Topsoil's magnetic and electrical properties in a volcanic and tropical region.

Environmental monitoring by measuring topsoil's magnetic and electrical properties is one practical, quick, and low-cost approach. This method has been used worldwide as a proxy for the presence of potentially toxic elements. However, additional research must be conducted on diverse soil types, geology, and climates. We determined the magnetic and electrical properties of urban and agricultural topsoils in a volcanic region and analyzed them as possible proxies of potentially toxic elements for environmental monitoring. To identify topsoil characteristics, we employed the measurements of magnetic susceptibility and hysteresis, electrical conductivity, total dissolved solids, power of hydrogen (pH), particle morphology, and element contents that were statistically analyzed to identify relevant properties. The result was able to differentiate volcanic soils from urban, industrial, and agricultural areas as well. The value of low-frequency magnetic susceptibility (χLF) in soils from urban areas is higher than 866.0±249.9 ×10-8 m3 kg-1, while the value of χLF in agricultural areas is 208.0±67.8 ×10-8 m3 kg-1. This is reinforced by the relationship between low-frequency and frequency-dependent magnetic susceptibility (χLF-χFD%) in samples from urban areas that fall within the same cluster dominated by coarse-grained magnetic minerals originating from anthropogenic processes. In contrast, the agricultural area forms a separate cluster primarily influenced by pedogenic processes from acid igneous rock minerals. Caution is required for interpreting the magnetic signal due to the high contents of lithogenic magnetic particles inherited from the parent materials of Andisols.

Ecological co-occurrence and soil physicochemical factors drive the archaeal community in Amazonian soils.

We evaluated the co-occurrence of archaeal taxonomic groups and soil physicochemical characteristics in relation to the structuring of the archaeal community in Amazonian soil under different land use systems. Soil samples were collected in primary forest (PF), secondary forest (SF), agricultural systems (AG) and cattle pastures (PA). Archaeal community composition was revealed based on high-throughput amplicon sequencing of the 16S rRNA gene. The results revealed co-occurrence of archaeal classes, with two groups formed: Thaumarchaeota classes, including South Africa Gold Mine-Group 1 (SAGMG-1), Crenarchaeotic group (SCG) and Crenarchaeota candidate division YNPFFA, with predominance in PF and SF; and Bathyarchaeota_unclassified, Methanomicrobia and Methanobacteria (Euryarchaeota) with the FHMa11 terrestrial group, with predominance in PA. The number of co-occurrences between groups was lower in SF, AG and PA (approximately 30%) than in PF. The qPCR analysis revealed that PF also had the largest number of archaeal representatives. Soil texture may be a limiting factor of interactions between groups since the most representative groups, SAGMG-1 and the SCG (over 20% in all sites), were positively associated with coarse sand, the soil factor most correlated with the groups (33% of the total). These results suggest that interactions between archaeal classes belonging to different phyla may be dependent on the number of individuals in the soil environment. In this context, differences in soil physical structure among the land use systems can reduce the representatives of key groups and consequently the co-occurrence of Archaea, which could compromise the natural dynamics of this complex environment.

Aerobic Methanotrophy and Co-occurrence Networks of a Tropical Rainforest and Oil Palm Plantations in Malaysia.

