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1.
World J Microbiol Biotechnol ; 38(11): 199, 2022 Aug 23.
Artículo en Inglés | MEDLINE | ID: mdl-35996038

RESUMEN

As an important glycosaminoglycan hydrolase, chondroitin lyases can hydrolyze chondroitin sulfate (CS) and release disaccharides and oligosaccharides. They are further divided into chondroitin AC, ABC, and B lyases according to their spatial structure and substrate specificity. Chondroitin AC lyase can hydrolyze chondroitin sulfate A (CS-A), chondroitin sulfate C (CS-C), and hyaluronic acid (HA), making it an essential biocatalyst for the preparation of low molecular weight chondroitin sulfate, analysis of the structure of the chondroitin sulfate, treatment of spinal cord injury, and purification of heparin. This paper provides an overview of reported chondroitin AC lyases, including their properties and the challenges faced in industrial applications. Up to now, although many attempts have been adopted to improve the enzyme properties, the most important factors are still the low activity and stability. The relations between the stability of the enzyme and the spatial structure were also summarized and discussed. Also perspectives for remodeling the enzymes with protein engineering are included.


Asunto(s)
Sulfatos de Condroitina , Liasas , Condroitín Liasas/química , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/química , Sulfatos de Condroitina/metabolismo , Ácido Hialurónico/química , Ácido Hialurónico/metabolismo , Liasas/metabolismo , Especificidad por Sustrato
2.
J Biol Chem ; 293(12): 4230-4243, 2018 03 23.
Artículo en Inglés | MEDLINE | ID: mdl-29414785

RESUMEN

GlcUAß1-3GalNAc(4S,6S) (E unit)-rich domains have been shown to play key roles in various biological functions of chondroitin sulfate (CS). However, an enzyme that can specifically isolate such domains through the selective digestion of other domains in polysaccharides has not yet been reported. Here, we identified a glycosaminoglycan lyase from a marine bacterium Vibrio sp. FC509. This enzyme efficiently degraded hyaluronic acid (HA) and CS variants, but not E unit-rich CS-E, into unsaturated disaccharides; therefore, we designated this enzyme a CS-E-resisted HA/CS lyase (HCLase Er). We isolated a series of resistant oligosaccharides from the final product of a low-sulfated CS-E exhaustively digested by HCLase Er and found that the E units were dramatically accumulate in these resistant oligosaccharides. By determining the structures of several resistant tetrasaccharides, we observed that all of them possessed a Δ4,5HexUAα1-3GalNAc(4S,6S) at their non-reducing ends, indicating that the disulfation of GalNAc abrogates HCLase Er activity on the ß1-4 linkage between the E unit and the following disaccharide. Δ4,5HexUAα1-3GalNAc(4S,6S)ß1-4GlcUAß1-3GalNAc(4S,6S) was most strongly resistant to HCLase Er. To our knowledge, this study is the first reporting a glycosaminoglycan lyase specifically inhibited by both 4-O- and 6-O-sulfation of GalNAc. Site-directed and truncation mutagenesis experiments indicated that HCLase Er may use a general acid-base catalysis mechanism and that an extra domain (Gly739-Gln796) is critical for its activity. This enzyme will be a useful tool for structural analyses and for preparing bioactive oligosaccharides of HA and CS variants, particularly from E unit-rich CS chains.


Asunto(s)
Acetilgalactosamina/metabolismo , Proteínas Bacterianas/metabolismo , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/metabolismo , Glucuronatos/metabolismo , Ácido Hialurónico/metabolismo , Vibrio/enzimología , Secuencia de Aminoácidos , Animales , Homología de Secuencia
3.
Mar Drugs ; 17(3)2019 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-30897810

RESUMEN

Chondroitinase (ChSase), a type of glycosaminoglycan (GAG) lyase, can degrade chondroitin sulfate (CS) to unsaturate oligosaccharides, with various functional activities. In this study, ChSase AC II from a newly isolated marine bacterium Arthrobacter sp. CS01 was cloned, expressed in Pichia pastoris X33, purified, and characterized. ChSase AC II, with a molecular weight of approximately 100 kDa and a specific activity of 18.7 U/mg, showed the highest activity at 37 °C and pH 6.5 and maintained stability at a broad range of pH (5⁻7.5) and temperature (below 35 °C). The enzyme activity was increased in the presence of Mn2+ and was strongly inhibited by Hg2+. Moreover, the kinetic parameters of ChSase AC II against CS-A, CS-C, and HA were determined. TLC and ESI-MS analysis of the degradation products indicated that ChSase AC II displayed an exolytic action mode and completely hydrolyzed three substrates into oligosaccharides with low degrees of polymerization (DPs). All these features make ChSase AC II a promising candidate for the full use of GAG to produce oligosaccharides.


Asunto(s)
Organismos Acuáticos/química , Arthrobacter/química , Proteínas Bacterianas/metabolismo , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Condroitín Liasas/química , Condroitín Liasas/aislamiento & purificación , Pruebas de Enzimas , Concentración de Iones de Hidrógeno , Hidrólisis , Cinética , Oligosacáridos/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Temperatura
4.
J Biol Chem ; 291(9): 4399-406, 2016 Feb 26.
Artículo en Inglés | MEDLINE | ID: mdl-26742844

RESUMEN

Glycosaminoglycans (GAGs) are polysaccharides that play vital functional roles in numerous biological processes, and compounds belonging to this class have been implicated in a wide variety of diseases. Chondroitin AC lyase (ChnAC) (EC 4.2.2.5) catalyzes the degradation of various GAGs, including chondroitin sulfate and hyaluronic acid, to give the corresponding disaccharides containing an Δ(4)-unsaturated uronic acid at their non-reducing terminus. ChnAC has been isolated from various bacteria and utilized as an enzymatic tool for study and evaluating the sequencing of GAGs. