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1.
J Environ Manage ; 297: 113355, 2021 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-34375225

RESUMEN

Semi-arid agricultural soils have increasingly been subjected to urban sewage sludge (USS) applications due to accelerated soil depletion and shortages in manure supply. Research studies addressing USS reuse have mostly been conducted in cropping systems and focused on changes in topsoil properties of a given texture. Therefore, sludge-soil interactions could be largely influenced by the presence of plants, soil particle composition and depth. In this field study, two agricultural soils (sandy, S and sandy loam, SL) received simultaneously four annual USS applications of 40, 80, and 120 t ha-1 year-1 in absence of vegetation. Outcomes showed the increase of carbon and macronutrients in both soils proportionally to USS dose especially in the topsoil profile (0-20 cm). Subsoil (20-40 cm) was similarly influenced by sludge rates, showing comparable variations of fertility parameters though at significant lower levels. The depth-dependent improvement of soil fertility in both layers enhanced the microbiological properties accordingly, with significant variations in soil SL characterized by a higher clay content than soil S. Besides, positive correlations between increases in sludge dose, salinity, trace metals, and enzyme activities in both soils indicate that excessive sludge doses did not cause soil degradation or biotoxic effects under the described experimental conditions. In particular and despite high geoaccumulation indices of Ni in both soils and profiles, the global concentrations of Cu, Ni, Pb, and Zn were still below threshold levels for contaminated soils. In addition, the maintenance of pH values within neutral range and the increase of organic matter content with respect to control would have further reduced metal availability in amended soils. Therefore, we could closely investigate the effects of texture and depth on the intrinsic resilience of each soil to cope with repetitive USS applications.


Asunto(s)
Metales Pesados , Contaminantes del Suelo , Oligoelementos , Agricultura , Metales Pesados/análisis , Aguas del Alcantarillado , Suelo , Contaminantes del Suelo/análisis
2.
Extremophiles ; 22(1): 47-57, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29101684

RESUMEN

The data reported in this paper are among the first relating to the microbiology of hyper-arid, very high altitude deserts and they provide base line information on the structure of actinobacterial communities. The high mountain Cerro Chajnantor landscape of the Central Andes in northern Chile is exposed to the world's most intense levels of solar radiation and its impoverished soils are severely desiccated. The purpose of this research was to define the actinobacterial community structures in soils at altitudes ranging from 3000 to 5000 m above sea level. Pyrosequencing surveys have revealed an extraordinary degree of microbial dark matter at these elevations that includes novel candidate actinobacterial classes, orders and families. Ultraviolet-B irradiance and a range of edaphic factors were found to be highly significant in determining community compositions at family and genus levels of diversity.


Asunto(s)
Actinobacteria/aislamiento & purificación , Altitud , Ambientes Extremos , Microbiota , Actinobacteria/clasificación , Actinobacteria/genética , Suelo/química , Microbiología del Suelo , Luz Solar
3.
Environ Geochem Health ; 40(5): 1841-1851, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-29948536

RESUMEN

Rubidium and lithium are rather rare elements in environmental research, despite their affiliation with a group of chemically active metals and the abundance of Rb in the environment. A growing body of evidence, although controversial, has indicated that both elements possess unique essential and neurophysiological characteristics in biota and humans. Both elements may concentrate in soil and vegetation of sub-arid environments. We investigated the content and (potential) availability of Rb and Li in the soils and natural waters of Galilee, the Coastal Plain, and the northern Negev of Israel. A newly developed chromatographic technique for the separation of truly dissolved Rb and Li compounds has been applied. High concentrations of Rb, together with high values of the potentially vital Rb-to-K ratio, were found in the soils, the soil solutions, rainwater, throughfall water, and the plant litter leachates, but not in the surface and spring waters. This may indicate a sequestration of Rb in the local soils and a semi-closed Rb turnover in the soil-plant system with a major input from sea aerosols. Low Li bulk and available concentrations were determined in all the natural compartments. Possible implications of such specific environmental features on the local population health were discussed.


