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2.
Nucleic Acids Res ; 33(19): e172, 2005 Nov 04.
Artículo en Inglés | MEDLINE | ID: mdl-16272462

RESUMEN

Microarrays represent a powerful technology that provides the ability to simultaneously measure the expression of thousands of genes. However, it is a multi-step process with numerous potential sources of variation that can compromise data analysis and interpretation if left uncontrolled, necessitating the development of quality control protocols to ensure assay consistency and high-quality data. In response to emerging standards, such as the minimum information about a microarray experiment standard, tools are required to ascertain the quality and reproducibility of results within and across studies. To this end, an intralaboratory quality control protocol for two color, spotted microarrays was developed using cDNA microarrays from in vivo and in vitro dose-response and time-course studies. The protocol combines: (i) diagnostic plots monitoring the degree of feature saturation, global feature and background intensities, and feature misalignments with (ii) plots monitoring the intensity distributions within arrays with (iii) a support vector machine (SVM) model. The protocol is applicable to any laboratory with sufficient datasets to establish historical high- and low-quality data.


Asunto(s)
Perfilación de la Expresión Génica/normas , Análisis de Secuencia por Matrices de Oligonucleótidos/normas , Inteligencia Artificial , Color , Perfilación de la Expresión Génica/métodos , Cinética , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Control de Calidad , Análisis de Regresión , Reproducibilidad de los Resultados
3.
Nucleic Acids Res ; 29(2): 582-8, 2001 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-11139630

RESUMEN

This report documents the error rate in a commercially distributed subset of the IMAGE Consortium mouse cDNA clone collection. After isolation of plasmid DNA from 1189 bacterial stock cultures, only 62. 2% were uncontaminated and contained cDNA inserts that had significant sequence identity to published data for the ordered clones. An agarose gel electrophoresis pre-screening strategy identified 361 stock cultures that appeared to contain two or more plasmid species. Isolation of individual colonies from these stocks demonstrated that 7.1% of the original 1189 stocks contained both a correct and an incorrect plasmid. 5.9% of the original 1189 stocks contained multiple, distinct, incorrect plasmids, indicating the likelihood of multiple contaminating events. While only 739 of the stocks purchased contained the desired cDNA clone, agarose gel pre-screening, colony isolation and similarity searching of dbEST allowed for the identification of an additional 420 clones that would have otherwise been discarded. Considering the high error rate in this subset of the IMAGE cDNA clone set, the use of sequence verified clones for cDNA microarray construction is warranted. When this is not possible, pre-screening non-sequence verified clones with agarose gel electrophoresis provides an inexpensive and efficient method to eliminate contaminated clones from the probe set.


Asunto(s)
ADN Complementario/análisis , Biblioteca de Genes , Análisis de Secuencia de ADN , Animales , Bacterias/aislamiento & purificación , Clonación Molecular/métodos , Biología Computacional/métodos , Contaminación de Medicamentos , Electroforesis en Gel de Agar/métodos , Variación Genética , Masculino , Ratones , Reproducibilidad de los Resultados , Análisis de Secuencia de ADN/métodos , Homología de Secuencia de Ácido Nucleico , Testículo
4.
Nucleic Acids Res ; 32(15): 4512-23, 2004.
Artículo en Inglés | MEDLINE | ID: mdl-15328365

RESUMEN

Comparative approaches were used to identify human, mouse and rat dioxin response elements (DREs) in genomic sequences unambiguously assigned to a nucleotide RefSeq accession number. A total of 13 bona fide DREs, all including the substitution intolerant core sequence (GCGTG) and adjacent variable sequences, were used to establish a position weight matrix and a matrix similarity (MS) score threshold to rank identified DREs. DREs with MS scores above the threshold were disproportionately distributed in close proximity to the transcription start site in all three species. Gene expression assays in hepatic mouse tissue confirmed the responsiveness of 192 genes possessing a putative DRE. Previously identified functional DREs in well-characterized AhR-regulated genes including Cyp1a1 and Cyp1b1 were corroborated. Putative DREs were identified in 48 out of 2437 human-mouse-rat orthologous genes between -1500 and the transcriptional start site, of which 19 of these genes possessed positionally conserved DREs as determined by multiple sequence alignment. Seven of these nineteen genes exhibited 2,3,7,8-tetrachlorodibenzo-p-dioxin-mediated regulation, although there were significant discrepancies between in vivo and in vitro results. Interestingly, of the mouse-rat orthologous genes with a DRE between -1500 and +1500, only 37% had an equivalent human ortholog. These results suggest that AhR-mediated gene expression may not be well conserved across species, which could have significant implications in human risk assessment.


Asunto(s)
Contaminantes Ambientales/farmacología , Dibenzodioxinas Policloradas/farmacología , Elementos de Respuesta , Animales , Hidrocarburo de Aril Hidroxilasas/genética , Secuencia de Bases , Biología Computacional , Secuencia Conservada , Citocromo P-450 CYP1B1 , Femenino , Perfilación de la Expresión Génica , Genómica , Humanos , Hígado/metabolismo , Ratones , Ratones Endogámicos C57BL , Análisis de Secuencia por Matrices de Oligonucleótidos , Ratas
5.
Cancer Res ; 54(10): 2707-13, 1994 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-8168101

RESUMEN

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) exhibits a broad spectrum of antiestrogenic activities in rodents and mammalian cells in culture. The effects of TCDD on 17 beta-estradiol (E2)-induction of pS2, a prognostic marker for breast cancer, were investigated in MCF-7, ZR-75, HeLa, and Hepa 1c1c7 wild-type and mutant cells. These effects were compared to the suppressive activities of the congener, 2,8-dichlorodibenzo-p-dioxin, and the established antiestrogens, ICI 164,384 and tamoxifen, in order to determine the relative potency of TCDD and to distinguish the mechanism of action of Ah receptor-mediated antiestrogens. Treatment of MCF-7 cells with 10 nM TCDD decreased E2-induced secreted pS2 protein levels by 50% and the induction of the transiently transfected -1100 to -86 pS2 promoter-regulated reporter gene (pS2-LUC) by 57%. Comparable effects on PS2-LUC activity were observed in HeLa and ZR-75 cells. In contrast, TCDD had minimal effects on pS2ERE(-405 to -393)-LUC induction, whereas treatment with 10 nM ICI 164,384 caused a 60% decrease in luciferase activity. In Hepa 1c1c7 wild-type and clone 1 (C1) mutant cells, TCDD also reduced E2 induction of pS2-LUC activity but had little effect in clone 4 (C4) or clone 12 (C12) mutant cells. However, suppression was reestablished following transfection of the human Ah receptor nuclear translocator (ARNT) complementary DNA expression vector into C4 cells and the mouse Ah receptor (AhR) complementary DNA expression vector into C12 cells. Induction of pS2-LUC activity by the ligand-dependent and -independent chimeric estrogen receptors (HE15, HE19, ERcVP16, and ERGR) were also used to examine the role of E2 metabolism and the mechanism of TCDD-mediated antiestrogenic activity. Induction by HE15 and ERcVP16 was suppressed by 57 and 74%, respectively, following treatment with TCDD, whereas ICI 164,384 was significantly less effective (38 and 20%, respectively). These results demonstrate a role for the Ah receptor in TCDD-mediated suppression of E2-induced pS2 expression. Data is presented demonstrating that the effect requires sequences within the pS2 promoter other than the estrogen response element and is independent of E2 oxidative metabolism.


Asunto(s)
Dioxinas/farmacología , Estradiol/análogos & derivados , Luciferina de Luciérnaga/metabolismo , Proteínas de Neoplasias/metabolismo , Dibenzodioxinas Policloradas/farmacología , Proteínas , Tamoxifeno/farmacología , Secuencia de Bases , Neoplasias de la Mama/metabolismo , Estradiol/farmacología , Luciferina de Luciérnaga/genética , Genes Reporteros/efectos de los fármacos , Células HeLa , Humanos , Datos de Secuencia Molecular , Alcamidas Poliinsaturadas , Receptores de Hidrocarburo de Aril , Factor Trefoil-1 , Células Tumorales Cultivadas , Proteínas Supresoras de Tumor
6.
Toxicol Sci ; 86(2): 342-53, 2005 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-15888666

RESUMEN

Hepa-1c1c7 wild-type and benzo[a]pyrene-resistant derived mutant cell lines have been used to elucidate pathways and mechanisms involving the aryl hydrocarbon receptor (AhR). However, there has been little focus on other biological processes which may differ between the isolated lines. In this study, mouse cDNA microarrays representing 4858 genes were used to examine differences in basal gene expression between mouse Hepa-1c1c7 wild-type and c1 (truncated Cyp1a1 protein), c4 (AhR nuclear translocator, ARNT, deficient), and c12 (low AhR levels) mutant cell lines. Surprisingly, c1 mutants exhibited the greatest number of gene expression changes compared to wild-type cells, followed by c4 and c12 lines, respectively. Differences in basal gene expression were consistent with cell line specific variations in morphology, mitochondrial activity, and proliferation rate. MTT and direct cell count assays indicate both c4 and c12 mutants exhibit increased proliferative activity when compared to wild-type cells, while the c1 mutants exhibited decreased activity. This study further characterizes Hepa-1c1c7 wild-type and mutant cells and identifies significant differences in biological processes that should be considered when conducting comparative mechanistic studies with these lines.


Asunto(s)
Línea Celular Tumoral , Fenómenos Fisiológicos Celulares , Mutación , Animales , Benzo(a)pireno , Perfilación de la Expresión Génica , Ratones , Mitocondrias/genética , Análisis de Secuencia por Matrices de Oligonucleótidos
7.
Physiol Genomics ; 15(2): 127-41, 2003 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-12915738

RESUMEN

Estrogen induction of uterine wet weight provides an excellent model to investigate relationships between changes in global gene expression and well-characterized physiological responses. In this study, time course microarray GeneChip data were analyzed using a novel approach to identify temporal changes in uterine gene expression following treatment of immature ovariectomized C57BL/6 mice with 0.1 mg/kg 17alpha-ethynylestradiol. Functional gene annotation information from public databases facilitated the association of changes in gene expression with physiological outcomes, which allowed detailed mechanistic inferences to be drawn regarding cell cycle control and proliferation, transcription and translation, structural tissue remodeling, and immunologic responses. These systematic approaches confirm previously established responses, identify novel estrogen-regulated transcriptional effects, and disclose the coordinated activation of multiple modes of action that support the uterotrophic response elicited by estrogen. In particular, it was possible to elucidate the physiological significance of the dramatic induction of arginase, a classic estrogenic response, by elucidating its mechanistic relevance and delineating the role of arginine and ornithine utilization in the estrogen-stimulated induction of uterine wet weight.


Asunto(s)
Etinilestradiol/farmacología , Expresión Génica , Útero/fisiología , Animales , Arginina/metabolismo , Ciclo Celular/efectos de los fármacos , Análisis por Conglomerados , Activación de Complemento , ADN/biosíntesis , Bases de Datos Genéticas , Femenino , Inflamación/genética , Ratones , Ratones Endogámicos C57BL , Análisis de Secuencia por Matrices de Oligonucleótidos , Tamaño de los Órganos , Ornitina/metabolismo , Ovariectomía , Embarazo , Biosíntesis de Proteínas , ARN/biosíntesis , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Útero/efectos de los fármacos , Útero/inmunología
8.
Mol Cell Endocrinol ; 183(1-2): 127-39, 2001 Oct 25.
Artículo en Inglés | MEDLINE | ID: mdl-11604233

RESUMEN

Several fish proteins exhibit compromised function at temperatures outside of their normal physiological range. In this study, the effect of temperature on the ligand binding and the transactivation abilities of the rainbow trout estrogen receptor (rtER) and human estrogen receptor alpha (hER alpha) were examined. Saturation analysis and gene expression assays, using GST-ER and Gal4-ER fusion proteins consisting of the D, E and F domains of human (hER alpha def) and rainbow trout (rtERdef) receptors, show that GST-rtERdef E2 binding affinity and transactivation ability decrease with increasing temperature. A comparison of the amino acid sequence differences between their ligand binding pockets identified two conservative amino acid residue substitutions in rtER (M317, I496) and hER alpha (L349, M528). The effect of these substitutions on ligand binding and transactivation were examined by constructing reciprocal mutants, which effectively exchanged the binding pockets between rtER and hER alpha. The rtERdef M317L:I496M double mutant exhibited increased E2 binding affinity and transactivation ability at higher temperatures, and displayed hER alpha phenotypic behavior for the phytoestrogen, coumestrol. The hER alpha def L349M:M528I double mutant also exhibited a modest trend towards adopting the rtER phenotype. These studies demonstrate that conservative changes in residue hydrophobicity and volume can significantly affect ER ligand binding and transactivation ability in a temperature-dependent manner. The lack of a complete exchange of phenotypes between rtER and hER alpha indicates that factors outside of the ligand binding pocket are also involved.


Asunto(s)
Regulación de la Expresión Génica , Oncorhynchus mykiss/fisiología , Receptores de Estrógenos/genética , Activación Transcripcional , Zeranol/análogos & derivados , Secuencia de Aminoácidos , Animales , Sitios de Unión , Cumestrol/farmacología , Estrógenos no Esteroides/farmacología , Genes Reporteros , Humanos , Ligandos , Datos de Secuencia Molecular , Mutagénesis , Oncorhynchus mykiss/genética , Fenoles/química , Fenoles/farmacología , Unión Proteica , Receptores de Estrógenos/química , Receptores de Estrógenos/metabolismo , Proteínas Recombinantes de Fusión/metabolismo , Alineación de Secuencia , Temperatura , Células Tumorales Cultivadas , Zeranol/farmacología
9.
Environ Health Perspect ; 105(11): 1238-48, 1997 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-9370515

RESUMEN

Several studies have reported that polychlorinated biphenyls (PCBs) exhibit estrogenic activity; however, it is not clear if these responses are associated with the polychlorinated hydrocarbon or its hydroxylated metabolite. In order to further test this hypothesis, a battery of in vitro and in vivo assays were used to investigate the estrogenic and antiestrogenic activities of 2,4,6,2',6'-pentachlorobiphenyl (PCB 104), its para-hydroxylated derivative 2,4,6,2',6'-pentachloro-4-biphenylol (HO-PCB 104), and its para-chlorinated derivative 2,4,6,2',4',6'-hexachlorobiphenyl (PCB 155). PCB 104 was found to 1) compete with tritiated 17beta-estradiol (E2) for binding to the mouse uterine estrogen receptor (ER); 2) induce gene expression in MCF-7 human breast cancer cells transiently transfected with the Gal4-human ER chimeric construct (Gal4-HEGO) and the Gal4-regulated luciferase reporter gene (17m5-G-Luc); and 3) increase MCF-7 cell proliferation in a dose-dependent manner. HO-PCB 104 exhibited greater estrogenic activity than PCB 104 in the in vitro assays examined. However, gas chromatographic-mass spectrophotometric analysis of extracts prepared from MCF-7 cells incubated with PCB 104 failed to detect the presence of the expected major metabolite HO-PCB 104. The estrogenic activity of the para-chlorinated derivative, PCB 155, was minimal compared to PCB 104 and HO-PCB 104, but it did exhibit significant antiestrogenic activity following co-treatment with 1 nM E2. Co-treatment of PCB 104 with 1 nM E2 had no effect on reporter gene expression compared to E2 alone, while 10 microM HO-PCB 104 exhibited additivity with 1 nM E2. At a dose of 202 mg/kg,PCB 104 increased uterine wet weight in ovariectomized CD-1 mice and induced vaginal epithelial cell cornification at 202, 16, and 1.7 mg/kg in a dose-dependent manner. These studies demonstrate that in addition to the hydroxylated metabolites, selected parent PCB congeners may also exhibit estrogenic and antiestrogenic activities.