Oil palm (OP) plantations are gradually replacing tropical rainforest in Malaysia, one of the largest palm oil producers globally. Conversion of lands to OP plantations has been associated with compositional shifts of the microbial community, with consequences on the greenhouse gas (GHG) emissions. While the impact of the change in land use has recently been investigated for microorganisms involved in N2O emission, the response of the aerobic methanotrophs to OP agriculture remains to be determined. Here, we monitored the bacterial community composition, focusing on the aerobic methanotrophs, in OP agricultural soils since 2012, 2006, and 1993, as well as in a tropical rainforest, in 2019 and 2020. High-affinity methane uptake was confirmed, showing significantly lower rates in the OP plantations than in the tropical rainforest, but values increased with continuous OP agriculture. The bacterial, including the methanotrophic community composition, was modified with ongoing OP agriculture. The methanotrophic community composition was predominantly composed of unclassified methanotrophs, with the canonical (Methylocystis) and putative methanotrophs thought to catalyze high-affinity methane oxidation present at higher relative abundance in the oldest OP plantation. Results suggest that the methanotrophic community was relatively more stable within each site, exhibiting less temporal variations than the total bacterial community. Uncharacteristically, a 16S rRNA gene-based co-occurrence network analysis revealed a more complex and connected community in the OP agricultural soil, which may influence the resilience of the bacterial community to disturbances. Overall, we provide a first insight into the ecology and role of the aerobic methanotrophs as a methane sink in OP agricultural soils.

Sorption-desorption and biodegradation of sulfometuron-methyl and its effects on the bacterial communities in Amazonian soils amended with aged biochar.

Sulfometuron-methyl is a broad-spectrum herbicide, used throughout Brazil; however, its environmental impacts in biochar (BC) amended soils is not fully understood. Biochar is known to enhance soil quality but can also have undesired effects such as altering the bioavailability and behavior of herbicides. Microbial communities can degrade herbicides such as sulfometuron-methyl in soils; however, they are known to be affected by BC. Therefore, it is important to understand the tripartite interaction between these factors. This research aimed to evaluate the sorption-desorption and biodegradation of sulfometuron-methyl in Amazonian soils amended with BC, and to assess the effects of the interactions between BC and sulfometuron-methyl on soil bacterial communities. Soil samples were collected from field plots amended with BC at three doses (0, 40 and 80 t ha-1) applied ten years ago. The herbicide sorption and desorption were evaluated using a batch equilibrium method. Mineralization and biodegradation studies were conducted in microcosms incubated with 14C-sulfometuron-methyl for 80 days. Systematic soil sampling, followed by DNA extraction, quantification (qPCR) and 16S rRNA amplicon sequencing were performed. The presence of BC increased the sorption of the herbicide to the soil by 11% (BC40) and 16% (BC80) compared to unamended soil. The presence of BC also affected the degradation of 14C-sulfometuron-methyl, reducing the mineralization rate and increasing the degradation half-life times (DT50) from 36.67 days in unamended soil to 52.11 and 55.45 days in BC40 and BC80 soils, respectively. The herbicide application altered the bacterial communities, affecting abundance and richness, and changing the taxonomic diversity (i.e., some taxa were promoted and other inhibited). A tripartite interaction was found between BC, the herbicide and soil bacterial communities, suggesting that it is important to consider the environmental impact of soil applied herbicides in biochar amended soils.

Precipitation-drainage cycles lead to hot moments in soil carbon dioxide dynamics in a Neotropical wet forest.

Soil CO2 concentrations and emissions from tropical forests are modulated seasonally by precipitation. However, subseasonal responses to meteorological events (e.g., storms, drought) are less well known. Here, we present the effects of meteorological variability on short-term (hours to months) dynamics of soil CO2 concentrations and emissions in a Neotropical wet forest. We continuously monitored soil temperature, moisture, and CO2 for a three-year period (2015-2017), encompassing normal conditions, floods, a dry El Niño period, and a hurricane. We used a coupled model (Hydrus-1D) for soil water propagation, heat transfer, and diffusive gas transport to explain observed soil moisture, soil temperature, and soil CO2 concentration responses to meteorology, and we estimated soil CO2 efflux with a gradient-flux model. Then, we predicted changes in soil CO2 concentrations and emissions under different warming climate change scenarios. Observed short-term (hourly to daily) soil CO2 concentration responded more to precipitation than to other meteorological variables (including lower pressure during the hurricane). Observed soil CO2 failed to exhibit diel patterns (associated with diel temperature fluctuations in drier climates), except during the drier El Niño period. Climate change scenarios showed enhanced soil CO2 due to warmer conditions, while precipitation played a critical role in moderating the balance between concentrations and emissions. The scenario with increased precipitation (based on a regional model projection) led to increases of +11% in soil CO2 concentrations and +4% in soil CO2 emissions. The scenario with decreased precipitation (based on global circulation model projections) resulted in increases of +4% in soil CO2 concentrations and +18% in soil CO2 emissions, and presented more prominent hot moments in soil CO2 outgassing. These findings suggest that soil CO2 will increase under warmer climate in tropical wet forests, and precipitation patterns will define the intensity of CO2 outgassing hot moments.

