Striking genetic homogeneity in the widespread South American bracken.

PREMISE: Bracken (Pteridium, Dennstaedtiaceae) is a cosmopolitan genus of aggressive disturbance colonizers that are toxic to agricultural livestock. The taxonomy of Pteridium has been treated in multiple schemes, ranging from one to six species worldwide, with numerous subspecies and varieties. Recent work has focused on the worldwide distribution and systematics of the bracken fern, but South America has been poorly represented. We present the first continent-wide sampling and analysis of Pteridium esculentum, a Southern Hemisphere diploid species. METHODS: Within South America, P. esculentum has several morphotypes, distinguished into subspecies by variation in indument and lamina architecture. We used double digest restriction site-associated DNA sequencing (ddRADSeq) to assess the phylogenetic relationships of P. esculentum subspecies. RESULTS: We found a striking genetic homogeneity in the species, being able to support only two morphotypes from molecular data: P. e. arachnoideum and P. e. campestre. We had high confidence for shallow and deep phylogenetic relationships, but less support for relationships among crown groups. CONCLUSIONS: We describe an east-west geographic pattern that would explain the relationships between populations; and, in contrast to previous studies, we detected differences with P. esculentum from Australia. These results will lay the foundations for studying variations in this species' behavior as a weed, as well as its impact on the production of agricultural livestock in South America.

Plastome phylogenomic analysis reveals evolutionary divergences of Polypodiales suborder Dennstaedtiineae.

BACKGROUND: Polypodiales suborder Dennstaedtiineae contain a single family Dennstaedtiaceae, eleven genera, and about 270 species, and include some groups that were previously placed in Dennstaedtiaceae, Hypolepidaceae, Monachosoraceae, and Pteridaceae. The classification and phylogenetic relationships among these eleven genera have been poorly understood. To explore the deep relationships within suborder Dennstaedtiineae and estimate the early diversification of this morphologically heterogeneous group, we analyzed complete plastomes of 57 samples representing all eleven genera of suborder Dennstaedtiineae using maximum likelihood and Bayesian inference. RESULTS: The phylogenetic relationships of all the lineages in the bracken fern family Dennstaedtiaceae were well resolved with strong support values. All six genera of Hypolepidoideae were recovered as forming a monophyletic group with full support, and Pteridium was fully supported as sister to all the other genera in Hypolepidoideae. Dennstaedtioideae (Dennstaedtia s.l.) fell into four clades with full support: the Microlepia clade, the northern Dennstaedtia clade, the Dennstaedtia globulifera clade, and the Dennstaedtia s.s. clade. Monachosorum was strongly resolved as sister to all the remaining genera of suborder Dennstaedtiineae. Based on the well resolved relationships among genera, the divergence between Monachosorum and other groups of suborder Dennstaedtiineae was estimated to have occurred in the Early Cretaceous, and all extant genera (and clades) in Dennstaedtiineae, were inferred to have diversified since the Late Oligocene. CONCLUSION: This study supports reinstating a previously published family Monachosoraceae as a segregate from Dennstaedtiaceae, based on unique morphological evidence, the shady habitat, and the deep evolutionary divergence from its closest relatives.

Genome-wide data reveal bi-direction and asymmetrical hybridization origin of a fern species Microlepia matthewii.

Introduction: Natural hybridization is common and plays a crucial role in driving biodiversity in nature. Despite its significance, the understanding of hybridization in ferns remains inadequate. Therefore, it is imperative to study fern hybridization to gain a more comprehensive understanding of fern biodiversity. Our study delves into the role of hybridization in shaping fern species, employing Microlepia matthewii as a case study to investigate its origins of hybridization. Methods: We performed double digest Genotyping-by-sequencing (dd-GBS) on M. matthewii and its potential parent species, identifying nuclear and chloroplast SNPs. Initially, nuclear SNPs were employed to construct the three cluster analysis: phylogenetic tree, principal component analysis, and population structure analysis. Subsequently, to confirm whether the observed genetic mixture pattern resulted from hybridization, we utilized two methods: ABBA-BABA statistical values in the D-suite program and gene frequency covariance in the Treemix software to detect gene flow. Finally, we employed chloroplast SNPs to construct a phylogenetic tree, tracing the maternal origin. Results and discussion: The analysis of the nuclear SNP cluster revealed that M. matthewii possesses a genetic composition that is a combination of M. hancei and M. calvescens. Furthermore, the analysis provided strong evidence of significant gene flow signatures from the parental species to the hybrid, as indicated by the two gene flow analyses. The samples of M. matthewii cluster separately with M. hancei or M. calvescens on the chloroplast systematic tree. However, the parentage ratio significantly differs from 1:1, suggesting that M. matthewii is a bidirectional and asymmetrical hybrid offspring of M. hancei and M. calvescens.