Asunto(s)
Expresión Génica/efectos de los fármacos , Bifenilos Policlorados/efectos adversos , Bifenilos Policlorados/farmacología , Receptores de Estrógenos/efectos de los fármacos , Animales , Unión Competitiva , Neoplasias de la Mama/etiología , Neoplasias de la Mama/genética , División Celular/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Estradiol/farmacología , Estradiol/fisiología , Femenino , Humanos , Técnicas In Vitro , Ratones , Bifenilos Policlorados/metabolismo , Receptores de Estrógenos/fisiología , Útero/citología , Útero/efectos de los fármacos , Vagina/citología , Vagina/efectos de los fármacos
10.
J Steroid Biochem Mol Biol ; 75(2-3): 109-19, 2000 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-11226827

RESUMEN

Estrogen receptor-mediated induction of zona radiata (ZR) and vitellogenin (VTG) mRNA and protein in rainbow trout (Oncorhynchus mykiss) was compared to assess their utility as biomarkers for exposure to estrogenic compounds. Partial sequences of rainbow trout ZR and beta-actin were cloned by reverse transcriptase polymerase chain reaction (RT-PCR) using degenerate primers based on conserved regions across a number of species. A 549 bp fragment of the rainbow trout ZR-gene showed a high degree of amino acid sequence identity to that of salmon (77%), winter flounder (64%), carp ZP2 (63%) and medaka (61%) ZR-proteins. The 1020 bp beta-actin fragment was approximately 100% identical to sequences from several species. Real-time PCR was used to quantify the induction of ZR-gene and VTG in rainbow trout liver after in vivo exposure to estradiol-17 beta (E(2)) (0.01, 0.1, 1.0 or 10 mg/kg body weight (bw) fish) or alpha-zearalenol (alpha-ZEA) (0.1, 1.0 or 10 mg/kg bw). Real-time PCR and indirect enzyme-linked immunosorbent assay (ELISA) showed that ZR and VTG were induced in both the liver and the plasma after a single injection of E(2) or alpha-ZEA. ZR was more responsive to low levels of E(2) and alpha-ZEA than VTG, and real-time PCR was shown to be more sensitive than the ELISA. Rainbow trout ZR-gene and proteins provide a sensitive biomarker for assessing estrogenic activity.


Asunto(s)
Proteínas del Huevo/genética , Estradiol/farmacología , Estrógenos no Esteroides/farmacología , Oncorhynchus mykiss/genética , Óvulo/efectos de los fármacos , Vitelogeninas/genética , Zeranol/farmacología , Actinas/química , Actinas/genética , Actinas/metabolismo , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Biomarcadores , Proteínas del Huevo/metabolismo , Ensayo de Inmunoadsorción Enzimática , Estrógenos no Esteroides/administración & dosificación , Femenino , Regulación de la Expresión Génica , Humanos , Hígado/química , Datos de Secuencia Molecular , Oncorhynchus mykiss/fisiología , Óvulo/citología , Óvulo/metabolismo , ARN/metabolismo , Distribución Aleatoria , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Alineación de Secuencia , Vitelogeninas/metabolismo , Zeranol/administración & dosificación , Zeranol/análogos & derivados
11.
J Steroid Biochem Mol Biol ; 75(2-3): 167-76, 2000 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-11226833

RESUMEN

Human sex hormone-binding globulin (SHBG) binds sex steroids with high affinity. In plasma, the number of SHBG steroid-binding sites far exceeds the molar concentrations of sex steroids, and will accommodate other ligands such as phytoestrogens and fatty acids. We have therefore developed a screening assay to identify ligands for SHBG, which exist in our diet or environment. This assay allows the binding of potential ligands to SHBG to be assessed under physiological conditions, and is sensitive to the effects of plasma constituents. Several classes of endocrine active compounds were tested, including hydroxy-polychlorinated biphenyls (HO-PCBs), phthalate esters, monoesters, chlorinated pesticides, as well as synthetic estrogens and phytoestrogens. The relative binding affinities (RBAs) of various compounds to SHBG were determined in competitive displacement assays, by comparison with 17 beta-estradiol (RBA=100). Synthetic estrogens bound SHBG with RBAs of 0.4 (ethinylestradiol)-0.2 (diethylstilbestrol), while some phytoestrogens bound with RBAs of 0.12 (coumestrol)-0.04 (naringenin). Many compounds did not bind to SHBG with sufficient affinity to allow RBA measurements, and these include: several phytoestrogens, such as genistein and kaempferol, polychlorinated biphenyls, phthalate esters and monoesters. Of nine HO-PCB congeners tested only 4-OH-2', 3', 4', 5'-tetraCB and 4-OH-2, 2', 3', 4', 5'-pentaCB bound SHBG in undiluted serum with RBAs of 0.05 and 0.11. Although all test compounds bound to SHBG with much lower affinity than endogenous sex steroids, these interactions may be physiologically relevant in situations where plasma SHBG levels are high and endogenous sex steroid levels are low, such as in pre-pubertal children and women taking oral contraceptives.


