Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Resultados 1 - 20 de 90
Filtrar
1.
Proteins ; 89(9): 1079-1098, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-33826169

RESUMEN

Caprolactamase is the first enzyme in the caprolactam degradation pathway of Pseudomonas jessenii. It is composed of two subunits (CapA and CapB) and sequence-related to other ATP-dependent enzymes involved in lactam hydrolysis, like 5-oxoprolinases and hydantoinases. Low sequence similarity also exists with ATP-dependent acetone- and acetophenone carboxylases. The caprolactamase was produced in Escherichia coli, isolated by His-tag affinity chromatography, and subjected to functional and structural studies. Activity toward caprolactam required ATP and was dependent on the presence of bicarbonate in the assay buffer. The hydrolysis product was identified as 6-aminocaproic acid. Quantum mechanical modeling indicated that the hydrolysis of caprolactam was highly disfavored (ΔG0 '= 23 kJ/mol), which explained the ATP dependence. A crystal structure showed that the enzyme exists as an (αß)2 tetramer and revealed an ATP-binding site in CapA and a Zn-coordinating site in CapB. Mutations in the ATP-binding site of CapA (D11A and D295A) significantly reduced product formation. Mutants with substitutions in the metal binding site of CapB (D41A, H99A, D101A, and H124A) were inactive and less thermostable than the wild-type enzyme. These residues proved to be essential for activity and on basis of the experimental findings we propose possible mechanisms for ATP-dependent lactam hydrolysis.


Asunto(s)
Adenosina Trifosfato/química , Amidohidrolasas/química , Proteínas Bacterianas/química , Caprolactama/química , Subunidades de Proteína/química , Pseudomonas/enzimología , Adenosina Trifosfato/metabolismo , Amidohidrolasas/genética , Amidohidrolasas/metabolismo , Secuencia de Aminoácidos , Ácido Aminocaproico/química , Ácido Aminocaproico/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Caprolactama/metabolismo , Clonación Molecular , Cristalografía por Rayos X , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Hidrólisis , Modelos Moleculares , Mutación , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína , Subunidades de Proteína/genética , Subunidades de Proteína/metabolismo , Pseudomonas/química , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Relación Estructura-Actividad , Especificidad por Sustrato , Termodinámica
2.
J Am Chem Soc ; 142(2): 1038-1048, 2020 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-31886667

RESUMEN

Production of platform chemicals from renewable feedstocks is becoming increasingly important due to concerns on environmental contamination, climate change, and depletion of fossil fuels. Adipic acid (AA), 6-aminocaproic acid (6-ACA) and 1,6-hexamethylenediamine (HMD) are key precursors for nylon synthesis, which are currently produced primarily from petroleum-based feedstocks. In recent years, the biosynthesis of adipic acid from renewable feedstocks has been demonstrated using both bacterial and yeast cells. Here we report the biocatalytic conversion/transformation of AA to 6-ACA and HMD by carboxylic acid reductases (CARs) and transaminases (TAs), which involves two rounds (cascades) of reduction/amination reactions (AA → 6-ACA → HMD). Using purified wild type CARs and TAs supplemented with cofactor regenerating systems for ATP, NADPH, and amine donor, we established a one-pot enzyme cascade catalyzing up to 95% conversion of AA to 6-ACA. To increase the cascade activity for the transformation of 6-ACA to HMD, we determined the crystal structure of the CAR substrate-binding domain in complex with AMP and succinate and engineered three mutant CARs with enhanced activity against 6-ACA. In combination with TAs, the CAR L342E protein showed 50-75% conversion of 6-ACA to HMD. For the transformation of AA to HMD (via 6-ACA), the wild type CAR was combined with the L342E variant and two different TAs resulting in up to 30% conversion to HMD and 70% to 6-ACA. Our results highlight the suitability of CARs and TAs for several rounds of reduction/amination reactions in one-pot cascade systems and their potential for the biobased synthesis of terminal amines.


Asunto(s)
Adipatos/metabolismo , Ácido Aminocaproico/metabolismo , Biocatálisis , Diaminas/metabolismo , Oxidorreductasas/metabolismo , Transaminasas/metabolismo , Bacterias/genética , Biotransformación , Clonación Molecular , Cristalografía por Rayos X , Cinética , Oxidorreductasas/química , Conformación Proteica , Especificidad por Sustrato , Transaminasas/química
3.
Appl Microbiol Biotechnol ; 102(2): 801-814, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29188330

RESUMEN

Arthrobacter sp. strain KI72 grows on a 6-aminohexanoate oligomer, which is a by-product of nylon-6 manufacturing, as a sole source of carbon and nitrogen. We cloned the two genes, nylD 1 and nylE 1 , responsible for 6-aminohexanoate metabolism on the basis of the draft genomic DNA sequence of strain KI72. We amplified the DNA fragments that encode these genes by polymerase chain reaction using a synthetic primer DNA homologous to the 4-aminobutyrate metabolic enzymes. We inserted the amplified DNA fragments into the expression vector pColdI in Escherichia coli, purified the His-tagged enzymes to homogeneity, and performed biochemical studies. We confirmed that 6-aminohexanoate aminotransferase (NylD1) catalyzes the reaction of 6-aminohexanoate to adipate semialdehyde using α-ketoglutarate, pyruvate, and glyoxylate as amino acceptors, generating glutamate, alanine, and glycine, respectively. The reaction requires pyridoxal phosphate (PLP) as a cofactor. For further metabolism, adipate semialdehyde dehydrogenase (NylE1) catalyzes the oxidative reaction of adipate semialdehyde to adipate using NADP+ as a cofactor. Phylogenic analysis revealed that NylD1 should be placed in a branch of the PLP-dependent aminotransferase sub III, while NylE1 should be in a branch of the aldehyde dehydrogenase superfamily. In addition, we established a NylD1/NylE1 coupled system to quantify the aminotransferase activity and to enable the conversion of 6-aminohexaoate to adipate via adipate semialdehyde with a yield of > 90%. In the present study, we demonstrate that 6-aminohexanoate produced from polymeric nylon-6 and nylon oligomers (i.e., a mixture of 6-aminohexaoate oligomers) by nylon hydrolase (NylC) and 6-aminohexanoate dimer hydrolase (NylB) reactions are sequentially converted to adipate by metabolic engineering technology.


Asunto(s)
Adipatos/metabolismo , Ácido Aminocaproico/metabolismo , Arthrobacter/enzimología , Redes y Vías Metabólicas , Nylons/metabolismo , Alanina/metabolismo , Arthrobacter/genética , Proteínas Bacterianas/metabolismo , Escherichia coli , Ácido Glutámico/metabolismo , Glicina/metabolismo , Hidrolasas/metabolismo , Ingeniería Metabólica , Fosfato de Piridoxal/metabolismo , Especificidad por Sustrato , Transaminasas/metabolismo
4.
Biosci Biotechnol Biochem ; 81(12): 2407-2410, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-29017398

RESUMEN

An enzymatic method for 6-oxohexanoic acid production was developed using 6-aminohexanoic acid and an ω-amino group-oxidizing enzyme (ω-AOX) from Phialemonium sp. AIU 274. 6-Oxohexanoic acid was produced from 6-aminohexanoic acid with 100% yield by incubation with 0.3 U of the ω-AOX and 20 U of catalase at 30 °C for 30 h in 0.1 M potassium phosphate buffer (pH 7.0).


Asunto(s)
Ácido Aminocaproico/metabolismo , Ascomicetos/enzimología , Biotecnología/métodos , Caproatos/metabolismo , Biocatálisis , Catalasa/metabolismo , Concentración de Iones de Hidrógeno , Oxidación-Reducción , Temperatura
5.
Nucleic Acids Res ; 43(21): 10560-70, 2015 Dec 02.
Artículo en Inglés | MEDLINE | ID: mdl-26519464

RESUMEN

Optimizing bio-production involves strain and process improvements performed as discrete steps. However, environment impacts genotype and a strain that is optimal under one set of conditions may not be under different conditions. We present a methodology to simultaneously vary genetic and process factors, so that both can be guided by design of experiments (DOE). Advances in DNA assembly and gene insulation facilitate this approach by accelerating multi-gene pathway construction and the statistical interpretation of screening data. This is applied to a 6-aminocaproic acid (6-ACA) pathway in Escherichia coli consisting of six heterologous enzymes. A 32-member fraction factorial library is designed that simultaneously perturbs expression and media composition. This is compared to a 64-member full factorial library just varying expression (0.64 Mb of DNA assembly). Statistical analysis of the screening data from these libraries leads to different predictions as to whether the expression of enzymes needs to increase or decrease. Therefore, if genotype and media were varied separately this would lead to a suboptimal combination. This is applied to the design of a strain and media composition that increases 6-ACA from 9 to 48 mg/l in a single optimization step. This work introduces a generalizable platform to co-optimize genetic and non-genetic factors.