The complete chloroplast genome sequence of Hypolepis sparsisora (Dennstaedtiaceae).

The complete chloroplast DNA sequence of Hypolepis sparsisora was the first time to report with 150,839 bp in length. The structure of the chloroplast genome is composed in four regions, which consisted a large single-repeat region (LSC) of 84,285 bp, a small single-repeat region (SSC) of 21,390 bp, and two inverted repeat regions (IRs) of 22,582 bp, respectively. A total of 131genes including 8 rRNA genes, 35 tRNA genes, and 83 protein-coding genes were predicted. We obtained phylogenetic tree by using the complete chloroplast DNA of 15 species ferns. The ML and BI phylogenetic analysis showed the location of H. sparsisora in Dennstaedtiaceae and other families.

Variability of fatty acid profiles in ferns: Relation to fern taxonomy and seasonal development.

Ferns are known to contain long chain polyunsaturated fatty acids which may provide health benefits. The objective of this study was to investigate ferns of Pacific temperate regions (Far East of Russia and New Zealand) as sources of valuable fatty acids: arachidonic (20:4n-6) and eicosapentaenoic (20:5n-3). Fatty acids were analyzed in fronds of 23 fern species from 12 families. Major fatty acids include: 18:3n-3 (6-68% of total fatty acids), 16:0 (6-33%), 18:2n-6 (5-46%), 18:1n-9 (1-60%), 20:4n-6 (1-16%). Polyunsaturated fatty acids of fern fronds belong to the omega-6 (16:2n-6, 18:2n-6, 18:3n-6, 20:2n-6, 20:3n-6, 20:4n-6) and omega-3 (16:3n-3, 18:3n-3, 18:4n-3, 20:3n-3, 20:4n-3, 20:5n-3) families. For the first time, Δ5-unsaturated polymethylene-interrupted fatty acids were reported for ferns: sciadonic (5,11,14-20:3) and juniperonic (5,11,14,17-20:4) acids (up to 1.9% and 0.4%, respectively). Fatty acid profiles in fern fronds were unrelated to fern taxonomy, but affected by spore presence: fronds with sporangia/spores contained more 18:1n-9 and/or 18:2n-6. The absolute content of 20:4n-6 was found to be relatively constant for a species in different seasons. 20:5n-3 was a minor fatty acid (traces-5%) which accumulates during the vegetation period. Young fronds of the New Zealand ferns Phymatosorus pustulatus and Pteridium esculentum were enriched in 20:4n-6, while aged fronds of Cyathea dealbata had the highest level of 20:5n-3. The mature fronds of the Far Eastern ferns Phegopteris connectilis, Dryopteris expansa, and Athyrium sinense were also enriched in 20:5n-3.

Isolation and characterisation of 13 pterosins and pterosides from bracken (Pteridium aquilinum (L.) Kuhn) rhizome.

Systematic phytochemical investigations of the underground rhizome of Pteridium aquilinum (L.) Kuhn (Dennstaedtiaceae) afforded thirty-five pterosins and pterosides. By detailed analysis of one- and two-dimensional nuclear magnetic resonance spectroscopy, circular dichroism (CD) and high-resolution mass spectrometric data, thirteen previously undescribed pterosins and pterosides have been identified. Interestingly, for the first time 12-O-ß-D-glucopyranoside substituted pterosins, rhedynosides C and D, and the sulfate-containing pterosin, rhedynosin H, alongside the two known compounds, histiopterosin A and (2S)-pteroside A2, were isolated from the rhizomes of subsp. aquilinum of bracken. In addition, six-membered cyclic ether pterosins and pterosides, rhedynosin A and rhedynoside A, are the first examples of this type of pterosin-sesquiterpenoid. Additionally, the three previously reported compounds (rhedynosin I, (2S)-2-hydroxymethylpterosin E and (2S)-12-hydroxypterosin A) were obtained for the first time from plants as opposed to mammalian metabolic products. Single crystal X-ray diffraction analysis was applied to the previously undescribed compounds (2R)-rhedynoside B, (2R)-pteroside B and (2S)-pteroside K, yielding the first crystal structures for pterosides, and three known pterosins, (2S)-pterosin A, trans-pterosin C and cis-pterosin C. Rhedynosin C is the only example of the cyclic lactone pterosins with a keto group at position C-14. Six selected pterosins ((2S)-pterosin A, (2R)-pterosin B and trans-pterosin C) and associated glycosides ((2S)-pteroside A, (2R)-pteroside B and pteroside Z) were assessed for their anti-diabetic activity using an intestinal glucose uptake assay; all were found to be inactive at 300 µM.

