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1.
Inorg Chem ; 62(30): 12018-12026, 2023 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-37463296

RESUMEN

Molecular ferroelectric materials are widely applied in piezoelectric converters, non-volatile memorizers, and photovoltaic devices due to their advantages of adjustable structure, lightweight, easy processing, and environmental friendliness. However, designing multifunctional molecular ferroelectrics with excellent properties has always been a great challenge. Herein, a multiaxial molecular ferroelectric is successfully designed by modifying the quasi-spherical cation dabco with CuBr2 to obtain halogenated [Bretdabco]CuBr4 (Bretdabco = N-bromoethyl-N'-diazabicyclo [2.2.2]octane), which crystallizes in polar point groups (C6). Typical ferroelectric behaviors featured by the P-E hysteresis loop and switched ferroelectric domain are exhibited. Notably, the molecular ferroelectric shows a high TC of 460 K, which is rare in the field and could greatly expand the application range of this material. In addition, the band gap is adjustable through the regulation of halogen. Both the UV absorption spectra and theoretical calculations indicate that the molecular ferroelectrics belong to a direct band gap (2.14 eV) semiconductor. This tunable and narrow band gap semiconductor molecular ferroelectric material with high TC can be utilized more effectively in the study of optoelectronics and sensors, including piezoelectric energy harvesters. This research may provide a promising approach for the development of multiaxial molecular ferroelectrics with a tiny band gap and high TC.

2.
Inorg Chem ; 62(43): 17985-17992, 2023 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-37842935

RESUMEN

Chirality is a fascinating geometrical concept with widespread applications in biology, chemistry, and materials. Incorporating chirality into hybrid perovskite materials can induce novel physical properties (chiral optical activity, nonlinear optics, etc.). Hybrid lead-free or lead-substituted perovskite materials, as representatives of perovskites, have been widely used in fields such as photovoltaics, sensors, catalysis, and detectors. However, the successful introduction of chirality into hybrid lead-free perovskites, which can enable their potential applications in areas such as circularly polarized light photodetectors, memories, and spin transistors, remains a challenging research topic. Here, we synthesized two new chiral lead-free perovskites, [(R)-2-methylpiperazine][BiI5] and [(S)-2-methylpiperazine][BiI5]. The material possesses a perovskite structure with a one-dimensional (1D) arrangement, denoted as ABX5. This structure is composed of chiral cations, specifically methylpiperazine, and endless chains of [BiI3] along the a-axis. These chains are assembled from distorted coplanar [BiI5]2- octahedra. The testing results revealed that (R)-1 and (S)-1 have narrow band gaps (Eg-R = 2.016 eV, Eg-S = 1.964 eV), high photoelectric response, and long carrier lifetime [R = 4.94 µs (τ), S = 7.85 µs (τ)]. It is worth noting that 1D chiral lead-free perovskites (R)-1 and (S)-1, which are synthesized in this study with narrow band gaps, high photoelectric response, and long carrier lifetime, have the potential to serve as alternative materials for the perovskite layer in future iterations of lead-free perovskite solar cells. Moreover, this research will inspire the preparation of multifunctional, lead-free perovskites.

3.
RNA ; 25(11): 1481-1496, 2019 11.
Artículo en Inglés | MEDLINE | ID: mdl-31399541

RESUMEN

The tRNA (m1G37) methyltransferase TrmD catalyzes m1G formation at position 37 in many tRNA isoacceptors and is essential in most bacteria, which positions it as a target for antibiotic development. In spite of its crucial role, little is known about TrmD in Pseudomonas aeruginosa (PaTrmD), an important human pathogen. Here we present detailed structural, substrate, and kinetic properties of PaTrmD. The mass spectrometric analysis confirmed the G36G37-containing tRNAs Leu(GAG), Leu(CAG), Leu(UAG), Pro(GGG), Pro(UGG), Pro(CGG), and His(GUG) as PaTrmD substrates. Analysis of steady-state kinetics with S-adenosyl-l-methionine (SAM) and tRNALeu(GAG) showed that PaTrmD catalyzes the two-substrate reaction by way of a ternary complex, while isothermal titration calorimetry revealed that SAM and tRNALeu(GAG) bind to PaTrmD independently, each with a dissociation constant of 14 ± 3 µM. Inhibition by the SAM analog sinefungin was competitive with respect to SAM (Ki = 0.41 ± 0.07 µM) and uncompetitive for tRNA (Ki = 6.4 ± 0.8 µM). A set of crystal structures of the homodimeric PaTrmD protein bound to SAM and sinefungin provide the molecular basis for enzyme competitive inhibition and identify the location of the bound divalent ion. These results provide insights into PaTrmD as a potential target for the development of antibiotics.