Asunto(s)
Litio/análisis , Rubidio/análisis , Suelo/química , Exposición a Riesgos Ambientales , Humanos , Israel , Litio/toxicidad , Plantas/química , Potasio/análisis , Rubidio/toxicidad , Agua/química
4.
Bull Environ Contam Toxicol ; 100(5): 708-714, 2018 May.
Artículo en Inglés | MEDLINE | ID: mdl-29536119

RESUMEN

This study was conducted to explore the relationships between magnetic susceptibility and some soil heavy metals concentrations in various particle sizes in an industrial site, central Iran. Soils were partitioned into five fractions (< 28, 28-75, 75-150, 150-300, and 300-2000 µm). Heavy metals concentrations including Zn, Pb, Fe, Cu, Ni and Mn and magnetic susceptibility were determined in bulk soil samples and all fractions in 60 soil samples collected from the depth of 0-5 cm. The studied heavy metals except for Pb and Fe displayed a substantial enrichment in the < 28 µm. These two elements seemed to be independent of the selected size fractions. Magnetic minerals are specially linked with medium size fractions including 28-75, 75-150 and 150-300 µm. The highest correlations were found for < 28 µm and heavy metals followed by 150-300 µm fraction which are susceptible to wind erosion risk in an arid environment.


Asunto(s)
Monitoreo del Ambiente , Metales Pesados/análisis , Contaminantes del Suelo/análisis , Industrias , Irán , Fenómenos Magnéticos , Tamaño de la Partícula , Suelo/química
5.
Environ Geochem Health ; 39(6): 1305-1324, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28444474

RESUMEN

Soil reclamation via additives can cause contradictory effects on the mobilization of toxic elements in soils under dry and wet conditions. Therefore, our aim was to investigate the impact of compost and sulfur in two rates (1.25 and 2.5%) on fractionation, mobilization, and phyto-availability of cadmium (Cd) and nickel (Ni) to sorghum (dry soil) and barnyard grass (wet soil) in a fluvial soil spiked with 25 mg Cd or 200 mg Ni/kg soil. Compost decreased the solubility and mobilization of Cd (especially in dry soil) and Ni (in both soils). Sulfur increased the solubility of Cd (31% in dry soil-49% in wet soil) and Ni (4.6% in wet soil-8.7% in dry soil). Sulfur altered the carbonate fraction of Cd to the soluble fraction and the residual fraction of Cd and Ni to the non-residual fraction. Compost decreased Cd and increased Ni in sorghum, but enhanced Cd and degraded Ni in grass. Sulfur increased Cd and Ni in both plants, and the increasing rate of Cd was higher in grass than in sorghum, while Ni was higher in sorghum than in grass. These results suggest that compost can be used as an immobilizing agent for Cd in the dry soil and Ni in the wet soil; however, it might be used as mobilizing agent for Cd in the wet soil and Ni in the dry soil. Sulfur (with rate 2.5%) can be used for enhancing the phyto-extraction of Cd and Ni (especially Cd) from contaminated alkaline soils.


Asunto(s)
Cadmio/metabolismo , Compostaje , Echinochloa/metabolismo , Níquel/metabolismo , Contaminantes del Suelo/metabolismo , Suelo/química , Sorghum/metabolismo , Azufre/química , Disponibilidad Biológica , Biomasa , Agua Dulce , Concentración de Iones de Hidrógeno , Límite de Detección , Humedales
6.
Sci Total Environ ; : 176173, 2024 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-39260494

RESUMEN

Arid soils present unique challenges and opportunities for studying microbial diversity and bioactive potential due to the extreme environmental conditions they bear. This review article investigates soil metagenomics as an emerging tool to explore complex microbial dynamics and unexplored bioactive potential in harsh environments. Utilizing advanced metagenomic techniques, diverse microbial populations that grow under extreme conditions such as high temperatures, salinity, high pH levels, and exposure to metals and radiation can be studied. The use of extremophiles to discover novel natural products and biocatalysts emphasizes the role of functional metagenomics in identifying enzymes and secondary metabolites for industrial and pharmaceutical purposes. Metagenomic sequencing uncovers a complex network of microbial diversity, offering significant potential for discovering new bioactive compounds. Functional metagenomics, connecting taxonomic diversity to genetic capabilities, provides a pathway to identify microbes' mechanisms to synthesize valuable secondary metabolites and other bioactive substances. Contrary to the common perception of desert soil as barren land, the metagenomic analysis reveals a rich diversity of life forms adept at extreme survival. It provides valuable findings into their resilience and potential applications in biotechnology. Moreover, the challenges associated with metagenomics in arid soils, such as low microbial biomass, high DNA degradation rates, and DNA extraction inhibitors and strategies to overcome these issues, outline the latest advancements in extraction methods, high-throughput sequencing, and bioinformatics. The importance of metagenomics for investigating diverse environments opens the way for future research to develop sustainable solutions in agriculture, industry, and medicine. Extensive studies are necessary to utilize the full potential of these powerful microbial communities. This research will significantly improve our understanding of microbial ecology and biotechnology in arid environments.