Asunto(s)
Isoflavonas , Ligandos , Globulina de Unión a Hormona Sexual/metabolismo , Xenobióticos/metabolismo , Contaminantes Ambientales/metabolismo , Congéneres del Estradiol/metabolismo , Estrógenos no Esteroides/metabolismo , Femenino , Humanos , Cinética , Masculino , Plaguicidas/metabolismo , Ácidos Ftálicos/química , Ácidos Ftálicos/metabolismo , Fitoestrógenos , Preparaciones de Plantas , Plantas/química , Bifenilos Policlorados/metabolismo , Embarazo , Unión Proteica , Xenobióticos/química
12.
J Steroid Biochem Mol Biol ; 82(2-3): 181-94, 2002 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-12477484

RESUMEN

The ability of 14 structurally diverse estrogenic compounds to induce reporter gene expression mediated by estrogen receptors (ERs) from different species was examined. MCF-7 cells were transiently transfected with a Gal4-regulated luciferase reporter gene (17m5-G-Luc) and Gal4-ER chimeric receptors containing the D, E and F domains of the human alpha (Gal4-hERalphadef), mouse alpha (Gal4-mERalphadef), mouse beta (Gal4-mERbetadef), chicken (Gal4-cERalphadef), green anole (Gal4-aERalphadef), Xenopus (Gal4-xERdef) or rainbow trout alpha ERs (Gal4-rtERalphadef). The efficacy of 17beta-estradiol (E2) in inducing reporter gene expression was similar among the different constructs overall, with EC(50) values ranging from 0.05 to 0.7nM. However, Gal4-rtERalphadef had an EC(50) value at 37 degrees C of 28nM, though at 20 degrees C an EC(50) value of 1nM was observed. Despite a similar response to E2 treatment among the ERs, many differences were observed in the magnitude of the response to other structurally diverse chemicals. For example, coumestrol induced Gal4-mERbetadef- and Gal4-aERdef-mediated reporter gene expression 164- and 8-fold greater, respectively, than mediated with the other Gal4-ERs. As well, in contrast to results with other Gal4-ERs, alpha-zearalenol consistently induced Gal4-rtERalphadef-mediated reporter gene activity at lower concentrations than did E2. Overall, the results demonstrate that selected estrogenic compounds exhibit a differential ability to induce reporter gene activity mediated by ERs from different vertebrate species. These data also highlight the importance of incubation temperature when examining rtERalpha-mediated activity.


Asunto(s)
Estradiol/metabolismo , Antagonistas de Estrógenos/metabolismo , Moduladores de los Receptores de Estrógeno/metabolismo , Estrógenos no Esteroides/farmacología , Regulación de la Expresión Génica , Receptores de Estrógenos/metabolismo , Animales , Proteínas de Unión al ADN , Estradiol/química , Genes Reporteros , Humanos , Estructura Molecular , Coactivador 2 del Receptor Nuclear , Receptores de Estrógenos/genética , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Estadística como Asunto , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Activación Transcripcional , Células Tumorales Cultivadas
13.
Toxicol Sci ; 60(1): 6-10, 2001 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-11222867

RESUMEN

RNA and protein expression profiling technologies have revolutionized how toxicologists can study the molecular basis of adverse effects of chemicals and drugs. It is expected that these new technologies will afford efficient and high-throughput means to delineate mechanisms of action and predict toxicity of unknown agents. To reach these goals, a more thorough understanding of the constraints of the methodology is needed to design genome-scale studies and to interpret the vast amount of data collected. This paper addresses some of the limitations and uncertainties of gene expression profiling in mechanistic and predictive toxicology with respect to the expectations of toxicogenomics. The challenges associated with interpreting information from large-scale gene expression experiments in vivo is also discussed.


Asunto(s)
Perfilación de la Expresión Génica , Expresión Génica/efectos de los fármacos , Toxicología/métodos , Xenobióticos/toxicidad , Animales , Predicción/métodos , Genoma Humano , Humanos , Farmacogenética , Toxicología/tendencias
14.
Toxicol Sci ; 59(2): 231-40, 2001 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-11158716

RESUMEN

The estrogenic activities of benzo[a]pyrene (B[a]P) and 10 metabolites (1, 3-, 7-, and 9-hydroxy-B[a]P; 4,5-, 7,8-, and 9,10-dihydrodihydroxy-B[a]P; and 1,6-, 3,6-, and 6,12-B[a]P-dione) were investigated. In vitro, B[a]P did not displace tritiated 17beta-estradiol ([3H]E2) from either a bacterially expressed fusion protein consisting of glutathione-S:-transferase linked to the D, E, and F domains of human ERalpha (GST-hERalphadef), or from full-length human ERbeta (hERbeta) at concentrations as high as 60 microM. However, 10 microM B[a]P demonstrated partial agonist activity in human Gal4-ERalphadef and mouse Gal4-ERbetadef reporter gene assays in transiently transfected MCF-7 cells, relative to 10 nM E2. 1-, 3-, 7-, and 9-hydroxy-B[a]P were found to bind to both receptor isoforms, each showing a higher affinity for the beta isoform. At 10 microM the four monohydroxylated metabolites were able to induce Gal4-hERalphadef- and Gal4-mERbetadef-mediated reporter gene expression to levels 20-100% of that caused by 10 nM E2, suggesting that these metabolites, and not the parent compound, induced reporter gene expression following B[a]P treatment of transiently transfected MCF-7 cells. In addition, the effect of B[a]P on two estrogen-inducible end points, uterine weight and lactoferrin mRNA levels, was determined in ovariectomized DBA/2 and C57BL/6 mice. Neither orally administered B[a]P at doses as high as 10 mg/kg body weight nor subcutaneously injected 3- or 9-hydroxy-B[a]P at doses as high as 20 mg/kg induced effects on uterine wet weight or uterine lactoferrin mRNA levels in either strain. These data suggest that B[a]P metabolites that are estrogenic at high concentrations in vitro do not induce estrogenic effects in the mouse uterus.