Asunto(s)
Pseudomonas aeruginosa/enzimología , ARNt Metiltransferasas/metabolismo , Catálisis , Cristalografía por Rayos X , Cinética , Unión Proteica , Conformación Proteica , ARN de Transferencia/metabolismo , S-Adenosilmetionina/metabolismo , Especificidad por Sustrato , ARNt Metiltransferasas/química , ARNt Metiltransferasas/aislamiento & purificación
4.
Biochem Biophys Res Commun ; 532(3): 370-376, 2020 11 12.
Artículo en Inglés | MEDLINE | ID: mdl-32878705

RESUMEN

During its intra-erythrocytic growth phase, the malaria parasite Plasmodium falciparum relies heavily on glycolysis for its energy requirements. Pyruvate kinase (PYK) is essential for regulating glycolytic flux and for ATP production, yet the allosteric mechanism of P. falciparum PYK (PfPYK) remains poorly understood. Here we report the first crystal structure of PfPYK in complex with substrate analogues oxalate and the ATP product. Comparisons of PfPYK structures in the active R-state and inactive T-state reveal a 'rock-and-lock' allosteric mechanism regulated by rigid-body rotations of each subunit in the tetramer. Kinetic data and structural analysis indicate glucose 6-phosphate is an activator by increasing the apparent maximal velocity of the enzyme. Intriguingly, the trypanosome drug suramin inhibits PfPYK, which points to glycolysis as a set of potential therapeutic targets against malaria.


Asunto(s)
Plasmodium falciparum/enzimología , Proteínas Protozoarias/química , Proteínas Protozoarias/metabolismo , Piruvato Quinasa/química , Piruvato Quinasa/metabolismo , Regulación Alostérica , Secuencia de Aminoácidos , Animales , Antimaláricos/farmacología , Dominio Catalítico , Cristalografía por Rayos X , Activación Enzimática , Inhibidores Enzimáticos/farmacología , Glucólisis , Humanos , Cinética , Ligandos , Malaria Falciparum/parasitología , Modelos Moleculares , Plasmodium falciparum/genética , Conformación Proteica , Proteínas Protozoarias/genética , Piruvato Quinasa/genética , Suramina/farmacología
5.
Biochem J ; 458(2): 301-11, 2014 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-24328825

RESUMEN

The phosphotransfer mechanism of PYKs (pyruvate kinases) has been studied in detail, but the mechanism of the intrinsic decarboxylase reaction catalysed by PYKs is still unknown. 1H NMR was used in the present study to follow OAA (oxaloacetate) decarboxylation by trypanosomatid and human PYKs confirming that the decarboxylase activity is conserved across distantly related species. Crystal structures of TbPYK (Trypanosoma brucei PYK) complexed with the product of the decarboxylase reaction (pyruvate), and a series of substrate analogues (D-malate, 2-oxoglutarate and oxalate) show that the OAA analogues bind to the kinase active site with similar binding modes, confirming that both decarboxylase and kinase activities share a common site for substrate binding and catalysis. Decarboxylation of OAA as monitored by NMR for TbPYK has a relatively low turnover with values of 0.86 s-1 and 1.47 s-1 in the absence and presence of F26BP (fructose 2,6-bisphosphate) respectively. Human M1PYK (M1 isoform of PYK) has a measured turnover value of 0.50 s-1. The X-ray structures explain why the decarboxylation activity is specific for OAA and is not general for α-oxo acid analogues. Conservation of the decarboxylase reaction across divergent species is a consequence of piggybacking on the conserved kinase mechanism which requires a stabilized enol intermediate.