Environmental and health risk assessment of agricultural areas adjacent to uranium ore fields in Brazil.

To investigate the risks posed by trace and rare earth elements (REEs) in two tropical uranium ore fields, metal concentrations from 50 vegetable samples (corn and soybean) and their corresponding agricultural soils were evaluated in a U mining area and a U-rich coal mining area in Brazil. Samples from both areas had metal concentrations (REE: La to Lu, and trace elements: As, Pb, Cd, Ni, Cu, Cr, Mn, Zn, Ba, U, Sr) that were higher than the guidelines proposed by the Brazilian environmental agency. Soils from the U mining area (Poços de Caldas) generally had higher contents of trace elements than the coal mining area (Figueira), with the exception of Ni and Cr, indicating a higher risk of pollution, which was confirmed by a pollution load index that was greater than unity. For both sites, concentrations of uranium in the soil and plants, its hazard quotients and the soil contamination factor were higher in agricultural fields closer to the mines, indicating that contamination and the consequent risks to human health were distance dependent. REE concentrations averaged 52.8 mg kg-1 in the topsoils and 0.76 mg kg-1 in the grains for Figueira, whereas higher values of 371 mg kg-1 (topsoils) and 0.9 mg kg-1 (grains) were found in Poços de Caldas. Based upon corn and soybean consumption, the estimated intake dose of the REE was lower than the intake dose predicted to be problematic for human health for both sites, indicating limited risk related to the ingestion of REE.

Ecotoxicological assessment after the world's largest tailing dam collapse (Fundão dam, Mariana, Brazil): effects on oribatid mites.

Worldwide, environmental tragedies involving mining dam ruptures have become more frequent. As occurred a few years ago in Brazil (on 5 November 2015, in Minas Gerais state) the Fundão Dam rupture released 60 million m3 of tailings into terrestrial and aquatic ecosystems. Since then, little information on the ecotoxicity of these tailings has been disclosed. In the laboratory, the acute, chronic and bioaccumulation effects of increased Fundão tailing concentrations on oribatid mites (Scheloribates praeincisus) were assessed. Additionally, the bioaccumulation of 11 trace metals (Al, As, Cd, Cr, Cu, Fe, Hg, Mn, Ni, Pb and Zn) and the total density of oribatid mites found in the areas contaminated by the Fundão tailings were determined. The percentages of mite survival and reproductive inhibition were higher than 60% and 80%, respectively, in all contaminated areas with the highest concentration (100% mine tailings). Field studies showed an expressive reduction in the total density of oribatids per m-2 (up to 54 times) in the contaminated areas compared with the reference area. Metal accumulations in the field were 5.4 and 3.2 higher (for Ni and Hg, respectively) and up to two times higher (for most metals) than those in the laboratory for 42 days. The mite responses to the Fundão tailings found in this study suggest long-term interference in their biological development. In this sense, we can conclude that the introduction of mine tailings onto soils tended to compromise the functionality of the mites in the ecosystem, which causes imbalances to cascade other organisms of the trophic web.

Adsorption of phenylurea herbicides by tropical soils.

