, pore size, and pore volume of silica gel. In this article, silica gel adsorbent in a honeycomb rotary wheel was fabricated by neutralizing the impregnated water glass solution with a modulus of 3.3 on the glass fiber sheet of the honeycomb matrix using CO2 at different pressure at room temperature instead of corrosive acids. The as-obtained silica gel absorbent was characterized by XRD, scanning electron microscopy (SEM), specific surface area and pore size analysis, and dynamic vapor/gas sorption analysis. The results showed that the as-obtained silica gel adsorbent is uniform in size and tunable in terms of specific surface area, pore size, pore volume, and adsorption capacity by CO2 pressure. The typical silica gel fabricated by CO2 of 0.25 MPa with a specific surface area of 764.86 m2/g, an average micropore size with a diameter of 2.94 nm, and a pore volume of 0.45 ml/g delivers a saturated adsorption capacity of as high as 287.24 mg/g at RH 50%, which is the best in adsorption performance compared to the previously reported results. This provides a new strategy for environment-friendly manufacturing of silica gel adsorbent in honeycomb rotary wheels for air dehumidification.

An Investigation of the Properties of Expanded Polystyrene Concrete with Fibers Based on an Orthogonal Experimental Design.

Expanded polystyrene (EPS) concrete is commonly used as the core material of commercial sandwich panels (CSPs). It is environmentally friendly and lightweight but has poor strength. Adding fibers can improve the microstructure of EPS concrete and reduce the weakening effect of EPS beads on the mechanical properties of concrete. An orthogonal experimental design (OED) was used in this paper to analyze the influence of length and content of polypropylene fiber (PF), glass fiber (GF), and carbon fiber (CF) on the physical and mechanical properties and micromorphology of EPS concrete. Among them, CFs have the most apparent impact on concrete and produce the most significant improvements in all properties. According to the requirements of the flexural performance of CSPs, the splitting tensile strength was taken as the optimization index, and the predicted optimal combination (OC) of EPS concrete with fibers was selected. The variations in the material properties, mechanical properties, and microstructure with age were analyzed. The results show that with increasing age, the dry density, compressive strength, and splitting tensile strength of concrete are markedly improved relative to those of the CSP core material and the control case (CC), and even the degree of hydration is improved.

Metal-free black-red phosphorus as an efficient heterogeneous reductant to boost Fe3+/Fe2+ cycle for peroxymonosulfate activation.

In this work, a novel metal-free black-red phosphorus (BRP) was prepared from red phosphorus (RP) and applied in Fe2+/peroxymonosulfate (PMS) process. Compared with that of RP, the contaminant degradation performance of BRP was significantly elevated due to the enhanced electron transfer from BRP to Fe3+. This enhancement was mainly induced by size decrease effect, the removal of oxidation layer and the partial phase conversion. Moreoevr, BRP avoided the radical quenching reaction caused by reductant itself, whereas it was inevitable using homogeneous reductant like hydroxylamine. More importantly, the system had a superior recyclability and strong resistance to natural water. Though concurrent side-reaction between PMS and BRP occured, multiple PMS dosage could remarkedly alleviated the side-reaction, thus elevating PMS utilization efficiency. The dominant BRP oxidation products included phosphite and phosphate. Interestingly, moderate increase of Fe3+ concentration could efficiently reduce the by-product formation via the prompt PMS activation by regenerated Fe2+. Our work clarified the acceleration mechanism of Fe3+/Fe2+ cycle by BRP and proposed the control strategy of by-prodoct formation.

Histone Methylation of H3K4 Involved in the Anorexia of Carnivorous Mandarin Fish (Siniperca chuatsi) After Feeding on a Carbohydrate-Rich Diet.

Food intake of carnivorous fish decreases after feeding on a carbohydrate-rich diet. However, the molecular mechanism underlying the anorexia caused by high-carbohydrate diets has remained elusive. We domesticated the mandarin fish to feed on carbohydrate-rich (8%) diets. After 61 days of feeding, several fish (Group A) fed well on artificial diets during the whole feeding period; the other fish (Group B) fed well on artificial diets at the beginning of the feeding period, with their food intake then decreasing to half (anorexia) and then to zero for 5 days; and, finally, a negative control (Group C) fed on live prey fish throughout the experimental process. The plasma glucose was significantly higher in the mandarin fish of Group B than in those of Group A, whereas levels of hepatic glycogen and plasma triglyceride were significantly lower. Using transcriptome sequencing, we investigated the differentially expressed genes between Groups A and B and excluded the genes that were not differentially expressed between Groups A and C. The activation of mTOR and Jak/STAT pathways were found in the mandarin fish with anorexia, which was consistent with the higher expression levels of pepck and pomc genes. We found a higher expression of histone methyltransferase setd1b gene and an increased histone H3 tri-methylated at lysine 4 (H3K4me3) in the fish of Group B. Furthermore, using ChIP assay and inhibitor treatment, we found that the up-regulated H3K4me3 could activate pepck expression, which might have contributed to the hyperglycemia and anorexia in the mandarin fish that fed on carbohydrate-rich diets. Our study initially indicated a link between histone methylation and pepck expression, which might be a novel regulatory mechanism of fish who are fed a carbohydrate-rich diet.