Asunto(s)
Piruvato Quinasa/química , Piruvato Quinasa/metabolismo , Sitios de Unión/fisiología , Catálisis , Secuencia Conservada , Cristalografía por Rayos X , Descarboxilación/fisiología , Activación Enzimática/fisiología , Humanos , Estabilidad Proteica , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Trypanosoma brucei brucei/enzimología
6.
Nutr Cancer ; 66(3): 517-22, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24033366

RESUMEN

Pre-, peri-, and postoperative oral administration of branched-chain amino acids (BCAA) to patients with primary liver cancer (PLC) during hepatic resection (HR) remains controversial. The aim of this systematic review was to evaluate the efficacy and safety of this practice. Seven literature databases were systematically searched for randomized controlled trials (RCTs) that reported pre-, peri-, and postoperative oral administration of BCAA for PLC patients during HR. Three RCTs were included in a meta-analysis in which risk ratios (RRs) and 95% confidence intervals (95% CIs) were calculated. The 2 groups showed similar recurrence rates (RR = 1.03, 95% CI 0.78 to 1.36) and similar overall survival (RR = 0.91, 95% CI 0.71 to 1.18). Adverse events related to oral administration of BCAA were more than the control group, including nausea, vomiting, diarrhea, abdominal distension, abdominal pain, and hypertension. However, all adverse reactions disappeared after symptomatic treatment. The available evidence suggests that although pre-, peri-, and postoperative oral BCAA for patients with PLC is safe, it is of questionable clinical value. More RCTs are warranted to explore this question definitively.


Asunto(s)
Aminoácidos de Cadena Ramificada/administración & dosificación , Neoplasias Hepáticas/mortalidad , Neoplasias Hepáticas/cirugía , Administración Oral , Aminoácidos de Cadena Ramificada/efectos adversos , Aminoácidos de Cadena Ramificada/uso terapéutico , Bilirrubina/sangre , Humanos , Estado de Ejecución de Karnofsky , Tiempo de Internación , Periodo Posoperatorio , Periodo Preoperatorio , Albúmina Sérica/análisis , Resultado del Tratamiento
7.
Molecules ; 19(7): 8803-19, 2014 Jun 25.
Artículo en Inglés | MEDLINE | ID: mdl-24968335

RESUMEN

A series of N-mustards, which was conjugated to mono- or bis-naphthalimides with a flexible amine link, were synthesized and evaluated for cytotoxicity against five cancer cell lines (HCT-116, PC-3, U87 MG, Hep G2 and SK-OV-3). Several compounds displayed better activities than the control compound amonafide. Further evaluations by fluorescence spectroscopy studies and DNA-interstrand cross-linking assays revealed that the derivatives showed both alkylating and intercalating properties. Among the derivatives, the bis-naphthalimide N-mustard derivative 11b was found to exhibit the highest cytotoxic activity and DNA cross-linking ability. Both 11b and 7b induce HCT-116 cell apoptosis by S phase arrest.


Asunto(s)
Antineoplásicos Alquilantes/síntesis química , Naftalimidas/síntesis química , Mostazas de Fosforamida/síntesis química , Antineoplásicos Alquilantes/farmacología , Apoptosis/efectos de los fármacos , Puntos de Control del Ciclo Celular/efectos de los fármacos , Ensayos de Selección de Medicamentos Antitumorales , Células HCT116 , Células Hep G2 , Humanos , Concentración 50 Inhibidora , Naftalimidas/farmacología , Mostazas de Fosforamida/farmacología , Poli(ADP-Ribosa) Polimerasa-1 , Poli(ADP-Ribosa) Polimerasas/metabolismo
8.
Acta Crystallogr D Biol Crystallogr ; 69(Pt 9): 1768-79, 2013 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23999300

RESUMEN

The active site of pyruvate kinase (PYK) is located between the AC core of the enzyme and a mobile lid corresponding to domain B. Many PYK structures have already been determined, but the first `effector-only' structure and the first with PEP (the true natural substrate) are now reported for the enzyme from Trypanosoma brucei. PEP soaked into crystals of the enzyme with bound allosteric activator fructose 2,6-bisphosphate (F26BP) and Mg(2+) triggers a substantial 23° rotation of the B domain `in crystallo', resulting in a partially closed active site. The interplay of side chains with Mg(2+) and PEP may explain the mechanism of the domain movement. Furthermore, it is apparent that when F26BP is present but PEP is absent Mg(2+) occupies a position that is distinct from the two canonical Mg(2+)-binding sites at the active site. This third site is adjacent to the active site and involves the same amino-acid side chains as in canonical site 1 but in altered orientations. Site 3 acts to sequester Mg(2+) in a `priming' position such that the enzyme is maintained in its R-state conformation. In this way, Mg(2+) cooperates with F26BP to ensure that the enzyme is in a conformation that has a high affinity for the substrate.