7.
Environ Sci Pollut Res Int ; 31(15): 22759-22773, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38409383

RESUMEN

Petroleum hydrocarbon (PHC) contamination is a widespread and severe environmental issue affecting many countries' resource sectors. PHCs are mixtures of hydrocarbon compounds with varying molar masses that naturally attenuate at different rates. Lighter fractions attenuate first, followed by medium-molar-mass constituents, while larger molecules remain for longer periods. This results in significant regulatory challenges concerning residual hydrocarbons in long-term contaminated soils. This study examined the potential risks associated with residual PHC and its implications for risk-based management of heavily contaminated soils (23,000-26,000 mg PHC/kg). Ecotoxicological properties, such as seedling emergence and growth of two native plant species-small Flinders grass (Iseilema membranaceum) and ruby saltbush (Enchylaena tomentosa)-and earthworm survival tests in PHC-contaminated soils, were assessed. Additionally, the effects of aging on the attenuation of PHC in contaminated soils were evaluated. Toxicity responses of plant growth parameters were determined as no-observed-effect concentrations: 75%-100% for seedling emergence, < 25%-75% for plant shoot height, and 75%-100% for earthworm survival. After 42 weeks of aging, the total PHC levels in weathered soils decreased by 14% to 30% and by 67% in diesel-spiked soil due to natural attenuation. Dehydrogenase enzyme activity in soils increased during the initial aging period. Furthermore, a clear shift of bacterial communities was observed in the soils following aging, including enrichment of PHC-resistant and -utilizing bacteria-for example, Nocardia sp. This study underscores the potential of natural attenuation for eco-friendly and cost-effective soil management, underlining that its success depends on site-specific factors like water content and nutrient availability. Therefore, we recommend detailed soil assessments to evaluate these conditions prior to adopting a risk-based management approach.


Asunto(s)
Petróleo , Contaminantes del Suelo , Contaminantes del Suelo/análisis , Hidrocarburos/análisis , Contaminación Ambiental , Suelo , Monitoreo del Ambiente/métodos , Petróleo/análisis , Bacterias , Biodegradación Ambiental , Microbiología del Suelo
8.
Sci Total Environ ; 916: 170333, 2024 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-38278269

RESUMEN

Recently intensified oil exploitation has resulted in the discharge of large amounts of wastewater containing high concentrations of organic matter and nutrients into the receiving aquatic and soil environments; however, the effects of oilfield-produced water on the soil microbiota are poorly understood. In this study, we conducted a comprehensive analysis to reveal the composition and diversity of the microbial community at horizontal and vertical scales in a typical arid soil receiving oilfield-produced water in Northwest China. Oilfield-produced water caused an increase in microbial diversity at the horizontal scale, and the communities in the topsoil were more variable than those in the subsoil. Additionally, the microbial taxonomic composition differed significantly between the near- and far-producing water soils, with Proteobacteria and Halobacterota dominating the water-affected and reference soil communities, respectively. Soil property analysis revealed that pH, salt, and total organic content influenced the bacterial communities. Furthermore, the oil-produced water promoted the complexity and modularity of distance-associated microbial networks, indicating positive interactions for soil ecosystem function, but not for irrigation or livestock watering. This is the first detailed examination of the microbial communities in soil receiving oilfield-produced water, providing new insights for understanding the microbial spatial distributions in receiving arid soils.


Asunto(s)
Microbiota , Suelo , Suelo/química , Agua , Yacimiento de Petróleo y Gas , Bacterias , Microbiología del Suelo
9.
Trends Plant Sci ; 28(11): 1218-1221, 2023 11.
Artículo en Inglés | MEDLINE | ID: mdl-37741740

RESUMEN

To limit the effects of global warming, arid lands, which constitute approximately one-third of terrestrial surfaces and are not utilized for agriculture, could serve as an effective method for long-term carbon (C) storage. We propose that soil-plant-microbiome engineering with oxalogenic plants and oxalotrophic microbes could facilitate C sequestration on a global scale.


