The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves.

Coastal areas host a major part of marine biodiversity but are seriously threatened by ever-increasing human pressures. Transforming natural coastlines into urban seascapes through habitat artificialization may result in loss of biodiversity and key ecosystem functions. Yet, the extent to which seaports differ from nearby natural habitats and marine reserves across the whole Tree of Life is still unknown. This study aimed to assess the level of α and ß-diversity between seaports and reserves, and whether these biodiversity patterns are conserved across taxa and evolutionary lineages. For that, we used environmental DNA (eDNA) metabarcoding to survey six seaports on the French Mediterranean coast and four strictly no-take marine reserves nearby. By targeting four different groups-prokaryotes, eukaryotes, metazoans and fish-with appropriate markers, we provide a holistic view of biodiversity on contrasted habitats. In the absence of comprehensive reference databases, we used bioinformatic pipelines to gather similar sequences into molecular operational taxonomic units (MOTUs). In contrast to our expectations, we obtained no difference in MOTU richness (α-diversity) between habitats except for prokaryotes and threatened fishes with higher diversity in reserves than in seaports. However, we observed a marked dissimilarity (ß-diversity) between seaports and reserves for all taxa. Surprisingly, this biodiversity signature of seaports was preserved across the Tree of Life, up to the order. This result reveals that seaports and nearby marine reserves share few taxa and evolutionary lineages along urbanized coasts and suggests major differences in terms of ecosystem functioning between both habitats.

How does the beach ecosystem change without tourists during COVID-19 lockdown?

Urban tourist beach ecosystems provide the essential service of recreation. These ecosystems also support critical ecological functions where biodiversity conservation is not usually a priority. The sudden lockdown due to the COVID-19 pandemic created a unique opportunity to evaluate the effects of human absence in these urban-coastal ecosystems. This study examined bioindicators from 29 urban tourist beaches in seven Latin-American countries and assesses their response to lockdown about some relevant anthropogenic stressors such as pollution, noise, human activities, and user density. The presence of animals and plants, as well as the intensity of stressors, were assessed through a standardized protocol during lockdown conditions. Additionally, the environmental conditions of the beaches before and during lockdown were qualitatively compared using multivariate non-parametric statistics. We found notable positive changes in biological components and a clear decrease in human stressors on almost all the beaches. Dune vegetation increased on most sites. Similarly, high burrow densities of ghost crabs were observed on beaches, except those where cleaning activity persisted. Because of the lockdown, there was an exceptionally low frequency of beach users, which in turn reduced litter, noise and unnatural odors. The observed patterns suggest that tourist beaches can be restored to natural settings relatively quickly. We propose several indicators to measure changes in beaches once lockdown is relaxed. Adequate conservation strategies will render the recreational service of tourist beaches more environmental-friendly.

Species richness, extent and potential threats to mangroves of Sarangani Bay Protected Seascape, Philippines.

Mangroves form one of the most vital tropical ecosystems that support many species and surrounding communities. The Sarangani Bay Protected Seascape (SBPS) in the south of Mindanao Islands in the Philippines is home to a large number of mangrove species, which have not been fully explored. We updated the list of true mangrove species for SBPS from 10 to 24 by integrating the results of our survey and other past mangrove assessments. A practical spatial analysis approach was used to estimate the current mangrove forest extent of SBPS at 514 ha, as compared to 479 ha and 332 ha in 1998 and 2016, respectively, from other independent reports. Mangrove cover was negatively related to built area, cropland, bare ground, rangeland and total human population, but positively related to the number of fishing boats and total tree cover. In addition, we identified other potential anthropogenic threats to mangroves and categorised them into forest clearing or deforestation, over-extraction and pollution. The benefits of mangrove cover expansion, adoption of mangrove-friendly aquaculture and revitalising degraded mangrove forests outweigh their constraints. Our work provided a locally relevant understanding of the potential causes of mangrove loss and the values of human actions in mangrove dynamics, which will contribute to reliable and informed decision-making for the conservation of mangrove species and restoration of mangrove forests in SBPS.

Meta-analysis of the thermal pollution caused by coastal nuclear power plants and its effects on marine biodiversity.

The rise in seawater temperature due to industrial activities is one of the main threats to marine biodiversity. In nuclear power plants, large volumes of water are used for their operation, returning to the ecosystem at higher temperatures. A global meta-analysis was performed to evaluate the thermal effects caused by coastal nuclear power plants on marine organisms. We found 853 articles of which, 99 were included in the qualitative analysis and 75 in the meta-analysis. The meta-analysis showed an increase of 4.38 °C in water temperature near the outfall, and the temperature variation of each study was found to be associated with the power plant latitudes. The main effects on organisms were related to changes in the structure and composition of aquatic communities, with species abundance, distribution, dominance, and density being the most cited ones. Among the affected groups, photosynthesizing microorganisms were the most cited, potentially contributing to shifts in ecosystem dynamics.