The distribution of pesticides in soils with consequences for their mobility, bioavailability and water contamination is mainly ruled by sorption processes. Such processes are seldom investigated in tropical soils. Thus, specific interactions between tropical soils and most pesticides are widely unknown. Furthermore, the question arises whether the same factors govern adsorption in tropical and temperate soils. Thus, the sorption behaviour of five phenylurea herbicides (PUHs) was studied in eighteen differently composed soils originating from southwestern Nigeria. Sorption data were obtained by equilibrating the soil samples with 0.01 M CaCl2 solutions spiked with increasing concentrations of the target PUHs. The equilibrium data fitted well to the Freundlich isotherm equation (R2 ≥ 0.96), delivering the corresponding parameters (Kf and n). Linear distribution coefficients (Kd) were also calculated. The Pearson correlation was used to identify the specific soil and herbicide properties that have statistically significant correlations with sorption parameters. High correlations were established for various soil properties (pH, cation exchange capacity, organic carbon content, content of amorphous Fe and Mn oxides, clay/silt mass proportions) as well as molecular descriptors (octanol-water partition coefficient (log Kow) and molecular mass (Mw)) of the moderately hydrophobic herbicides. Monuron, chlorotoluron and isoproturon showed higher affinities for soil than previously reported. The gathered knowledge might assist in the assessment and in the precautionary avoidance of potential risks generated by these compounds in tropical soils.

C and P pool restoration by a no-tillage system on Brazilian Cerrado Oxisol in Piauí State.

The Cerrado soil is under constant modification, especially because of the use of agricultural systems, which affect soil carbon (C) and phosphorus (P) functioning. Thus, the objective of this study was to determine the C and P dynamics in Brazilian Cerrado Oxisol in Piauí State under natural and anthropic conditions, considering that conservational agricultural management and no-tillage systems can restore the C and P pools in that soil. Four soil samples with distinct characteristics (native Cerrado, NC; burned native Cerrado, BNC; conventional tillage agricultural system, CTS; and no-tillage agricultural system, NTS) were collected in the study area for chemical and physical laboratory analysis. The total organic carbon (TOC) concentrations found were 33 g kg-1, 27 g kg-1, 26 g kg-1, and 20 g kg-1 for CTS, NTS, NC, and BNC, respectively. The NTS had a total nitrogen (TN) concentration of 2.0 g kg-1. The CTS had 33.4 g kg-1 of soil-oxidizable C, followed by the NTS with 27.2 g kg-1. In both studied layers, the NTS had an organic P concentration > 200 mg kg-1. The higher TOC concentration in the CTS was because of the higher content of clay in comparison with that in the NTS. The organic P in the NTS was associated with a less labile fraction of C. Thus, despite the disturbance caused by agricultural systems, the adoption of the NTS could be an influential strategy in agricultural systems to restore soil organic functioning in the Brazilian Cerrado Oxisol in Piauí State.

Remediation effectiveness of vermicompost for a potentially toxic metal-contaminated tropical acidic soil in China.

Potentially toxic metal (PTM) contamination coupled with soil acidification has posed a severe threat to agricultural sustainability of tropical region in the world. In this study, a vermicopomst (VC) produced from vermicomposting cattle manure under tropical environment was applied to remediating a tropical acidic soil in Hainan, China. The effectiveness of VC in reducing available PTMs in soils was evaluated by incubation experiments with a Cd, Cr or Ni spiked soil and a Cd contaminated field soil. The dynamic changes of soil physical, chemical and biological properties after VC amendment were determined to understand the mechanisms of PTM immobilization. The results showed that VC amendment significantly reduced 0.01M CaCl2 extractable amounts of Cd, Ni and Cr in the spiked soils, and CaCl2 extractable Cd was reduced by 49.3% when VC was amended to the Cd contaminated field soil. Thermodynamic studies showed that VC had a high adsorption capacity for Cd, Ni and Cr, with the maximum adsorption (obtained from the Langmuir model) of 33.45, 26.17, and 20.88 mg/g, respectively. The reduction in CaCl2 extractable metals after VC amendment was consistent with the order of maximum adsorption of VC for Cd, Ni, and Cr. Vermicompost amendment increased soil pH by 0.7 to 1.5 units, which is positively related with VC rate, but negatively with the decrease in extractable metals. These results indicates that adsorption of metals onto VC and an increase in soil pH after VC amendment are likely responsible for the decreased availability of Cd, Ni, and Cr in the contaminated soil. In addition, the addition of stable organic substances and subsequent formation of water-stable aggregates may be also beneficial for immobilizing PTMs and improving tropical soil quality.