Asunto(s)
Agricultura , Secuestro de Carbono , Suelo , Plantas , Carbono
10.
Sci Total Environ ; 892: 164785, 2023 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-37302588

RESUMEN

Extreme environmental conditions make soils of the hyper-arid Atacama Desert one of the most hostile habitats for life on the planet. During the short intervals of moisture availability that occur, it remains unresolved how soil microorganisms physiologically respond to such dramatic environmental changes. Therefore, we simulated a precipitation event - without (H2O) and with (H2O + C) labile carbon (C) supplementation - and investigated the responses in microbial communities (using phospholipid fatty acids (PLFAs) and archaeal glycerol dialkyl glycerol tetraether (GDGTs)) and physiology (by means of respiration, bacterial and fungal growth and C-use efficiency (CUE)) during a five-day incubation. We demonstrated that bacterial and fungal growth does occur in these extreme soils following rewetting, albeit at 100-10,000-fold lower rates compared to previously studied soil systems. C supplementation increased levels of bacterial growth and respiration responses by 5- and 50-fold, respectively, demonstrating a C-limited microbial decomposer community. While the microbial CUE following rewetting was c. 14 %, the addition of labile C during rewetting resulted in a substantial reduction (c. 1.6 %). Consistent with these interpretations, the PLFA composition clearly shifted from saturated towards more unsaturated and branched PLFAs, which could arise from (i) a physiological adaptation of the cell membrane to changing osmotic conditions or (ii) a community composition shift. Significant increases in total PLFA concentrations were solely found with H2O + C addition. Contrary to other recent studies, we found evidence for a metabolically active archaeal community in these hyper-arid soils upon rewetting. We conclude that (i) microorganisms in this extreme soil habitat can be activated and grow within days following rewetting, (ii) available C is the limiting factor for microbial growth and biomass gains, and (iii) that an optimization of tolerating the extreme conditions while maintaining a high CUE comes at the expense of very poor resource-use efficiency during high resource availability.


Asunto(s)
Archaea , Microbiota , Suelo , Carbono , Glicerol , Microbiología del Suelo , Bacterias , Ácidos Grasos , Fosfolípidos
11.
FEMS Microbiol Ecol ; 99(2)2023 01 24.
Artículo en Inglés | MEDLINE | ID: mdl-36690342

RESUMEN

Microbial communities respond to changes in environmental conditions; however, how compositional shifts affect ecosystem processes is still not well-understood and it is often assumed that different microbial communities will function equally under similar environmental conditions. We evaluated this assumption of functional redundancy using biological soil crusts (BSCs) from two arid ecosystems in Mexico with contrasting climate conditions (hot and cold deserts) following an experimental approach both in the field (reciprocal transplants) and in laboratory conditions (common garden), focusing on the community's composition and potential for nitrogen fixation. Potential of nitrogen fixation was assessed through the acetylene reduction assay. Community composition and diversity was determined with T-RFLPs of nifH gene, high throughput sequencing of 16S rRNA gene amplicons and metagenomic libraries. BSCs tended to show higher potential nitrogen fixation rates when experiencing temperatures more similar to their native environment. Moreover, changes in potential nitrogen fixation, taxonomic and functional community composition, and diversity often depended on an interactive effect of origin of the communities and the environment they experienced. We interpret our results as legacy effects that result from ecological specialization of the BSC communities to their native environment. Overall, we present evidence of nonfunctional redundancy of BSCs in terms of nitrogen fixation.


Asunto(s)
Cianobacterias , Microbiota , Ecosistema , Fijación del Nitrógeno , Cianobacterias/genética , Clima Desértico , Suelo , ARN Ribosómico 16S/genética , Microbiología del Suelo , Microbiota/genética , Nitrógeno
12.
Front Microbiol ; 12: 648455, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33959111