Asunto(s)
Benzo(a)pireno/toxicidad , Estrógenos no Esteroides/toxicidad , Expresión Génica/efectos de los fármacos , Receptores de Estrógenos/genética , Útero/efectos de los fármacos , Animales , Benzo(a)pireno/metabolismo , Neoplasias de la Mama , Cartilla de ADN/química , Relación Dosis-Respuesta a Droga , Estradiol/metabolismo , Estradiol/farmacología , Estrógenos no Esteroides/metabolismo , Femenino , Genes Reporteros/efectos de los fármacos , Humanos , Lactoferrina/genética , Lactoferrina/metabolismo , Ratones , Ratones Endogámicos C57BL , Ratones Endogámicos DBA , Tamaño de los Órganos/efectos de los fármacos , ARN Mensajero/metabolismo , Receptores de Estrógenos/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Transfección , Células Tumorales Cultivadas/citología , Células Tumorales Cultivadas/efectos de los fármacos , Útero/metabolismo , Útero/patología
15.
Toxicol Sci ; 69(2): 354-61, 2002 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-12377984

RESUMEN

Recent investigations have demonstrated that polyphenolic catechins inhibit breast cancer cell proliferation and tumor growth. However, the ER-mediated effects of the three predominant catechins (EGCG, ECG, and EGC) have not been extensively examined in vitro or in vivo. Therefore, EGCG, ECG, and EGC were examined for their ability to compete with [(3)H]-17beta-estradiol ([(3)H]-E(2)) for binding to ERalpha and ERbeta and to elicit reporter gene activity in MCF-7 human breast cancer cells transiently transfected with either chimeric ERalpha or ERbeta. EGCG and ECG displaced [(3)H]-E(2) from GST-hERalphadef (D, E, and F domains of human ERalpha fused to GST) or from full-length human ERbeta. Additionally, only EGCG elicited Gal4-hERalphadef and Gal4-mERbetadef-mediated reporter gene expression (EC(50) values: 28 and 19 micro M, respectively) in MCF-7 cells cotransfected with a Gal4-regulated luciferase reporter gene. In cotreatment experiments, EGCG (1-50 micro M) and ECG (1 micro M) decreased E(2)-induced (1 nM) ERbeta-mediated gene expression 35-50%. In vivo, no catechin induced estrogenic responses (uterine weight or uterine peroxidase activity) in immature C57BL/6 mice. However, when mice were cotreated with E(2) (10 micro g/kg/day, 3 days) and either EGCG (30 and 50 mg/kg/day, 3 days) or ECG (50 mg/kg/day, 3 days), uterine peroxidase activity was increased 2.3-fold above that elicited by E(2) alone. In conclusion, EGCG and ECG bind to ERalpha and ERbeta, but only EGCG elicited ER-mediated gene expression in vitro. However, both of these compounds moderately increased E(2)-inducible responses in vivo.


Asunto(s)
Catequina/farmacología , Flavonoides , Fenoles/farmacología , Polímeros/farmacología , Receptores de Estrógenos/efectos de los fármacos , Animales , Unión Competitiva/efectos de los fármacos , Peso Corporal/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Células Cultivadas , Enfermedad Hepática Inducida por Sustancias y Drogas/patología , Citosol/enzimología , Citosol/metabolismo , Receptor alfa de Estrógeno , Receptor beta de Estrógeno , Femenino , Genes Reporteros/efectos de los fármacos , Humanos , Hígado/patología , Ratones , Ratones Endogámicos C57BL , Tamaño de los Órganos/efectos de los fármacos , Peroxidasas/metabolismo , Transfección , Útero/efectos de los fármacos , Útero/enzimología
16.
Toxicol Sci ; 55(2): 320-6, 2000 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-10828263

RESUMEN

A human breast cancer cell line, MCF-7, transiently transfected with a chimeric estrogen receptor (Gal4-HEG0) and a luciferase reporter plasmid (17m5-G-Luc), was used to investigate the estrogenic activity of benzo[a]pyrene (B[a]P), a prototypical polyaromatic hydrocarbon (PAH). B[a]P at concentrations > or = 1 microM produced responses comparable to that of 0.1 nM 17beta-estradiol (E2). The ER antagonist ICI 182,780 (ICI) completely inhibited the response to both E2 and B[a]P, indicating that the responses were ER-mediated. However, 2 microM alpha-napthoflavone (alpha-NF), an Ah receptor antagonist and P450 inhibitor, also decreased the response to B[a]P but not to E2. Analysis of the profile of B[a]P metabolites in the transfected MCF-7 cultures indicated that alpha-NF inhibited the production of the 3- and 9-hydroxy (3-OH and 9-OH), as well as the 7, 8- and 9,10-dihydroxy (7,8-OH and 9,10-OH) B[a]P species. In the ER-alpha reporter assay, the 3-OH and 9-OH metabolites produced maximal responses comparable to E2, with EC50 values of 1.2 microM and 0.7 microM, respectively. The 9,10-OH metabolite exhibited minimal activity in the assay. These responses were inhibited by ICI for both the 3-OH and the 9-OH species; however, alpha-NF inhibited only the response to the 9-OH metabolite. The 7,8-OH metabolite did not exhibit significant estrogenic activity. Furthermore, 7,8-OH B[a]P displayed observable cytotoxicity at concentrations > or = 10(-7) M. This cytotoxic response was completely inhibited by alpha-NF, suggesting that 7,8-OH B[a]P was being further metabolized to one or more cytotoxic metabolites.