Aichi Target 18 beyond 2020: mainstreaming Traditional Biodiversity Knowledge in the conservation and sustainable use of marine and coastal ecosystems.

Indigenous Peoples and Local Communities (IPLCs) have inhabited coastal areas, the seas, and remote islands for millennia, and developed place-based traditional ancestral knowledge and diversified livelihoods associated with the biocultural use of marine and coastal ecosystems. Through their cultural traditions, customary wise practices, and holistic approaches to observe, monitor, understand, and appreciate the Natural World, IPLCs have been preserving, managing, and sustainably using seascapes and coastal landscapes, which has been essential for biodiversity conservation. The international community has more than ever recognized the central role of IPLCs in the conservation of biodiversity-rich ecosystems, in particular, for the achievement of the Global Biodiversity Targets determined by the Parties to the United Nations Convention on Biological Diversity to tackle biodiversity loss. However, much remains to be done to fully recognize and protect at national levels IPLCs' Traditional Biodiversity Knowledge (TBK), ways of life, and their internationally recognized rights to inhabit, own, manage and govern traditional lands, territories, and waters, which are increasingly threatened. At the 2018 4th World Conference on Marine Biodiversity held in Montréal, Canada, eight themed working groups critically discussed progress to date and barriers that have prevented the achievement of the Aichi Biodiversity Targets agreed for the period 2011-2020, and priority actions for the Post-2020 Global Biodiversity Framework. Discussions in the "Application of Biodiversity Knowledge" working group focused on Targets 11 and 18 and the equal valuation of diverse Biodiversity Knowledge Systems (BKS). This Perspective Paper summarizes the 10 Priority Actions identified for a holistic biodiversity conservation, gender equality and human rights-based approach that strengthens the role of IPLCs as biodiversity conservation decision-makers and managers at national and international levels. Furthermore, the Perspective proposes a measurable Target 18 post-2020 and discusses actions to advance the recognition of community-based alternative conservation schemes and TBK to ensure the long-lasting conservation, customary biocultural use, and sustainable multi-functional management of nature around the globe.

Ecosystem services provided by a non-cultured shellfish species: The common cockle Cerastoderma edule.

Coastal habitats provide many important ecosystem services. The substantial role of shellfish in delivering ecosystem services is increasingly recognised, usually with a focus on cultured species, but wild-harvested bivalve species have largely been ignored. This study aimed to collate evidence and data to demonstrate the substantial role played by Europe's main wild-harvested bivalve species, the common cockle Cerastoderma edule, and to assess the ecosystem services that cockles provide. Data and information are synthesised from five countries along the Atlantic European coast with a long history of cockle fisheries. The cockle helps to modify habitat and support biodiversity, and plays a key role in the supporting services on which many of the other services depend. As well as providing food for people, cockles remove nitrogen, phosphorus and carbon from the marine environment, and have a strong cultural influence in these countries along the Atlantic coast. Preliminary economic valuation of some of these services in a European context is provided, and key knowledge gaps identified. It is concluded that the cockle has the potential to become (i) an important focus of conservation and improved sustainable management practices in coastal areas and communities, and (ii) a suitable model species to study the integration of cultural ecosystem services within the broader application of 'ecosystem services'.

Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological pattern.

Seagrass meadows underpin a variety of ecosystem services and are recognized as globally important habitats and a conservation priority. However, seagrass populations are currently impacted by a range of biotic and abiotic stressors, and many are in decline globally. As such, improved understanding of seagrass populations and their associated faunal assemblages is needed to better detect and predict changes in the structure and functioning of these key habitats. Here, we analyzed a large dataset-collected by recreational scuba divers volunteering on a citizen science project-to examine spatiotemporal patterns in ecological structure and to provide a robust and reliable baseline against which to detect future change. Seagrass (Zostera marina) shoot density and the abundance of associated faunal groups were quantified across 2 years at 19 sites nested within three locations in southwest UK, by collecting in situ quadrat samples (2,518 in total) during 328 dives. Seagrass shoot density and meadow fragmentation was comparable across locations but was highly variable among sites. Faunal abundance and assemblage structure varied between areas with or without seagrass shoots; this pattern was largely consistent between locations and years. Overall, increased seagrass density was related to increased faunal abundance and explained shifts in faunal assemblage structure, although individual faunal groups were affected differently. More broadly, our study shows that well-funded and orchestrated citizen science projects can, to some extent, gather fundamental information needed to benchmark ecological structure in poorly studied nearshore marine habitats.

eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity.