RESUMEN

Dryland ecosystems are sensitive to perturbations and generally slow to recover post disturbance. The microorganisms residing in dryland soils are especially important as they contribute to soil structure and nutrient cycling. Disturbance can have particularly strong effects on dryland soil structure and function, yet the natural resistance and recovery of the microbial components of dryland soils has not been well documented. In this study, the recovery of surface soil bacterial communities from multiple physical and environmental disturbances is assessed. Samples were collected from three field sites in the vicinity of Moab, UT, United States, 6 to 7 years after physical and climate disturbance manipulations had been terminated, allowing for the assessment of community recovery. Additionally, samples were collected in a transect that included three habitat patches: the canopy zone soils under the dominant shrubs, the interspace soils that are colonized by biological soil crusts, and edge soils at the plot borders. Field site and habitat patch were significant factors structuring the bacterial communities, illustrating that sites and habitats harbored unique soil microbiomes. Across the different sites and disturbance treatments, there was evidence of significant bacterial community recovery, as bacterial biomass and diversity were not significantly different than control plots. There was, however, a small number of 16S rRNA gene amplicon sequence variants that distinguished particular treatments, suggesting that legacy effects of the disturbances still remained. Taken together, these data suggest that dryland bacterial communities may possess a previously unappreciated potential to recover within years of the original disturbance.

13.
Microbiol Spectr ; 9(2): e0067821, 2021 10 31.
Artículo en Inglés | MEDLINE | ID: mdl-34668733

RESUMEN

Rhizosphere and root-associated bacteria are key components of crop production and sustainable agriculture. However, utilization of these beneficial bacteria is often limited by conventional culture techniques because a majority of soil microorganisms cannot be cultured using standard laboratory media. Therefore, the purpose of this study was to improve culturability and investigate the diversity of the bacterial communities from the wheat rhizosphere microbiome collected from three locations in Egypt with contrasting soil characteristics by using metagenomic analysis and improved culture-based methods. The improved strategies of the culture-dependent approach included replacing the agar in the medium with gellan gums and modifying its preparation by autoclaving the phosphate and gelling agents separately. Compared to the total operational taxonomic units (OTUs) observed from the metagenomic data sets derived from the three analyzed soils, 1.86 to 2.52% of the bacteria were recovered using the modified cultivation strategies, whereas less than 1% were obtained employing the standard cultivation protocols. Twenty-one percent of the cultivable isolates exhibited multiple plant growth-promoting (PGP) properties, including P solubilization activity and siderophore production. From the metagenomic analysis, the most abundant phyla were Proteobacteria, Actinobacteria, Chloroflexi, Bacteroidetes, and Firmicutes. Moreover, the relative abundance of the specific bacterial taxa was correlated with the soil characteristics, demonstrating the effect of the soil in modulating the plant rhizosphere microbiome. IMPORTANCE Bacteria colonizing the rhizosphere, a narrow zone of soil surrounding the root system, are known to have beneficial effects in improving the growth and stress tolerance of plants. However, most bacteria in natural environments, especially those in rhizosphere soils, are recalcitrant to cultivation using traditional techniques, and thus their roles in soil health and plant growth remain unexplored. Hence, investigating new culture media and culture conditions to bring "not-yet-cultured" species into cultivation and to identify new functions is still an important task for all microbiologists. To this end, we describe improved cultivation protocols that increase the number and diversity of cultured bacteria from the rhizosphere of wheat plants. Using such approaches will lead to new insights into culturing more beneficial bacteria that live in the plant rhizosphere, in so doing creating greater opportunities not only for field application but also for promoting sustainability.


Asunto(s)
Bacterias/clasificación , Microbiota , Rizosfera , Microbiología del Suelo , Triticum/microbiología , Agricultura , Bacterias/genética , Biodiversidad , Metagenoma , Metagenómica , Microbiota/genética , ARN Ribosómico 16S , Suelo
14.
Microorganisms ; 8(4)2020 Apr 09.
Artículo en Inglés | MEDLINE | ID: mdl-32283666