Dynamic biochar effects on nitrogen use efficiency, crop yield and soil nitrous oxide emissions during a tropical wheat-growing season.

The application of biochar to soil combined with synthetic fertilizers has been proposed for enhancing N availability to plants and crop yields while reducing nitrous oxide (N2O) emissions. However, little is known about those interactions for tropical soils. Thus, this study evaluated the effects of sugarcane straw biochar on tropical soil attributes, crop productivity, N2O emissions and N use efficiency. It was conducted a greenhouse pot experiment with wheat cultivation using a15N-labelled source (NH415NO3). The treatments evaluated were: Soil, with N, no biochar; Soil, with N and biochar at rates equivalent to 0.4%, 0.8% and 1.9% (w/w); and a control (soil only). Increasing biochar amendments decreased cumulative N2O emissions by 71% compared to the fertilized, no-biochar soil. Moreover, increasing biochar rates to soil increased available P up to 30% and led to 8-fold higher exchangeable K+ concentrations. Grain yield and shoot biomass increased by 27 and 16%, respectively, with the rate of 1.9% biochar to soil, which also resulted in higher tillering and number of heads compared to fertilized, no-biochar soil. The amount of 15N in grains was 28% higher with 0.8 and 1.9% of biochar compared to no-biochar soil, which correspond to 25% of the total 15N-labelled fertilizer applied to soil. The 15N loss by volatilization did not differ between treatments. Nevertheless, the biochar amended soils produced less N2O than the no-biochar treatment, indicating that biochar amendment to tropical soil led to gaseous N losses in forms other than N2O. The application of biochar to soil improved N utilization and the efficiency with which N is acquired by the plants and converted to grain yield, thereby enhancing crop performance, while simultaneously reducing N2O emissions from N fertilization, thus mitigating GHG emissions to the atmosphere under tropical conditions.

Impact of nitrogen additions on soil microbial respiration and temperature sensitivity in native and agricultural ecosystems in the Brazilian Cerrado.

Soil microbial respiration (SMR1) is a major flux of CO2 from terrestrial ecosystems into the atmosphere, which depends on several abiotic factors, including soil temperature and nutrient availability. A nutrient of great interest in soil ecology is nitrogen (N) because of its use in agriculture and an expected increase of depositions in soils. Models on the relationship between SMR and temperature may be able to describe the effects of N addition on the temperature sensitivity of soil respiration (Q102). Hence, this study aimed to investigate the effects of N addition on SMR and Q10 values in soils of native Brazilian Cerrado (NC3), and of an agricultural ecosystem (AE4) cultivated over the past 17 years. SMR was stimulated by N additions (100 and 200 mg N kg dwt soil-1) in samples of Cerrado sites depending on the land use type and temperature assessed. The addition of 200 N kg dwt soil-1 to NC showed higher SMR values at 25 °C compared to soil without N input, whereas the same happened in AE at 30 °C. Overall, NC presented higher Q10 values than AE. N inputs increased Q10 in the Cerrado sites. In NC, the highest Q10 value occurred when 200 mg N kg dwt soil-1 was added to soil, whereas in AE the greatest value was observed for a lower dose (100 mg N kg dwt soil-1). This study shows that N additions to tropical soils alter Q10 values depending on dose and land use. These are important findings to compare the fragility of pristine and cultivated Brazilian Cerrado ecosystems in the perspective of climate change.

Sorption and degradation of neonicotinoid insecticides in tropical soils.