Asunto(s)
Algoritmos , Ácido Aminocaproico/metabolismo , Ingeniería Metabólica/métodos , Medios de Cultivo , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Redes y Vías Metabólicas/genética
6.
Perfusion ; 32(3): 226-229, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-27815558

RESUMEN

OBJECTIVE: To assess the in vitro effects of drug sequestration in extracorporeal membrane oxygenation (ECMO) on ϵ-aminocaproic acid (EACA) concentrations. METHODS AND DESIGN: This in vitro study will determine changes in EACA concentration over time in ECMO circuits. A pediatric dose of 2,500 mg was administered to whole expired blood in the simulated pediatric ECMO circuit. Blood samples were collected at 0, 30, 60, 360 and 1440-minute intervals after initial administration equilibration from three different sites of the circuit: pre-oxygenator (PRE), post-oxygenator (POST) and PVC tubing (PVC) to determine the predominant site of drug loss. The circuit was maintained for two consecutive days with a re-dose at 24 hours to establish a comparison between unsaturated (New) and saturated (Old) oxygenator membranes. Comparisons between sample sites, sample times and New versus Old membranes were statistically analyzed by a linear mixed-effects model with significance defined as a p-value <0.05. RESULTS: There were no significant differences in EACA concentration with respect to sample site, with PRE and POST samples demonstrating respective mean differences of 0.30 mg/ml and 0.34 mg/ml as compared to PVC, resulting in non-significant p-values of 0.373 [95% CI (-0.37, 0.98)] and 0.324 [95% CI (-0.34, 1.01)], respectively. The comparison of New vs. Old ECMO circuits resulted in non-significant changes from baseline, with a mean difference of 0.50 mg/ml, 95% CI (-0.65, 1.65), p=0.315. CONCLUSION: The findings of this study did not show any significant changes in drug concentration that can be attributed to sequestration within the ECMO circuit. Mean concentrations between ECMO circuit sample sites did not differ significantly. Comparison between New and Old circuits also did not differ significantly in the change from baseline concentration over time. Sequestration within ECMO circuits appears not to be a considerable factor for EACA administration.


Asunto(s)
Ácido Aminocaproico/análisis , Antifibrinolíticos/análisis , Oxigenación por Membrana Extracorpórea/instrumentación , Ácido Aminocaproico/metabolismo , Antifibrinolíticos/metabolismo , Humanos , Oxigenadores de Membrana
7.
Angew Chem Int Ed Engl ; 53(51): 14153-7, 2014 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-25366462

RESUMEN

The combination of two cofactor self-sufficient biocatalytic cascade modules allowed the successful transformation of cyclohexanol into the nylon-6 monomer 6-aminohexanoic acid at the expense of only oxygen and ammonia. A hitherto unprecedented carboxylic acid capping strategy was introduced to minimize the formation of the dead-end intermediate 6-hydroxyhexanoic acid. For this purpose, the precursor ε-caprolactone was converted in aqueous medium in the presence of methanol into the corresponding methyl ester instead of the acid. Hence, it was shown for the first time that esterases--specifically horse liver esterase--can perform the selective ring-opening of ε-caprolactone with a clear preference for methanol over water as the nucleophile.


Asunto(s)
Ácido Aminocaproico/metabolismo , Ciclohexanoles/metabolismo , Esterasas/metabolismo , Ácido Aminocaproico/química , Animales , Biocatálisis , Ciclohexanoles/química , Esterasas/química , Caballos , Hígado/enzimología , Estructura Molecular
8.
Microb Biotechnol ; 14(3): 1011-1025, 2021 05.
Artículo en Inglés | MEDLINE | ID: mdl-33369139

RESUMEN

6-Aminohexanoic acid (6AHA) is a vital polymer building block for Nylon 6 production and an FDA-approved orphan drug. However, its production from cyclohexane is associated with several challenges, including low conversion and yield, and severe environmental issues. We aimed at overcoming these challenges by developing a bioprocess for 6AHA synthesis. A mixed-species approach turned out to be most promising. Thereby, Pseudomonas taiwanensis VLB120 strains harbouring an upstream cascade converting cyclohexane to either є-caprolactone (є-CL) or 6-hydroxyhexanoic acid (6HA) were combined with Escherichia coli JM101 strains containing the corresponding downstream cascade for the further conversion to 6AHA. ε-CL was found to be a better 'shuttle molecule' than 6HA enabling higher 6AHA formation rates and yields. Mixed-species reaction performance with 4 g l-1 biomass, 10 mM cyclohexane, and an air-to-aqueous phase ratio of 23 combined with a repetitive oxygen feeding strategy led to complete substrate conversion with 86% 6AHA yield and an initial specific 6AHA formation rate of 7.7 ± 0.1 U gCDW -1 . The same cascade enabled 49% 7-aminoheptanoic acid yield from cycloheptane. This combination of rationally engineered strains allowed direct 6AHA production from cyclohexane in one pot with high conversion and yield under environmentally benign conditions.