Development and characterization of microsatellite loci in the pantropical fern Hypolepis punctata (Dennstaedtiaceae).

PREMISE OF THE STUDY: Microsatellite loci were isolated in Hypolepis punctata (Dennstaedtiaceae) to further study the reproductive ecology of this species. METHODS AND RESULTS: We developed 16 microsatellite loci from one sample of H. punctata using an enriched genomic library. These loci were characterized in 28 individuals. The number of alleles per locus ranged from two to 10, and the expected heterozygosity ranged from 0.036 to 0.845. CONCLUSIONS: The results indicate that the microsatellite markers can facilitate further studies on inferring the phylogeography and population genetics of H. punctata and related species.

Antimicrobial and cytotoxic isopimarane diterpenoid glycosides from Microlepia pilosissima Ching.

A phytochemical investigation of the EtOH extract of the dry fronds of Microlepia pilosissima Ching afforded four new isopimarane diterpene glycosides, 3α-O-α-L-rhamnopyranosyl-7ß-O-ß-D-fucopyranosyl-ent-iospimara-8(14),15-diene (1), 3α-O-[2-O-acetyl-α-L-rhamnopyranosyl]-7ß-O-ß-D-fucopyranosyl-ent-iospimara-8(14),15-diene (2), 3α-O-[ß-D-glucopyranosyl-(1→2)-α-L-rhamnopyranosyl]-7ß-O-ß-D-fucopyranosyl-ent-iospimara-8(14),15-diene (3) and 3α-O-[ß-D-fucopyranosyl-(1→2)-α-L-rhamnopyranosyl]-7ß-O-ß-D-fucopyranosyl-ent-iospimara-8(14),15-diene (4) as well as their aglycone, 3α,7ß-dihydroxy-ent-iospimara-8(14),15-diene (5). Their structures were characterized by spectroscopic methods, including 1D-NMR, 2D-NMR, and HR-ESI-MS. The isolated compounds were evaluated in vitro for antimicrobial properties against three pathogen fungi and two oral pathogens and cytotoxicities against eight tumor cell lines. As a result, compounds 1-4 appeared to be promising antimicrobial potential and possessed moderate cytotoxic activities against the tested tumor cell lines.

Perfil de propriedades rurais com pastos invadidos por Pteridium arachnoideum na região norte de Mato Grosso e prevalência de hematúria enzoótica bovina / Profile of farms with pastures invaded by Pteridium arachnoideum in northern Mato Grosso and prevalence of bovine enzootic hematuria

Descreve-se o perfil de 40 propriedades rurais com pastagens invadidas por Pteridium arachnoideum na região norte de Mato Grosso, bem como a prevalência de hematúria enzoótica bovina (HEB) em bovinos de leite e corte nessa região. A HEB foi observada em 15/40 propriedades com prevalências variando entre 0,8 e 16,6%. Aspectos relacionados à implantação das pastagens e manejos utilizados foram discutidos. A maior parte das propriedades que apresentaram HEB possuíam pastagens altamente invadidas pela planta, enquanto que a maioria das propriedades que nunca apresentaram animais acometidos por HEB possuíam pastos com áreas invadidas abaixo de 10%. O desmatamento e a utilização de queimada foram fatores determinantes na invasão de piquetes por P. arachnoidem...

The profile of 40 farms with pastures invaded by Pteridium arachnoideum in northern Mato Grosso as well as the prevalence of bovine enzootic haematuria (BEH) in dairy and beef cattle in the region are described. The BEH was observed in 15/40 properties with prevalence rates ranging from 0.8 to 16.6%. Aspects related to the deployment of pastures and management are discussed. In most farms where BEH occurs, the pastures were highly invaded by the plant, whereas in most farms where HEB does not occur the pastures had less than 10% of Pteridium arachnoideum. Deforestation and the use of fire were determinant factors in the invasion of the paddocks by P. arachnoideum...