Neonicotinoids are the most widely applied class of insecticides in cocoa farming in Ghana. Despite the intensive application of these insecticides, knowledge of their fate in the Ghanaian and sub-Saharan African environment remains low. This study examined the behavior of neonicotinoids in soils from cocoa plantations in Ghana by estimating their sorption and degradation using established kinetic models and isotherms. Studies of sorption were conducted using the batch equilibrium method on imidacloprid, thiamethoxam, clothianidin, acetamiprid and thiacloprid, while degradation of imidacloprid, thiamethoxam and their respective deuterated counterparts was studied using models proposed by the European forum for coordination of pesticide fate and their use (FOCUS). Analytes were extracted using the quick, easy, cheap, effective, rugged and safe (QuEChERS) procedure and quantified by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Average recoveries were high (≥ 85%) for all analytes. The findings from the study suggest that neonicotinoid insecticides may be persistent in the soils studied based on estimated half-lives > 150 days. The study also revealed generally low-sorption coefficients for neonicotinoids in soils, largely influenced by soil organic carbon.

Soils impacted by PAHs: Would the stabilized organic matter be a green tool for the immobilization of these noxious compounds?

The objective of this study was to investigate the role of stabilized organic matter (vermicompost) and tropical soils in the sorption of naphthalene, anthracene and benzo[a]pyrene. The results obtained for the three compounds were extrapolated for the priority polycyclic aromatic hydrocarbons (PAHs) pollutants according to Environmental Protection Agency (US EPA). To evaluate the sorption process, high performance liquid chromatography was employed and the data was fitted by Freundlich isotherms. The results suggest that the sorption effect generally increases with the number of benzene rings of the PAHs, and that the persistence of PAHs in the environment is possibly related to the number of benzene rings in the PAH molecule. In addition, the pH of the vermicompost can strongly affect the adsorption process in this matrix.

Seedling growth responses to phosphorus reflect adult distribution patterns of tropical trees.

Soils influence tropical forest composition at regional scales. In Panama, data on tree communities and underlying soils indicate that species frequently show distributional associations to soil phosphorus. To understand how these associations arise, we combined a pot experiment to measure seedling responses of 15 pioneer species to phosphorus addition with an analysis of the phylogenetic structure of phosphorus associations of the entire tree community. Growth responses of pioneers to phosphorus addition revealed a clear tradeoff: species from high-phosphorus sites grew fastest in the phosphorus-addition treatment, while species from low-phosphorus sites grew fastest in the low-phosphorus treatment. Traits associated with growth performance remain unclear: biomass allocation, phosphatase activity and phosphorus-use efficiency did not correlate with phosphorus associations; however, phosphatase activity was most strongly down-regulated in response to phosphorus addition in species from high-phosphorus sites. Phylogenetic analysis indicated that pioneers occur more frequently in clades where phosphorus associations are overdispersed as compared with the overall tree community, suggesting that selection on phosphorus acquisition and use may be strongest for pioneer species with high phosphorus demand. Our results show that phosphorus-dependent growth rates provide an additional explanation for the regional distribution of tree species in Panama, and possibly elsewhere.

Advanced oxidation of polycyclic aromatic hydrocarbons in tropical soil: Self-catalytic utilization of natural iron contents in an oxygenation reactor supported with persulfate.