Asunto(s)
Magnesio/química , Piruvato Quinasa/metabolismo , Rotación , Trypanosoma brucei brucei/enzimología , Cristalización , Cristalografía por Rayos X , Fructosadifosfatos/química , Fructosadifosfatos/metabolismo , Magnesio/fisiología , Unión Proteica , Estructura Terciaria de Proteína , Piruvato Quinasa/aislamiento & purificación , Especificidad por Sustrato
9.
J Org Chem ; 78(2): 728-32, 2013 Jan 18.
Artículo en Inglés | MEDLINE | ID: mdl-23228030

RESUMEN

A metal-free method for the direct regioselective fluorination of anilides has been developed. In the presence of bis(tert-butylcarbonyloxy)iodobenzene (PhI(OPiv)(2)) and hydrogen fluoride-pyridine, the para-fluorination products of anilides were obtained in moderate to good yields. Because of its operational safety and the use of readily available reagents, this new procedure provides facile access to a variety of para-fluorinated anilides.


Asunto(s)
Anilidas/química , Ácido Fluorhídrico/química , Yodo/química , Yodobencenos/química , Piridinas/química , Halogenación , Estructura Molecular
10.
J Biol Chem ; 286(36): 31232-40, 2011 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-21733839

RESUMEN

Ehrlich's pioneering chemotherapeutic experiments published in 1904 (Ehrlich, P., and Shiga, K. (1904) Berlin Klin. Wochenschrift 20, 329-362) described the efficacy of a series of dye molecules including trypan blue and trypan red to eliminate trypanosome infections in mice. The molecular structures of the dyes provided a starting point for the synthesis of suramin, which was developed and used as a trypanocidal drug in 1916 and is still in clinical use. Despite the biological importance of these dye-like molecules, the mode of action on trypanosomes has remained elusive. Here we present crystal structures of suramin and three related dyes in complex with pyruvate kinases from Leishmania mexicana or from Trypanosoma cruzi. The phenyl sulfonate groups of all four molecules (suramin, Ponceau S, acid blue 80, and benzothiazole-2,5-disulfonic acid) bind in the position of ADP/ATP at the active sites of the pyruvate kinases (PYKs). The binding positions in the two different trypanosomatid PYKs are nearly identical. We show that suramin competitively inhibits PYKs from humans (muscle, tumor, and liver isoenzymes, K(i) = 1.1-17 µM), T. cruzi (K(i) = 108 µM), and L. mexicana (K(i) = 116 µM), all of which have similar active sites. Synergistic effects were observed when examining suramin inhibition in the presence of an allosteric effector molecule, whereby IC(50) values decreased up to 2-fold for both trypanosomatid and human PYKs. These kinetic and structural analyses provide insight into the promiscuous inhibition observed for suramin and into the mode of action of the dye-like molecules used in Ehrlich's original experiments.


Asunto(s)
Adenosina/metabolismo , Piruvato Quinasa/antagonistas & inhibidores , Suramina/farmacología , Azul de Tripano/farmacología , Tripanocidas/farmacología , Animales , Sitios de Unión , Unión Competitiva , Humanos , Concentración 50 Inhibidora , Cinética , Leishmania mexicana/enzimología , Ratones , Unión Proteica , Inhibidores de Proteínas Quinasas/farmacología , Inhibidores de Proteínas Quinasas/uso terapéutico , Azul de Tripano/análogos & derivados , Trypanosoma cruzi/enzimología
11.
Org Biomol Chem ; 10(39): 7869-71, 2012 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-22948963

RESUMEN

We have developed a new KI-catalyzed method for the imidation of an sp(3) C-H bond adjacent to an amide nitrogen atom by using TBHP (tert-butyl hydroperoxide, 70% aqueous solution) as the oxidant. This novel procedure tolerated air and moisture and provided a series of novel products in moderate to excellent yields under mild conditions.