Asunto(s)
Ácido Aminocaproico , Pseudomonas , Ácido Aminocaproico/metabolismo , Biocatálisis , Ciclohexanos , Pseudomonas/metabolismo
9.
Xenobiotica ; 40(7): 485-98, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20518623

RESUMEN

1. Zinc acexamate (ZAC) is ionized to zinc and epsilon-acetamidocaproic acid (AACA). Thus, the pharmacokinetics and tissue distribution of zinc and AACA after intravenous (50 mg kg(-1)) and oral (100 mg kg(-1)) administration of ZAC were evaluated in rats. Also the pharmacokinetics of AACA after intravenous (10, 20, 30, and 50 mg kg(-1)) and oral (20, 50, and 100 mg kg(-1)) administration of ZAC and the first-pass extractions of AACA at a ZAC dose of 20 mg kg(-1) were evaluated in rats. 2. After oral administration of ZAC (20 mg kg(-1)), approximately 0.408% of the oral dose was not absorbed, the F value was approximately 47.1%, and the hepatic and gastrointestinal (GI) first-pass extractions of AACA were approximately 8.50% and 46.4% of the oral dose, respectively. The incomplete F value of AACA was mainly due to the considerable GI first-pass extraction in rats. 3. Affinity of rat tissues to zinc and AACA was low-the tissue-to-plasma (T/P) ratios were less than unity. The equilibrium plasma-to-blood cells partition ratios of AACA were independent of initial blood ZAC concentrations of 1, 5, and 10 microg ml(-1)-the mean values were 0.481, 0.490, and 0.499, respectively. The bound fractions of zinc and AACA to rat plasma were 96.6% and 39.0%, respectively.


Asunto(s)
Aminocaproatos , Antiulcerosos/farmacocinética , Administración Oral , Ácido Aminocaproico/administración & dosificación , Ácido Aminocaproico/sangre , Ácido Aminocaproico/química , Ácido Aminocaproico/metabolismo , Ácido Aminocaproico/farmacocinética , Animales , Antiulcerosos/administración & dosificación , Antiulcerosos/metabolismo , Relación Dosis-Respuesta a Droga , Estructura Molecular , Ratas , Distribución Tisular
10.
Mol Cell Neurosci ; 42(4): 288-95, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19683575

RESUMEN

We characterized the interactions between plasminogen and neurons and investigated the associated effects on extracellular matrix proteolysis, cell morphology, adhesion, signaling and survival. Upon binding of plasminogen to neurons, the plasmin formed by constitutively expressed tissue plasminogen activator (tPA) degrades extracellular matrix proteins, leading to retraction of the neuron monolayer that detaches from the matrix. This sequence of events required both interaction of plasminogen with carboxy-terminal lysine residues and the proteolytic activity of plasmin. Surprisingly, 24h after plasminogen addition, plasmin-detached neurons survived and remained associated in clusters maintaining focal adhesion kinase phosphorylation contrasting with other adherent cell types fully dissociated by plasmin. However, long-term incubation (72 h) with plasminogen was associated with an increased rate of apoptosis, suggesting that prolonged exposure to plasmin may cause neurotoxicity. Regulation of neuronal organization and survival by plasminogen may be of pathophysiological relevance, as plasminogen is expressed in the brain and/or extravasate during vascular accidents or inflammatory processes.


Asunto(s)
Supervivencia Celular/fisiología , Neuronas/fisiología , Plasminógeno/metabolismo , Ácido Aminocaproico/metabolismo , Animales , Antifibrinolíticos/metabolismo , Células Cultivadas , Corteza Cerebral/citología , Activación Enzimática , Matriz Extracelular/metabolismo , Proteínas de la Matriz Extracelular/metabolismo , Fibrinolisina/metabolismo , Quinasa 2 de Adhesión Focal/metabolismo , Ratones , Ratones Endogámicos C57BL , Neuronas/citología , Transducción de Señal/fisiología , Activador de Tejido Plasminógeno/metabolismo
11.
Methods Mol Biol ; 2151: 185-195, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32452005

RESUMEN

An important aspect of host-pathogen interactions is the interference of secreted proteins with the fibrinolytic system. Herein, we describe a modified ELISA method used to evaluate the interaction of a recombinant Schistosoma mansoni protein with plasminogen (PLG). Using this protocol, we demonstrated that a secreted protein, recombinant venom allergen-like protein 18 (rSmVAL18) acts as a plasminogen receptor increasing its activation into plasmin in the presence of the urokinase-type plasminogen activator (uPA). PLG binding was determined by immobilizing human PLG in the plate and incubating with the recombinant protein; competitive binding with a lysine analog demonstrated the interaction of the protein lysine residues with PLG Kringle domains. To assess the activation of S. mansoni recombinant protein-bound PLG, the amidolytic activity of generated plasmin was measured using the D-Val-Leu-Lys 4-nitroanilide dihydrochloride substrate.