Extracellular Matrix-receptor Interaction Signaling Genes Associated with Inferior Breast Cancer Survival.

BACKGROUND/AIM: Breast cancer is a common type of cancer in women, and metastasis frequently leads to therapy failure. Using next-generation sequencing (NGS), we aspired to identify the optimal differentially expressed genes (DEGs) for use as prognostic biomarkers for breast cancer. MATERIALS AND METHODS: NGS was used to determine transcriptome profiles in breast cancer tissues and their corresponding adjacent normal tissues from three patients with breast cancer. RESULTS: Herein, 15 DEGs (fold change >4 and <0.25) involved in extracellular matrix (ECM)-receptor interaction signaling were identified through NGS. Among them, our data indicated that high HMMR expression levels were correlated with a poor pathological stage (p<0.001) and large tumor size (p<0.001), whereas high COL6A6 and Reelin (RELN) expression levels were significantly correlated with an early pathological stage (COL6A6: p=0.003 and RELN: p<0.001). Multivariate analysis revealed that high HMMR and SDC1 expression levels were significantly correlated with poor overall survival (OS; HMMR: adjusted hazard ratio [aHR] 1.93, 95% confidence interval [CI]=1.10-3.41, p=0.023; SDC1: [aHR] 2.47, 95%CI=1.28-4.77, p=0.007) for breast cancer. Combined, the effects of HMMR and SDC1 showed a significant correlation with poor OS for patients with breast cancer (high expression for both HMMR and SDC1: [aHR] 3.29, 95%CI=1.52-7.12, p=0.003). CONCLUSION: These findings suggest that HMMR and SDC1 involved in the ECM-receptor interaction signaling pathway could act as effective independent prognostic biomarkers for breast ductal carcinoma.

Expression of Brain-derived Neurotrophic Factor and Tyrosine Kinase B in Cerebellum of Poststroke Depression Rat Model.

BACKGROUND: The pathophysiology of poststroke depression (PSD) remains elusive because of its proposed multifactorial nature. Accumulating evidence suggests that brain-derived neurotrophic factor (BDNF) plays a key role in the pathophysiology of depression and PSD. And the cerebellar dysfunction may be important in the etiology of depression; it is not clear whether it also has a major effect on the risk of PSD. This study aimed to explore the expression of BDNF and high-affinity receptors tyrosine kinase B (TrkB) in the cerebellum of rats with PSD. METHODS: The rat models with focal cerebral ischemic were made using a thread embolization method. PSD rat models were established with comprehensive separate breeding and unpredicted chronic mild stress (UCMS) on this basis. A normal control group, depression group, and a stroke group were used to compare with the PSD group. Thirteen rats were used in each group. Immunohistochemistry and reverse transcription-polymerase chain reaction (RT-PCR) for detecting the expression of BDNF and TrkB protein and mRNA in the cerebellum were used at the 29 th day following the UCMS. RESULTS: Compared with the normal control group and the stroke group, the number of BDNF immunoreactive (IR) positive neurons was less in the PSD group (P < 0.05). Furthermore, the number of TrkB IR positive cells was significantly less in the PSD group than that in the normal control group (P < 0.05). The gene expression of BDNF and TrkB in the cerebellum of PSD rats also decreased compared to the normal control group (P < 0.05). CONCLUSIONS: These findings suggested a possible association between expression of BDNF and TrkB in the cerebellum and the pathogenesis of PSD.

[Pollution Level and Sources of Organic Phosphorus Esters in Airborne PM2.5 in Chengdu City].

Organic phosphorus esters ( OPEs ) in atmospheric PM2.5 in Chengdu city was quantitatively determined by using gas chromatography-mass spectrometry. The distribution characteristic was discussed, back trajectory model and correlation analysis were used to study the sources of OPEs in PM2.5 in Chengdu city. The results showed that the annual average concentration of Σ7OPEs in atmospheric PM2.5 in Chengdu city was 6.46 ng x m(-3) for the urban site and was 9.38 ng x m(-3) for the suburb site. Due to the waste material recycling industries in the suburb area and the perennial dominant wind direction in Chengdu, the concentration of Σ7OPEs at suburb site was higher than that at urban site (P = 0.013). The atmospheric mixed degree influenced the distribution of OPEs in rural and urban area. The source of Σ7OPEs in atmospheric PM2.5 in Chengdu city was mainly from endogenous pollution which was mainly affected by the local sources around the samoling sites. while the contribution of the exogenous pollution was small.