Asunto(s)
Amidas/química , Imidas/síntesis química , Yoduro de Potasio/química , Catálisis , Imidas/química , Estructura Molecular , Estereoisomerismo
12.
Org Biomol Chem ; 10(43): 8566-9, 2012 Nov 21.
Artículo en Inglés | MEDLINE | ID: mdl-23007735

RESUMEN

A convenient, metal-free intramolecular aminofluorination of alkenes has been developed. Employing readily available PhI(OPiv)(2) and hydrogen fluoride-pyridine in the presence of BF(3)·OEt(2), tosyl-protected pent-4-en-1-amines were converted to 3-F-piperidines in one step in good yields as well as high stereoselectivity.


Asunto(s)
Alquenos/química , Ácido Fluorhídrico/química , Piperidinas/síntesis química , Piridinas/química , Compuestos de Vinilo/síntesis química , Ciclización , Yodo/química , Estructura Molecular , Piperidinas/química , Estereoisomerismo , Compuestos de Vinilo/química
13.
Clinics (Sao Paulo) ; 77: 100070, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36087570

RESUMEN

BACKGROUND: Relapse and metastasis of patients with Colorectal Cancer (CRC) is the major obstacle to the long-term life of patients. Its mechanisms remain defined. METHODS: A total of 48 CRC patients were enrolled and 68 samples were obtained from the peripheral blood of patients before or after treatments in this study. Twenty non-cancer patients were also detected as a negative control. Circulating Tumor Cells (CTCs), including Epithelial CTCs (eCTCs), Mesenchymal (MCTCs), and epithelial/mesenchymal mixed phenotypes (mixed CTCs), were identified by CanPatrolTM CTC enrichment and RNA in situ hybridization. The relationship between CTCs number and Progression-Free Survival (PFS) or Overall Survival (OS) was evaluated. RESULTS: Thirty-four of 48 patients (70.8%) were found to have positive CTCs. Total CTCs and MCTCs in the post-treatment had a significant correlation PFS and OS. When total CTCs or MCTCs in 5 mL blood of patients were more than 6 CTCs or 5 MCTCs, PFS of the patients was significantly shorter (p < 0.05) than that in patients with less than 6 CTCs or 5 MCTCs. The patients with > 5 CTCs count changes were found to exhibit poor PFS and OS rates (p < 0.05). CONCLUSION: Total CTCs and MCTCs number detection in patients with colorectal cancer was very useful biomarker for predicting the prognosis of patients. Higher CTCs or MCTCs had poorer PFS and OS rates.


Asunto(s)
Neoplasias Colorrectales , Células Neoplásicas Circulantes , Recuento de Células , Neoplasias Colorrectales/patología , Transición Epitelial-Mesenquimal , Humanos , Recurrencia Local de Neoplasia , Células Neoplásicas Circulantes/patología
14.
J Org Chem ; 76(24): 9997-10004, 2011 Dec 16.
Artículo en Inglés | MEDLINE | ID: mdl-22092171

RESUMEN

Selective syn and anti diacetoxylations of alkenes have been achieved using a PhI(OAc)(2)/BF(3)·OEt(2) system in the presence and absence of water, respectively. A broad range of substrates including electron-deficient alkenes (such as α,ß-unsaturated esters) could be elaborated efficiently at room temperature with this methodology, furnishing the desired products in good to excellent yields and diastereoselectivity. In particular, a multigram-scale diastereoselective diacetoxylation of methyl cinnamate (5.00 g) was also accomplished in a few hours, maintaining the same efficiency as small-scale reaction. This novel methodology provides an alternative approach for the preparation of various 1,2-diols.


Asunto(s)
Alquenos/química , Derivados del Benceno/química , Boranos/química , Catálisis , Técnicas de Química Sintética , Cinamatos/química , Ciclización , Electrones , Ésteres/química , Compuestos de Yodo/química , Espectroscopía de Resonancia Magnética , Estructura Molecular , Estereoisomerismo , Agua
15.
Eur J Med Chem ; 225: 113782, 2021 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-34419891