Asunto(s)
Ensayo de Inmunoadsorción Enzimática/métodos , Proteínas del Helminto/metabolismo , Plasminógeno/metabolismo , Schistosoma mansoni/metabolismo , Ácido Aminocaproico/metabolismo , Animales , Unión Competitiva , Fibrinolisina/metabolismo , Humanos , Unión Proteica
12.
Am J Physiol Cell Physiol ; 297(2): C471-80, 2009 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-19494241

RESUMEN

This study was designed to investigate the role of matrix metalloproteinases (MMPs) and tissue inhibitors of MMPs (TIMPs) in the reabsorption of neovessels in collagen gel cultures of rat and mouse aortic rings. Aortic angiogenesis was associated with collagen lysis and production of the matrix-degrading enzymes MMP-2, MMP-9, and membrane-type MMP (MT1-MMP, or MMP-14). Vascular growth and regression were not affected by disruption of MMP-2 or MMP-9. In addition, no effect on vascular regression was observed by blocking plasmin, a protease implicated in the activation of MMPs, with epsilon-aminocaproic acid or by adding plasminogen, which caused a modest increase in vascular proliferation. Conversely, angiogenesis was blocked and vessels stabilized by inhibiting MT1-MMP with neutralizing antibodies, TIMP-2, TIMP-3, or TIMP-4. TIMP-1, which blocks MMP-2 and MMP-9 but is a poor inhibitor of MT1-MMP, had no antiangiogenic effect. However, TIMP-1 prolonged the survival of neovessels following angiogenesis. Vascular regression was accelerated in aortic cultures from TIMP-1- and TIMP-2-deficient mice. The vascular survival effect of anti-MT1-MMP antibodies and TIMPs with MT1-MMP inhibitory activity was associated with complete inhibition of collagen lysis. In contrast, TIMP-1 had no anticollagenolytic effect. These results indicate that MT1-MMP plays a critical role not only in angiogenesis but also in vascular regression and demonstrate that TIMPs with anti-MT1-MMP activity have opposite effects on angiogenic outcomes depending on the stage of the angiogenic process. This study also suggests the existence of a TIMP-1-mediated alternate pathway of vascular survival that is unrelated to MT1-MMP inhibitory activity.


Asunto(s)
Aorta , Metaloproteinasa 14 de la Matriz/metabolismo , Neovascularización Fisiológica , Isoformas de Proteínas/metabolismo , Inhibidores Tisulares de Metaloproteinasas/metabolismo , Ácido Aminocaproico/metabolismo , Animales , Antifibrinolíticos/metabolismo , Aorta/anatomía & histología , Aorta/metabolismo , Fibrinolisina/metabolismo , Humanos , Metaloproteinasa 2 de la Matriz/genética , Metaloproteinasa 2 de la Matriz/metabolismo , Metaloproteinasa 9 de la Matriz/genética , Metaloproteinasa 9 de la Matriz/metabolismo , Ratones , Plasminógeno/metabolismo , Isoformas de Proteínas/genética , Ratas , Técnicas de Cultivo de Tejidos , Inhibidores Tisulares de Metaloproteinasas/genética
13.
Science ; 248(4951): 69-73, 1990 Apr 06.
Artículo en Inglés | MEDLINE | ID: mdl-2108500

RESUMEN

Native human plasminogen has a radius of gyration of 39 angstroms. Upon occupation of a weak lysine binding site, the radius of gyration increases to 56 angstroms, an extremely large ligand-induced conformational change. There are no intermediate conformational states between the closed and open form. The conformational chang is not accompanied by a change in secondary structure, hence the closed conformation is formed by interaction between domains that is abolished upon conversion to the open form. This reversible change in conformation, in which the shape of the protein changes from that best described by a prolate ellipsoid to a flexible structure best described by a Debye random coil, is physiologically relevant because a weak lysine binding site regulates the activation of plasminogen.