Asunto(s)
Benzo(a)pireno/farmacología , Genes Reporteros/efectos de los fármacos , Receptores de Estrógenos/metabolismo , Benzo(a)pireno/metabolismo , Benzoflavonas/farmacología , Neoplasias de la Mama/enzimología , Neoplasias de la Mama/genética , Cromatografía Líquida de Alta Presión , Relación Dosis-Respuesta a Droga , Estradiol/análogos & derivados , Estradiol/farmacología , Antagonistas de Estrógenos/farmacología , Receptor alfa de Estrógeno , Femenino , Fulvestrant , Expresión Génica/efectos de los fármacos , Técnicas Genéticas , Humanos , Hidroxilación , Luciferasas/metabolismo , Receptores de Estrógenos/agonistas , Receptores de Estrógenos/genética , Transfección , Células Tumorales Cultivadas , beta-Galactosidasa/metabolismo
17.
Toxicol Sci ; 46(2): 282-93, 1998 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-10048131

RESUMEN

The estrogenic activities of eight phthalate esters (i.e., di-2-ethylhexyl, di-n-butyl (DBP), butylbenzyl (BBP), di-hexyl (DHP), diiso-heptyl, di-n-octyl, diiso-nonyl, diiso-decyl) were investigated in vitro using estrogen receptor (ER) competitive ligand-binding and mammalian- and yeast-based gene expression assays. In vivo, their effects on uterine wet weight and vaginal cell cornification using ovariectomized Sprague-Dawley rats were assessed. DBP, BBP, and DHP weakly competed with 17 beta-estradiol (E2) for binding to the ER in competitive ligand-binding assays. In gene expression assays using MCF-7 cells transiently transfected with the Gal4-human estrogen receptor construct, Gal4-HEGO, and the Gal4-regulated luciferase reporter gene, 17m5-G-Luc, 10 microM DBP, BBP, or DHP exhibited 36, 42, and 20% activity, respectively, when compared to the 100% response observed with 10 nM E2. Only BBP was found to induce luciferase activity (32%) in HeLa cells stably transfected with Gal4-HEGO and 17m5-G-Luc constructs and to impart minimal ER-mediated viability to the E2-dependent recombinant yeast strain, PL3, on selective medium. No significant responses were observed with the other phthalate esters in any of the in vitro assays. In vivo, none of the eight phthalate esters reproducibly induced significant increases in uterine wet weight in immature ovariectomized Sprague-Dawley rats treated with oral doses of 20, 200, or 2000 mg/kg of phthalate ester. In addition, treatment with phthalate esters at the same doses did not affect the degree of vaginal epithelial cell cornification in mature ovariectomized rats. These results indicate that only selected phthalate esters (i.e., DBP, BBP, and DHP) exhibit weak ER-mediated activity in some in vitro assays at high concentrations but none of the eight phthalate esters elicited in vivo estrogenic responses based upon results obtained from uterotrophic and vaginal cornification assays.


Asunto(s)
Estrógenos/farmacología , Tamaño de los Órganos/efectos de los fármacos , Ácidos Ftálicos/farmacología , Receptores de Estrógenos/fisiología , Útero/efectos de los fármacos , Animales , Unión Competitiva , Células Cultivadas , Estrógenos/genética , Femenino , Hongos/efectos de los fármacos , Hongos/genética , Humanos , Técnicas In Vitro , Ligandos , Estructura Molecular , Ovariectomía , Ratas , Ratas Sprague-Dawley , Proteínas Recombinantes , Transfección , Útero/citología
18.
Toxicol Lett ; 121(3): 167-77, 2001 May 19.
Artículo en Inglés | MEDLINE | ID: mdl-11369471

RESUMEN

The ability of several 4- and 5-ring polycyclic aromatic hydrocarbons (PAHs), heterocyclic PAHs, and their monohydroxy derivatives to interact with the estrogen receptor (ER) alpha and beta isoforms was examined. Only compounds possessing a hydroxyl group were able to compete with 3H-labeled 17beta-estradiol (E2) for binding to either a glutathione-S-transferase and human ERalpha D, E, and F domain fusion protein (GST-hERalphadef) or to the full-length human ERbeta. Competitive binding was comparable for both isoforms, with IC(50) values ranging from 20 to 300 nM (E2 IC(50) approximately 3 nM). However, several compounds were able to induce reporter gene expression preferentially through mERbeta, using MCF-7 cells transiently transfected with either a Gal4-human ERalphadef or Gal4-mouse ERbetadef construct, as well as a Gal4-regulated reporter. These data extend the number and type of PAH-related compounds capable of interacting with ERalpha and ERbeta, and provides additional evidence that even though some compounds may possess a similar affinity for both ER isoforms, the capacity for transcriptional activation can still be isoform-specific.