RESUMEN

Migraine is a common neurovascular disease which has been classified as the sixth most disabling disorder. Current migraine therapy was triptans, however, riptans can cause contraction of blood vessels. Therefore, novel drugs without cardiovascular effects emerged, such as CGRP and selective 5-HT1F receptor agonists. In this work, a series of pyridinylmethylenepiperidine derivatives were designed, synthesized and evaluated for their 5-HT1F receptor agonist activity. The results in vitro showed that compound C1-C6 displayed potent agonist activities compared with positive drug lasmiditan. Pharmacokinetic properties in rat indicated that 2,4,6-trifluoro-N-(6-(fluoro(1-methylpiperidin-4-ylidene)methyl)pyridin-2-yl)benzamide (C5) possessed high AUC and good bioavailability. In two rodent models of migraine, C5 significantly inhibited dural plasma protein extravasation and c-fos expression in the trigeminal nucleus caudalis. Moreover, C5 showed no effect on vasoconstriction. Through these studies, we identified C5 as a potent 5-HT1F receptor agonist for migraine therapy.


Asunto(s)
Diseño de Fármacos , Trastornos Migrañosos/tratamiento farmacológico , Piperidinas/farmacología , Piridinas/farmacología , Receptores de Serotonina/metabolismo , Animales , Peso Corporal/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Ingestión de Alimentos/efectos de los fármacos , Femenino , Células HEK293 , Haplorrinos , Humanos , Inflamación/inducido químicamente , Masculino , Trastornos Migrañosos/metabolismo , Estructura Molecular , Piperidinas/síntesis química , Piperidinas/química , Piridinas/síntesis química , Piridinas/química , Ratas , Ratas Sprague-Dawley , Ratas Wistar , Relación Estructura-Actividad , Receptor de Serotonina 5-HT1F
16.
Org Lett ; 22(8): 2981-2986, 2020 04 17.
Artículo en Inglés | MEDLINE | ID: mdl-32216320

RESUMEN

A phenylselenoglycosylation reaction of glycal derivatives mediated by diphenyl diselenide and phenyliodine(III) bis(trifluoroacetate) under mild conditions is described. Stereoselective glycosylation has been achieved by installing fused carbonate on those glycals. 3,4-O-Carbonate galactals and 2,3-O-carbonate 2-hydroxyglucals are converted into corresponding glycosides in good yields with excellent ß-selectivity, resulting in 2-phenylseleno-2-deoxy-ß-galactosides and 2-phenylseleno-ß-mannosides which are good precursors of 2-deoxy-ß-galactosides and ß-mannosides, respectively.


Asunto(s)
Carbonatos/química , Galactósidos/síntesis química , Manósidos/síntesis química , Conformación de Carbohidratos , Galactósidos/química , Glicosilación , Manósidos/química , Estereoisomerismo
17.
Eur J Pharmacol ; 861: 172599, 2019 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-31404537

RESUMEN

The promoting roles of transcriptional factor six1 have been shown in various tumors, such as breast cancer and colorectal Cancer. However, its roles in hepatocellular carcinoma (HCC) cell stemness and chemotherapeutic sensitivity are never been revealed. In the present study, we showed that six1 expression was negatively correlated the overall survival of HCC patients and significantly increased in HCC tissues. Analysis on normal hepatic cells and HCC cells obtained the consistent result. Functional experiments revealed that six1 knockdown enhanced 5-fluorouracil (5-FU) sensitivity and reduced the stemness of HCC cells. Additionally, six1 knockdown partially reversed 5-FU resistance and attenuated the stemness in 5-FU-resistant HCC cells. Furthermore, we demonstrated that six1 directly bound to sox2 (a stemness master regulator) promoter, enhanced its transcription and expression. Overexpression of sox2 rescued the inhibitory effects of six1 knockdown on the stemness and 5-FU sensitivity of HCC cells. Thus, our work identified a novel six1/sox2 axis in regulating the stemness of HCC cells.


Asunto(s)
Carcinoma Hepatocelular/patología , Fluorouracilo/farmacología , Proteínas de Homeodominio/metabolismo , Neoplasias Hepáticas/patología , Células Madre Neoplásicas/efectos de los fármacos , Carcinoma Hepatocelular/diagnóstico , Resistencia a Antineoplásicos/genética , Femenino , Técnicas de Silenciamiento del Gen , Proteínas de Homeodominio/genética , Humanos , Neoplasias Hepáticas/diagnóstico , Masculino , Persona de Mediana Edad , Pronóstico , Factores de Transcripción SOXB1/genética , Análisis de Supervivencia
18.
Biomol NMR Assign ; 13(1): 49-53, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30298375