Asunto(s)
Plasminógeno , Ácido Aminocaproico/metabolismo , Ácido Aminocaproico/farmacología , Sitios de Unión , Fenómenos Químicos , Química Física , Dicroismo Circular , Deuterio , Humanos , Lisina/metabolismo , Neutrones , Plasminógeno/metabolismo , Activadores Plasminogénicos/farmacología , Conformación Proteica/efectos de los fármacos , Dispersión de Radiación , Activador de Plasminógeno de Tipo Uroquinasa/farmacología , Agua
14.
FEBS J ; 286(20): 4086-4102, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31162815

RESUMEN

The biodegradation of the nylon-6 precursor caprolactam by a strain of Pseudomonas jessenii proceeds via ATP-dependent hydrolytic ring opening to 6-aminohexanoate. This non-natural ω-amino acid is converted to 6-oxohexanoic acid by an aminotransferase (PjAT) belonging to the fold type I pyridoxal 5'-phosphate (PLP) enzymes. To understand the structural basis of 6-aminohexanoatate conversion, we solved different crystal structures and determined the substrate scope with a range of aliphatic and aromatic amines. Comparison with the homologous aminotransferases from Chromobacterium violaceum (CvAT) and Vibrio fluvialis (VfAT) showed that the PjAT enzyme has the lowest KM values (highest affinity) and highest specificity constant (kcat /KM ) with the caprolactam degradation intermediates 6-aminohexanoate and 6-oxohexanoic acid, in accordance with its proposed in vivo function. Five distinct three-dimensional structures of PjAT were solved by protein crystallography. The structure of the aldimine intermediate formed from 6-aminohexanoate and the PLP cofactor revealed the presence of a narrow hydrophobic substrate-binding tunnel leading to the cofactor and covered by a flexible arginine, which explains the high activity and selectivity of the PjAT with 6-aminohexanoate. The results suggest that the degradation pathway for caprolactam has recruited an aminotransferase that is well adapted to 6-aminohexanoate degradation. DATABASE: The atomic coordinates and structure factors P. jessenii 6-aminohexanoate aminotransferase have been deposited in the PDB as entries 6G4B (E∙succinate complex), 6G4C (E∙phosphate complex), 6G4D (E∙PLP complex), 6G4E (E∙PLP-6-aminohexanoate intermediate), and 6G4F (E∙PMP complex).


Asunto(s)
Ácido Aminocaproico/metabolismo , Proteínas Bacterianas/metabolismo , Caprolactama/metabolismo , Pseudomonas/enzimología , Fosfato de Piridoxal/metabolismo , Transaminasas/química , Transaminasas/metabolismo , Secuencia de Aminoácidos , Ácido Aminocaproico/química , Proteínas Bacterianas/química , Caprolactama/química , Cristalografía por Rayos X , Modelos Moleculares , Filogenia , Homología de Secuencia , Especificidad por Sustrato
15.
J Mol Biol ; 370(1): 142-56, 2007 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-17512009

RESUMEN

We performed X-ray crystallographic analyses of 6-aminohexanoate-dimer hydrolase (Hyb-24DN), an enzyme responsible for the degradation of nylon-6, an industry by-product, and of a complex between Hyb-24DN-A(112) (S112A-mutant of Hyb-24DN) and 6-aminohexanoate-linear dimer (Ald) at 1.58 A and 1.4 A resolution, respectively. In Hyb-24DN, Asp181-O(delta) forms hydrogen bonds with Tyr170-O(eta), -two of the catalytic and binding amino acids, and a loop between Asn167 and Val177. This state is the so-called open form, allowing its substrate to bind in the space between the loop and catalytic residues. Upon substrate binding (in Hyb-24DN-A(112)/Ald complex), the loop is shifted 4.3 A at Tyr170-C(alpha), and the side-chain of Tyr170 is rotated. By the combined effect, Tyr170-O(eta) moves a total of 10.5 A, resulting in the formation of hydrogen bonds with the nitrogen of amide linkage in Ald (closed form). In addition, electrostatic interaction between Asp181-O(delta) and the amino group in Ald stabilizes the substrate binding. We propose here that the enzyme catalysis proceeds according to the following steps: (i) Ald-induced transition from open to closed form, (ii) nucleophilic attack of Ser112 to Ald and formation of a tetrahedral intermediate, (iii) formation of acyl enzyme and transition to open form, (iv) deacylation. Amino acid substitutions reducing the enzyme/Ald interaction at positions 181 or 170 drastically decreased the Ald-hydrolytic activity, but had very little effect on esterolytic activity, suggesting that esterolytic reaction proceeds regardless of conversion. Present models illustrate why new activity against the nylon oligomer has evolved in an esterase with beta-lactamase folds, while retaining the original esterolytic functions.