RESUMEN

Calicotome villosa is a spontaneous Mediterranean legume that can be a good candidate as pioneer plants to limit regression of vegetation cover and loss of biodiversity in Tunisian arid soils. In order to grow legumes in such soils, pairing rhizobia and nodule associated bacteria (NAB) might provide numerous advantages. In this work, cultivable biodiversity of rhizobial symbionts and NAB in nodules of C. villosa plants growing in five arid regions of south Tunisia was characterized. Phylogenetic analysis using 16S rDNA gene, dnak, recA and nodD sequences separated nodule-forming bacteria in six clades associated to genera Ensifer, Neorhizobium, Phyllobacterium and Rhizobium. Among NAB, the strain Variovorax sp. CT7.15 was selected due to its capacity to solubilise phosphate and, more interestingly, its high level of aminocyclopropane-1-carboxylate deaminase (ACC deaminase) activity. C. villosa plants were inoculated with representative rhizobia of each phylogenetic group and co-inoculated with the same rhizobia and strain CT7.15. Compared with single rhizobia inoculation, co-inoculation significantly improved plant growth and nodulation, ameliorated plant physiological state and increased nitrogen content in the plants, independently of the rhizobia used. These results support the benefits of pairing rhizobia and selected NAB to promote legume growth in arid or degraded soils.

15.
Microorganisms ; 7(2)2019 Jan 24.
Artículo en Inglés | MEDLINE | ID: mdl-30682831

RESUMEN

The incidence of coccidioidomycosis, also known as Valley Fever, is increasing in the Southwestern United States and Mexico. Despite considerable efforts, a vaccine to protect humans from this disease is not forthcoming. The aim of this project was to isolate and phylogenetically compare bacterial species that could serve as biocontrol candidates to suppress the growth of Coccidioides immitis, the causative agent of coccidioidomycosis, in eroded soils or in areas close to human settlements that are being developed. Soil erosion in Coccidioides endemic areas is leading to substantial emissions of fugitive dust that can contain arthroconidia of the pathogen and thus it is becoming a health hazard. Natural microbial antagonists to C. immitis, that are adapted to arid desert soils could be used for biocontrol attempts to suppress the growth of the pathogen in situ to reduce the risk for humans and animals of contracting coccidioidomycosis. Bacteria were isolated from soil samples obtained near Bakersfield, California. Subsequently, pairwise challenge assays with bacterial pure cultures were initially performed against Uncinocarpus reesii, a non-pathogenic relative of C. immitis on media plates. Bacterial isolates that exhibited strongly antifungal properties were then re-challenged against C. immitis. Strongly anti-C. immitis bacterial isolates related to Bacillus subtilis and Streptomyces spp. were isolated, and their antifungal spectrum was investigated using a selection of environmental fungi.

16.
Front Microbiol ; 8: 1227, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28713354

RESUMEN

Finding fresh, sterilized rocks provides ecologists with a clean slate to test ideas about first colonization and the evolution of soils de novo. Lava has been used previously in first colonizer studies due to the sterilizing heat required for its formation. However, fresh lava typically falls upon older volcanic successions of similar chemistry and modal mineral abundance. Given enough time, this results in the development of similar microbial communities in the newly erupted lava due to a lack of contrast between the new and old substrates. Meteorites, which are sterile when they fall to Earth, provide such contrast because their reduced and mafic chemistry commonly differs to the surfaces on which they land; thus allowing investigation of how community membership and structure respond to this new substrate over time. We conducted 16S rRNA gene analysis on meteorites and soil from the Nullarbor Plain, Australia. We found that the meteorites have low species richness and evenness compared to soil sampled from directly beneath each meteorite. Despite the meteorites being found kilometers apart, the community structure of each meteorite bore more similarity to those of other meteorites (of similar composition) than to the community structure of the soil on which it resided. Meteorites were dominated by sequences that affiliated with the Actinobacteria with the major Operational Taxonomic Unit (OTU) classified as Rubrobacter radiotolerans. Proteobacteria and Bacteroidetes were the next most abundant phyla. The soils were also dominated by Actinobacteria but to a lesser extent than the meteorites. We also found OTUs affiliated with iron/sulfur cycling organisms Geobacter spp. and Desulfovibrio spp. This is an important finding as meteorites contain abundant metal and sulfur for use as energy sources. These ecological findings demonstrate that the structure of the microbial community in these meteorites is controlled by the substrate, and will not reach homeostasis with the Nullarbor community, even after ca. 35,000 years. Our findings show that meteorites provide a unique, sterile substrate with which to test ideas relating to first-colonizers. Although meteorites are colonized by microorganisms, the microbial population is unlikely to match the community of the surrounding soil on which they fall.