RESUMEN

Bacterial tRNA (guanine37-N1)-methyltransferase (TrmD) is an important antibacterial target due to its essential role in translation. TrmD has two domains connected with a flexible linker. The N-terminal domain (NTD) of TrmD contains the S-adenosyl-L-methionine (SAM) cofactor binding site and the C-terminal domain is critical for tRNA binding. Here we report the backbone NMR resonance assignments for NTD of Pseudomonas aeruginosa TrmD. Its secondary structure was determined based on the assigned resonances. Relaxation analysis revealed that NTD existed as dimers in solution. NTD also exhibited thermal stability in solution. Its interactions with SAM and other compounds suggest it can be used for evaluating SAM competitive inhibitors by NMR.


Asunto(s)
Resonancia Magnética Nuclear Biomolecular , Pseudomonas aeruginosa/enzimología , ARNt Metiltransferasas/química , Ligandos , Dominios Proteicos
19.
Biomol NMR Assign ; 13(2): 327-332, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31175551

RESUMEN

Bacterial tRNA (guanine37-N1)-methyltransferase (TrmD) plays important roles in translation, making it an important target for the development of new antibacterial compounds. TrmD comprises two domains with the N-terminal domain binding to the S-adenosyl-L-methionine (SAM) cofactor and the C-terminal domain critical for tRNA binding. Bacterial TrmD is functional as a dimer. Here we report the backbone NMR resonance assignments for the full length TrmD protein of Pseudomonas aeruginosa. Most resonances were assigned and the secondary structure for each amino acid was determined according to the assigned backbone resonances. The availability of the assignment will be valuable for exploring molecular interactions of TrmD with ligands, inhibitors and tRNA.


Asunto(s)
Resonancia Magnética Nuclear Biomolecular , Pseudomonas aeruginosa/enzimología , ARNt Metiltransferasas/química , Modelos Moleculares , Dominios Proteicos , ARNt Metiltransferasas/metabolismo
20.
J Mol Biol ; 431(19): 3690-3705, 2019 09 06.
Artículo en Inglés | MEDLINE | ID: mdl-31381898

RESUMEN

In response to the stress of infection, Mycobacterium tuberculosis (Mtb) reprograms its metabolism to accommodate nutrient and energetic demands in a changing environment. Pyruvate kinase (PYK) is an essential glycolytic enzyme in the phosphoenolpyruvate-pyruvate-oxaloacetate node that is a central switch point for carbon flux distribution. Here we show that the competitive binding of pentose monophosphate inhibitors or the activator glucose 6-phosphate (G6P) to MtbPYK tightly regulates the metabolic flux. Intriguingly, pentose monophosphates were found to share the same binding site with G6P. The determination of a crystal structure of MtbPYK with bound ribose 5-phosphate (R5P), combined with biochemical analyses and molecular dynamic simulations, revealed that the allosteric inhibitor pentose monophosphate increases PYK structural dynamics, weakens the structural network communication, and impairs substrate binding. G6P, on the other hand, primes and activates the tetramer by decreasing protein flexibility and strengthening allosteric coupling. Therefore, we propose that MtbPYK uses these differences in conformational dynamics to up- and down-regulate enzymic activity. Importantly, metabolome profiling in mycobacteria reveals a significant increase in the levels of pentose monophosphate during hypoxia, which provides insights into how PYK uses dynamics of the tetramer as a competitive allosteric mechanism to retard glycolysis and facilitate metabolic reprogramming toward the pentose-phosphate pathway for achieving redox balance and an anticipatory metabolic response in Mtb.


Asunto(s)
Hipoxia/enzimología , Mycobacterium tuberculosis/enzimología , Vía de Pentosa Fosfato , Piruvato Quinasa/metabolismo , Regulación Alostérica/efectos de los fármacos , Carbono/metabolismo , Estabilidad de Enzimas/efectos de los fármacos , Glucosa-6-Fosfato/metabolismo , Cinética , Mycobacterium tuberculosis/efectos de los fármacos , Vía de Pentosa Fosfato/efectos de los fármacos , Pentosafosfatos/química , Pentosafosfatos/farmacología , Conformación Proteica , Dominios Proteicos , Piruvato Quinasa/química , Temperatura
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