Because significant global changes are currently underway in the Arctic, creating a large-scale standardized database for Arctic marine biodiversity is particularly pressing. This study evaluates the potential of aquatic environmental DNA (eDNA) metabarcoding to detect Arctic coastal biodiversity changes and characterizes the local spatio-temporal distribution of eDNA in two locations. We extracted and amplified eDNA using two COI primer pairs from ~80 water samples that were collected across two Canadian Arctic ports, Churchill and Iqaluit, based on optimized sampling and preservation methods for remote regions surveys. Results demonstrate that aquatic eDNA surveys have the potential to document large-scale Arctic biodiversity change by providing a rapid overview of coastal metazoan biodiversity, detecting nonindigenous species, and allowing sampling in both open water and under the ice cover by local northern-based communities. We show that DNA sequences of ~50% of known Canadian Arctic species and potential invaders are currently present in public databases. A similar proportion of operational taxonomic units was identified at the species level with eDNA metabarcoding, for a total of 181 species identified at both sites. Despite the cold and well-mixed coastal environment, species composition was vertically heterogeneous, in part due to river inflow in the estuarine ecosystem, and differed between the water column and tide pools. Thus, COI-based eDNA metabarcoding may quickly improve large-scale Arctic biomonitoring using eDNA, but we caution that aquatic eDNA sampling needs to be standardized over space and time to accurately evaluate community structure changes.

Coastal Macroinvertebrate Study in Penang Island, Malaysia.

Land reclamation in Penang began two decades ago and is still rampant with large reclamation projects planned to be executed in the near future. The present study provides the first information on effects of land reclamation in Penang towards the coastal macroinvertebrates. This study assessed the abundance, diversity, and evenness of coastal invertebrates assumed to be the foremost affected when land is reclaimed. Three kinds of areas were focused on: reclaimed, unclaimed (adjacent to reclaimed), and undisturbed. A total of 53 species of macroinvertebrates from 10 classes (Gastropoda, Bivalvia, Polychaeta, Malacostraca, Maxillopoda, Echinoidea, Polyplacophora, Branchiopoda, Scaphopoda, and Holothuroidea) were sampled. Reclaimed areas were moderately rich in species averaging 11 species compared to 7 species in adjacent and 14 in undisturbed areas. Species richness was the highest in Teluk Aling (an undisturbed area) with 22 species, and was the lowest in Gurney Drive (an adjacent area) with 2 species. The average species diversity and evenness on reclaimed land was the lowest with values of 1.9974 and 0.5787, respectively. The diversity was higher by 5.07% in adjacent areas and by 22.92% in undisturbed areas compared to reclaimed areas. Species evenness was 29.75% higher in unreclaimed areas and 17.87% higher in undisturbed areas compared to reclaimed areas. Land reclamation reduces species diversity and evenness, and to a lesser extent, species richness.

Testing the robustness of Citizen Science projects: Evaluating the results of pilot project COMBER.

BACKGROUND: Citizen Science (CS) as a term implies a great deal of approaches and scopes involving many different fields of science. The number of the relevant projects globally has been increased significantly in the recent years. Large scale ecological questions can be answered only through extended observation networks and CS projects can support this effort. Although the need of such projects is apparent, an important part of scientific community cast doubt on the reliability of CS data sets. NEW INFORMATION: The pilot CS project COMBER has been created in order to provide evidence to answer the aforementioned question in the coastal marine biodiversity monitoring. The results of the current analysis show that a carefully designed CS project with clear hypotheses, wide participation and data sets validation, can be a valuable tool for the large scale and long term changes in marine biodiversity pattern change and therefore for relevant management and conservation issues.

Constrained body shape among highly genetically divergent allopatric lineages of the supralittoral isopod Ligia occidentalis (Oniscidea).

Multiple highly divergent lineages have been identified within Ligia occidentalis sensu lato, a rocky supralittoral isopod distributed along a ~3000 km latitudinal gradient that encompasses several proposed marine biogeographic provinces and ecoregions in the eastern Pacific. Highly divergent lineages have nonoverlapping geographic distributions, with distributional limits that generally correspond with sharp environmental changes. Crossbreeding experiments suggest postmating reproductive barriers exist among some of them, and surveys of mitochondrial and nuclear gene markers do not show evidence of hybridization. Populations are highly isolated, some of which appear to be very small; thus, the effects of drift are expected to reduce the efficiency of selection. Large genetic divergences among lineages, marked environmental differences in their ranges, reproductive isolation, and/or high isolation of populations may have resulted in morphological differences in L. occidentalis, not detected yet by traditional taxonomy. We used landmark-based geometric morphometric analyses to test for differences in body shape among highly divergent lineages of L. occidentalis, and among populations within these lineages. We analyzed a total of 492 individuals from 53 coastal localities from the southern California Bight to Central Mexico, including the Gulf of California. We conducted discriminant function analyses (DFAs) on body shape morphometrics to assess morphological variation among genetically differentiated lineages and their populations. We also tested for associations between phylogeny and morphological variation, and whether genetic divergence is correlated to multivariate morphological divergence. We detected significant differences in body shape among highly divergent lineages, and among populations within these lineages. Nonetheless, neither lineages nor populations can be discriminated on the basis of body shape, because correct classification rates of cross-validated DFAs were low. Genetic distance and phylogeny had weak to no effect on body shape variation. The supralittoral environment appears to exert strong stabilizing selection and/or strong functional constraints on body shape in L. occidentalis, thereby leading to morphological stasis in this isopod.