The catalysts derived from natural iron minerals in the advanced oxidation process offer several advantages. However, their utilization in soil remediation is restricted due to the presence of soil impurities, which can inhibit the catalytic activity of these minerals. The soils in tropical regions exhibit lower organic matter content, limited cation exchange capacity, and are non-saline, this enhances the efficiency of utilizing natural iron minerals from tropical soil as a catalyst. In this regard, the catalytic potential of naturally iron-bearing tropical soil was investigated to eliminate phenanthrene (PHE), pyrene (PYR), and benzo[α]pyrene (B[α]P) using an oxygenated reactor supported with persulfate (PS). The system showed an efficient performance, and the removal efficiencies under the optimum conditions were 81 %, 73 %, and 86 % for PHE, PYR, and B[α]P, respectively. This indicated that the catalytic activity of iron was working efficiently. However, there were changes in the soil characteristics after the remediation process such as a significant reduction in iron and aluminum contents. The scavenging experiments demonstrated that HO• had a minor role in the oxidation process, SO4•- and O2•- emerged as the primary reactive species responsible for the effective degradation of the PAHs. Moreover, the by-products were monitored after soil remediation to evaluate their toxicity and to propose degradation pathways. The Mutagenicity test showed that two by-products from each PHE and B[α]P had positive results, while only one by-product of PYR showed positive. The toxicity tests of oral rat LD50 and developmental toxicity tests revealed that certain PAHs by-products could be more toxic from the parent pollutant itself. This study represents a notable progression in soil remediation by providing a step forward in the application of the advanced oxidation process (AOP) without requiring additional catalysts to activate oxidants and degrade pollutant PAHs from the soil.

Remediation of benzo[α]pyrene contaminated soil using iron naturally bearing in tropical soil: A new frontier in catalyst-free in soil remediation.

Nature iron is considered one of the promising catalysts in advanced oxidation processes (AOPs) that are utilized for soil remediation from polycyclic aromatic hydrocarbons (PAHs). However, the existence of anions, cations, and organic matter in soils considered impurities that restricted the utilization of iron that was harnessed naturally in the soil matrix and reduced the catalytic performance. In this regard, tropical soil naturally containing iron and relatively poor with impurities was artificially contaminated with 100 mg/50 g benzo[α]pyrene (B[α]P) and remediated using a slurry phase reactor supported with persulfate (PS). The results indicated that tropical soil containing iron and relatively poor with impurities capable of activating the oxidants and formation of radicals which successfully degraded B[α]P. The optimum removal result was 86% and obtained under the following conditions airflow = 260 mL/min, temperature 55 °C, pH 7, and [PS]0 = 1.0 g/L, at the same experimental conditions soil organic matter (SOM) mineralization was 48%. After the remediation process, there was a significant reduction in iron and aluminum contents, which considered the drawbacks of this system. Experiments to scavenge reactive species highlighted O2•- and SO4•- as the main radicals that oxidized B[α]P. Additionally, monitoring of by-products post-remediation aimed to assess toxicity and elucidate degradation pathways. Mutagenicity tests yielded positive results for two B[α]P by-products. The toxicity tests considered were the lethal concentration of 50% (LC50 96 h) for fat-head minnows revealed that all B[α]P by-products were less toxic than the parent pollutant itself. This research marks a significant advancement in soil remediation by advancing the use of the AOP method, removing the requirement for additional catalysts in the AOP system for the removal of B[α]P from soil.

Highly weathered mineral soils have highest transfer risk of radiocaesium contamination after a nuclear accident: A global soil-plant study.

Accidental release of radiocaesium (137Cs) from nuclear power plants may result in long-term contamination of environmental and food production systems. Assessment of food chain contamination with 137Cs relies on 137Cs soil-to-plant transfer data and models mainly available for regions affected by the Chornobyl and Fukushima accidents. Similar data and models are lacking for other regions. Such information is needed given the global expansion of nuclear energy. We collected 38 soils worldwide of contrasting parent materials and weathering stages. The soils were spiked with 137Cs and sown with ryegrass in greenhouse conditions. The 137Cs grass-soil concentration ratio varied four orders of magnitude among soils. It was highest in Ferralsols due to the low 137Cs interception potential of kaolinite clay and the low exchangeable potassium in these soils. Our results demonstrate, for the first time, the high plant uptake of 137Cs in tropical soils. The most recent 137Cs transfer model, mainly calibrated to temperate soils dominated by weathered micas, poorly predicts the underlying processes in tropical soils but, due to compensatory effect, still reasonably well predicts 137Cs bioavailability across all soils (R2 = 0.8 on a log-log scale).

Terabase-Scale Coassembly of a Tropical Soil Microbiome.