Asunto(s)
Amidohidrolasas , Ácido Aminocaproico/metabolismo , Nylons , Estructura Terciaria de Proteína , Amidohidrolasas/química , Amidohidrolasas/genética , Amidohidrolasas/metabolismo , Ácido Aminocaproico/química , Antifibrinolíticos/química , Antifibrinolíticos/metabolismo , Catálisis , Dominio Catalítico , Cristalografía por Rayos X , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Molecular , Nylons/química , Nylons/metabolismo , Relación Estructura-Actividad , Agua/química , beta-Lactamasas/química , beta-Lactamasas/metabolismo
16.
Thromb Res ; 122(2): 145-52, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-17935760

RESUMEN

Cell based models of coagulation (CBM) have provided mechanistic insight into numerous hematological issues for nearly two decades. This review discusses another coagulation model system--the clot lifespan model (CLSM)--that has been designed to compliment the CBM-based approach to elucidating the mechanisms responsible for a variety of hemostatic disorders/phenomena. The CLSM is a thrombelastograph-based approach that utilizes a standardized clotting stimulus (e.g., celite, tissue factor) and a fibrinolytic stimulus (e.g., tissue type plasminogen activator) to assess clot growth and disintegration via changes in clot resistance. The CLSM utilizes parametric, elastic modulus-based parameters to document these phenomena. The CLSM has recently been employed to discern the effects of protamine and hydroxyethyl starch on key fibrinolytic-antifibrinolytic protein interactions, as well as demonstrating differences in fibrinolytic kinetics dependent on whether contact pathway proteins or tissue factor is used to initiate coagulation. The CLSM is presently being utilized to investigate the effects of ventricular assist device placement on fibrinolysis, and it is anticipated that this model system will be employed in both basic science and clinical investigations in the future.


Asunto(s)
Coagulación Sanguínea , Ácido Aminocaproico/metabolismo , Animales , Proteínas Sanguíneas/química , Catálisis , Fibrinólisis , Hemostasis , Humanos , Cinética , Protaminas/metabolismo , Activador de Tejido Plasminógeno/metabolismo
17.
Nat Neurosci ; 5(9): 843-8, 2002 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-12161754

RESUMEN

Growing axons navigate by responding to chemical guidance cues. Here we report that growth cones of rat cerebellar axons in culture turned away from a gradient of SDF-1, a chemokine that attracts migrating leukocytes and cerebellar granule cells via a G protein-coupled receptor (GPCR). Similarly, Xenopus spinal growth cones turned away from a gradient of baclofen, an agonist of the GABA(B) receptor. This response was mediated by G(i) and subsequent activation of phospholipase C (PLC), which triggered two pathways: protein kinase C (PKC) led to repulsion, and inositol 1,4,5-triphosphate (IP(3)) receptor activation led to attractive turning. Under normal culture conditions, PKC-dependent repulsion dominated, but the repulsion could be converted to attraction by inhibiting PKC or by elevating cytosolic cGMP. Thus, GPCRs can mediate both repulsive and attractive axon guidance in vitro, and chemokines may serve as guidance cues for axon pathfinding.


Asunto(s)
Comunicación Celular/fisiología , Diferenciación Celular/fisiología , Sistema Nervioso Central/embriología , Quimiocinas/metabolismo , Proteínas de Unión al GTP/metabolismo , Conos de Crecimiento/metabolismo , Receptores de Superficie Celular/metabolismo , Ácido Aminocaproico/antagonistas & inhibidores , Ácido Aminocaproico/metabolismo , Animales , Baclofeno/farmacología , Señalización del Calcio/efectos de los fármacos , Señalización del Calcio/fisiología , Células Cultivadas , Sistema Nervioso Central/citología , Sistema Nervioso Central/metabolismo , Corteza Cerebelosa/citología , Corteza Cerebelosa/embriología , Corteza Cerebelosa/metabolismo , Quimiocina CXCL12 , Quimiocinas CXC/metabolismo , Quimiocinas CXC/farmacología , Quimiotaxis/efectos de los fármacos , Quimiotaxis/fisiología , GMP Cíclico/metabolismo , Agonistas del GABA/farmacología , Agonistas de Receptores GABA-B , Antagonistas de Receptores de GABA-B , Conos de Crecimiento/ultraestructura , Inositol 1,4,5-Trifosfato/metabolismo , Proteína Quinasa C/metabolismo , Ratas , Ratas Sprague-Dawley , Receptores de GABA-B/metabolismo , Transducción de Señal/fisiología , Fosfolipasas de Tipo C/metabolismo , Xenopus laevis
18.
ACS Synth Biol ; 6(5): 884-890, 2017 05 19.
Artículo en Inglés | MEDLINE | ID: mdl-28414905