17.
Data Brief ; 8: 1448-53, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27617281

RESUMEN

This article contains a statistically analyzed dataset of the heavy metals including Cr, Co, Ni, Cu, Zn and Pb contents of near-surface (~30 cm depth) soils in a Cu-Ni prospecting field at Airstrip North, Central Botswana. The soils developed on paragneisses and amphibolites parent materials in a semi-arid environment with hardveld vegetation, "The geology of the Topisi area" (Key et al., 1994) [1]. Grid sampling was adopted in the field data collection. Heavy metals were determined using the relatively new portable x-ray fluorescence spectrometer (Delta Premium, 510,890, USA) technology in a "soil" mode. The data presented was obtained from the average reading of two soil samples collected from same point but passed through sieves.

18.
PeerJ ; 4: e2459, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27652001

RESUMEN

Arid ecosystems are characterized by high spatial heterogeneity, and the variation among vegetation patches is a clear example. Soil biotic and abiotic factors associated with these patches have also been well documented as highly heterogeneous in space. Given the low vegetation cover and little precipitation in arid ecosystems, soil microorganisms are the main drivers of nutrient cycling. Nonetheless, little is known about the spatial distribution of microorganisms and the relationship that their diversity holds with nutrients and other physicochemical gradients in arid soils. In this study, we evaluated the spatial variability of soil microbial diversity and chemical parameters (nutrients and ion content) at local scale (meters) occurring in a gypsum-based desert soil, to gain knowledge on what soil abiotic factors control the distribution of microbes in arid ecosystems. We analyzed 32 soil samples within a 64 m(2) plot and: (a) characterized microbial diversity using T-RFLPs of the bacterial 16S rRNA gene, (b) determined soil chemical parameters, and (c) identified relationships between microbial diversity and chemical properties. Overall, we found a strong correlation between microbial composition heterogeneity and spatial variation of cations (Ca(2), K(+)) and anions (HCO[Formula: see text], Cl(-), SO[Formula: see text]) content in this small plot. Our results could be attributable to spatial differences of soil saline content, favoring the patchy emergence of salt and soil microbial communities.

19.
Data Brief ; 9: 764-770, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27844043

RESUMEN

Geospatial dataset of trace elements including manganese (Mn), iron (Fe), titanium (Ti), rubidium (Rb), strontium (Sr), thorium (Th), Vanadium (V) and Zirconium (Zr) of near-surface soils in a Cu-Ni prospecting field at Airstrip North, Central Botswana were statistically analysed. Grid sampling method was used in the field data collection. The relatively new portable X-ray fluorescence spectrometer (Delta Premium, 510890, USA) technology in a "soil" mode was used to measure the concentrations of trace elements in the soils. The data presented was obtained from the average reading of two soil samples collected from same point but passed through sieves. Sequel to DOI: 10.1016/j.dib.2016.08.026 (P.N. Eze, V.S. Mokosomani, T.K. Udeigwe, O.F. Oyedele, 2016) [1].

20.
Int J Biol Macromol ; 65: 362-8, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24502924

RESUMEN

ZnO nanoparticle induced exopolysaccharide (EPS) production from Bacillus subtilis strain JCT1 (NCBI GenBank Accession No. JN194187) is a novel approach for arid soil applications. In the series of investigations, environmentally benign protocol was followed for the synthesis of ZnO nanoparticles using extracellular enzymes obtained from Aspergillus fumigatus TFR8. Putative characterization techniques were employed for confirmation of size, shape, surface structure, crystalline nature and elemental proportion of ZnO nanoparticles. Results established an average size of ZnO nanoparticles to be 2.9 nm at least at one dimension and oblate spherical in structure. The qualitative composition of the nanoparticles exhibited 97.5% Zn element atom percentage. Biosynthesized ZnO nanoparticles enhanced exopolysaccharide production by 596.1% as compared to control and further EPS amelioration led to enhanced soil aggregation (up to 82%), moisture retention (10.7-14.2%) and soil organic carbon. Soil aggregation stability was further confirmed by Fourier transform infra-red spectroscopy. A possible ZnO nanoparticle mediated biological mechanism for enhancing exopolysaccharide production has been discussed.


Asunto(s)
Bacillus subtilis/efectos de los fármacos , Bacillus subtilis/metabolismo , Nanopartículas , Polisacáridos/biosíntesis , Suelo/química , Óxido de Zinc/química , Óxido de Zinc/farmacología , Sequías , Óxido de Zinc/síntesis química
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