Petabases of environmental metagenomic data are publicly available, presenting an opportunity to characterize complex environments and discover novel lineages of life. Metagenome coassembly, in which many metagenomic samples from an environment are simultaneously analyzed to infer the underlying genomes' sequences, is an essential tool for achieving this goal. We applied MetaHipMer2, a distributed metagenome assembler that runs on supercomputing clusters, to coassemble 3.4 terabases (Tbp) of metagenome data from a tropical soil in the Luquillo Experimental Forest (LEF), Puerto Rico. The resulting coassembly yielded 39 high-quality (>90% complete, <5% contaminated, with predicted 23S, 16S, and 5S rRNA genes and ≥18 tRNAs) metagenome-assembled genomes (MAGs), including two from the candidate phylum Eremiobacterota. Another 268 medium-quality (≥50% complete, <10% contaminated) MAGs were extracted, including the candidate phyla Dependentiae, Dormibacterota, and Methylomirabilota. In total, 307 medium- or higher-quality MAGs were assigned to 23 phyla, compared to 294 MAGs assigned to nine phyla in the same samples individually assembled. The low-quality (<50% complete, <10% contaminated) MAGs from the coassembly revealed a 49% complete rare biosphere microbe from the candidate phylum FCPU426 among other low-abundance microbes, an 81% complete fungal genome from the phylum Ascomycota, and 30 partial eukaryotic MAGs with ≥10% completeness, possibly representing protist lineages. A total of 22,254 viruses, many of them low abundance, were identified. Estimation of metagenome coverage and diversity indicates that we may have characterized ≥87.5% of the sequence diversity in this humid tropical soil and indicates the value of future terabase-scale sequencing and coassembly of complex environments. IMPORTANCE Petabases of reads are being produced by environmental metagenome sequencing. An essential step in analyzing these data is metagenome assembly, the computational reconstruction of genome sequences from microbial communities. "Coassembly" of metagenomic sequence data, in which multiple samples are assembled together, enables more complete detection of microbial genomes in an environment than "multiassembly," in which samples are assembled individually. To demonstrate the potential for coassembling terabases of metagenome data to drive biological discovery, we applied MetaHipMer2, a distributed metagenome assembler that runs on supercomputing clusters, to coassemble 3.4 Tbp of reads from a humid tropical soil environment. The resulting coassembly, its functional annotation, and analysis are presented here. The coassembly yielded more, and phylogenetically more diverse, microbial, eukaryotic, and viral genomes than the multiassembly of the same data. Our resource may facilitate the discovery of novel microbial biology in tropical soils and demonstrates the value of terabase-scale metagenome sequencing.

Phosphorus fractions and iron oxides responsible for the variations in the Cd retention capacity in tropical soil aggregates under different cropping patterns.

The environmental behavior of Cd in soil has been widely studied because of its close relationship with food security and soil environmental pollution. In this study, the roles of P fractions and Fe oxides in the retention of Cd in typical tropical soil from five cropping patterns were investigated. Although there was no evident relationship between the Cd adsorption capacity and soil aggregate particle sizes, strong spatial associations of P, Fe, and Cd at the soil aggregates were observed via energy dispersive spectroscopy analysis. Among five cropping patterns, citrus plantations exhibited highest ratios (calculated by pixel area) of P overlapped with Cd (8.61%) and Fe overlapped with Cd (9.53%) in the microaggregates. Furthermore, the random forest model revealed that humic P and labile organic P greatly contributed to the sorptivity of Cd2+ by < 0.053 mm (13.3%) and 0.25-0.053 mm (13.4%) soil aggregates, respectively. Compared with the P fractions in different-sized soil aggregates, the contribution of Fe oxides to the sorption of Cd2+ by soil aggregates was more significant. Amorphous ferric oxide had the most significant contribution to the sorptivity of Cd2+ by < 0.053 mm (26.0%), 0.25-0.053 mm (23.0%), 2.0-0.25 mm (25.1%), and > 2.0 mm (33.9%) soil aggregates.