RESUMEN

ε-Caprolactam and δ-valerolactam are important commodity chemicals used in the manufacture of nylons, with millions of tons produced annually. Biological production of these highly valued chemicals has been limited due to a lack of enzymes that cyclize ω-amino fatty acid precursors to corresponding lactams under ambient conditions. In this study, we demonstrated production of these chemicals using ORF26, an acyl-CoA ligase involved in the biosynthesis of ECO-02301 in Streptomyces aizunensis. This enzyme has a broad substrate spectrum and can cyclize 4-aminobutyric acid into γ-butyrolactam, 5-aminovaleric acid into δ-valerolactam and 6-aminocaproic acid into ε-caprolactam. Recombinant E. coli expressing ORF26 produced valerolactam and caprolactam when 5-aminovaleric acid and 6-aminocaproic acid were added to the culture medium. Upon coexpressing ORF26 with a metabolic pathway that produced 5-aminovaleric acid from lysine, we were able to demonstrate production of δ-valerolactam from lysine.


Asunto(s)
Coenzima A Ligasas/metabolismo , Lactamas/metabolismo , Streptomyces/enzimología , Aminoácidos Neutros/metabolismo , Ácido Aminocaproico/metabolismo , Proteínas Bacterianas/metabolismo , Lisina/metabolismo , Sistemas de Lectura Abierta/genética , Ácido gamma-Aminobutírico/metabolismo
19.
Pathog Dis ; 75(3)2017 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-28204467

RESUMEN

Mycoplasma pneumoniae is a common cause of community-acquired infections of the human respiratory tract. The strongly reduced genome of the cell wall-less bacteria results in limited metabolic pathways and a small number of known virulence factors. In addition to the well-characterized adhesion apparatus and the expression of tissue-damaging substances, surface-exposed proteins with a primary function in cytosol-located processes such as glycolysis have been attracting attention in recent years. Due to interactions with host factors, it has been suggested that these bacterial proteins contribute to pathogenesis. Here, we investigated the chaperones GroEL and DnaK of M. pneumoniae as candidates for such moonlighting proteins. After successful expression in Escherichia coli and production of polyclonal antisera, the localization of both chaperones on the surface of bacteria was confirmed. Binding of recombinant GroEL and DnaK to human A549 cells, to plasminogen as well as to vitronectin, fibronectin, fibrinogen, lactoferrin and laminin was demonstrated. In the presence of both recombinant proteins and host activators, plasminogen can be activated to the protease plasmin, which is able to degrade vitronectin and fibrinogen. The results of the study extend the spectrum of surface-exposed proteins in M. pneumoniae and indicate an additional role of both chaperones in infection processes.


Asunto(s)
Adenosina Trifosfatasas/metabolismo , Proteínas Bacterianas/metabolismo , Chaperonina 60/metabolismo , Matriz Extracelular/metabolismo , Mycoplasma pneumoniae/metabolismo , Plasminógeno/metabolismo , Células A549 , Adenosina Trifosfatasas/genética , Ácido Aminocaproico/metabolismo , Proteínas Bacterianas/genética , Membrana Celular/metabolismo , Técnicas de Visualización de Superficie Celular , Chaperonina 60/genética , Proteínas de la Matriz Extracelular/metabolismo , Humanos , Sueros Inmunes/inmunología , Mycoplasma pneumoniae/genética , Mycoplasma pneumoniae/inmunología , Neumonía por Mycoplasma/metabolismo , Neumonía por Mycoplasma/microbiología , Unión Proteica , Transporte de Proteínas , Proteínas Recombinantes/metabolismo
20.
J Natl Cancer Inst ; 57(1): 181-5, 1976 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-1003500

RESUMEN

The metabolism of [2-14C]N-nitrosohexamethyleneimine in male MRC-Wistar rats was studied and some of the major urinary metabolites were identified. The extent of total oxidation to 14CO2 was 18.1% in 24 hours and radioactivity incorporation was observed in various tissues; that in the liver was the highest. Analysis of urine after 24 hours showed that 36.7% of the radioactivity administered was excreted by this route, with a minimum of 11 products present. Hexamethyleneimine (HX), epsilon-caprolactam, epsilon-aminocaproic acid, and 6-aminocaprohydroxamic acid were the identified metabolites. Of the remaining products, two appeared to result from HX metabolism and one was a glucuronide conjugate. No parent compound was found.


Asunto(s)
Nitrosaminas/metabolismo , Ácido Aminocaproico/metabolismo , Animales , Azepinas/metabolismo , Azepinas/orina , Caproatos/metabolismo , Caprolactama/metabolismo , Dióxido de Carbono/metabolismo , Fenómenos Químicos , Química , Hidroxilación , Hígado/metabolismo , Masculino , Nitrosaminas/orina , Ratas
SELECCIÓN DE REFERENCIAS
Detalles de la búsqueda