Asunto(s)
Hidrocarburos Policíclicos Aromáticos/toxicidad , Receptores de Estrógenos/fisiología , Animales , Unión Competitiva , Neoplasias de la Mama/genética , Estradiol/metabolismo , Receptor alfa de Estrógeno , Receptor beta de Estrógeno , Regulación de la Expresión Génica/efectos de los fármacos , Genes Reporteros , Compuestos Heterocíclicos de 4 o más Anillos/metabolismo , Compuestos Heterocíclicos de 4 o más Anillos/toxicidad , Humanos , Ratones , Hidrocarburos Policíclicos Aromáticos/metabolismo , Receptores de Estrógenos/genética , Receptores de Estrógenos/metabolismo , Transfección , Células Tumorales Cultivadas
19.
Reprod Toxicol ; 14(3): 207-16, 2000.
Artículo en Inglés | MEDLINE | ID: mdl-10838121

RESUMEN

We evaluated the feasibility of incorporating an exogenous metabolic activating system into an estrogen receptor-alpha transactivation assay. 17beta-estradiol (E2), and the proestrogenic pesticide methoxychlor (MXC) were evaluated for activity in the presence and absence of Aroclor-1254 induced rat liver S-9 fractions. Both E2 and MXC responded consistently in the assay with average EC(50) values of 9.6 x 10(-11) M and 1.2 x 10(-5) M, respectively. In the presence of a 0.1% S-9 fraction, the EC(50) for E2 was increased to 1.4 x 10(-9) M and that for MXC decreased to 4.9 x 10(-7) M, with both compounds demonstrating increased secondary metabolite formation as evidenced by HPLC analysis. Consistent with these data, metabolites of E2 and MXC exhibited decreased and increased potencies, respectively, in the assay system relative to the parent molecules. S-9 was compatible with the MCF-7 reporter assay and has the potential to enhance detection of proestrogenic materials.


Asunto(s)
Bioensayo/métodos , Microsomas Hepáticos/metabolismo , Receptores de Estrógenos/metabolismo , Activación Transcripcional , Animales , Cromatografía Líquida de Alta Presión , Relación Dosis-Respuesta a Droga , Estradiol/farmacología , Receptor alfa de Estrógeno , Genes Reporteros/efectos de los fármacos , Humanos , Luciferasas/metabolismo , Masculino , Metoxicloro/farmacología , Ratas , Ratas Sprague-Dawley , Receptores de Estrógenos/genética , Transfección , Células Tumorales Cultivadas , beta-Galactosidasa/metabolismo
20.
Reprod Toxicol ; 15(3): 281-92, 2001.
Artículo en Inglés | MEDLINE | ID: mdl-11390173

RESUMEN

The objective of this study was to examine the effects of gestational and lactational exposure to Aroclor 1242 (0, 10, 25, 50, and 100 mg/kg-bw) on male fertility. Doses were administered to C57BL6 female mice orally every two days from two weeks before mating, during mating, and through gestation until postnatal day 21. Male B6D2F1 offspring were examined for anogenital distance, organ development, epididymal sperm count, sperm motility, and in vitro fertility at 16 and 45 weeks of age. Stomach samples of pups nursing from PCB-treated mothers in the 50 mg/kg dose group were analyzed for PCBs and chlorobiphenylols by high resolution gas chromatography coupled with low resolution mass spectrometry. It was estimated that the nursing pups were exposed to 0.2, 0.6, 1.2, and 2.4 mg/kg/day total PCBs in the 10, 25, 50, and 100 mg/kg dose groups, respectively. This exposure level approaches the maximum FDA recommended levels for PCBs in food and breast milk. The composition of the PCBs in the stomach samples was different from the parent mixture, as there was a higher proportion of heavily chlorinated congeners, as well as chlorobiphenylols. Anogenital distance at weaning, and liver, thymus, and testes weight at 16 and 45 weeks of age were not affected by PCB exposure. Epididymal sperm velocity and linearity were significantly increased in the 25 mg/kg dose group at 16 weeks of age. Sperm count was increased by 36% in this dose group (P = 0.06). By 45 weeks of age, average sperm count in this dose group was similar to that of controls. With the exception of the 50 mg/kg dose group at 16 weeks of age, sperm fertilizing ability in vitro was significantly decreased in all PCB-exposed groups at 16 and 45 weeks of age. These results suggest that fertility in the adult mouse is susceptible to developmental exposure to Aroclor 1242 and is independent of testis weight or epididymal sperm count.


Asunto(s)
Anomalías Inducidas por Medicamentos , Arocloros/toxicidad , Antagonistas de Estrógenos/toxicidad , Fertilidad/efectos de los fármacos , Efectos Tardíos de la Exposición Prenatal , Espermatozoides/efectos de los fármacos , Animales , Animales Lactantes , Arocloros/análisis , Peso Corporal/efectos de los fármacos , Antagonistas de Estrógenos/análisis , Femenino , Cromatografía de Gases y Espectrometría de Masas , Contenido Digestivo/química , Técnicas In Vitro , Lactancia , Masculino , Ratones , Ratones Endogámicos C57BL , Ratones Endogámicos DBA , Tamaño de los Órganos/efectos de los fármacos , Embarazo , Maduración Sexual/efectos de los fármacos , Recuento de Espermatozoides , Motilidad Espermática/efectos de los fármacos , Espermatozoides/patología , Testículo/efectos de los fármacos
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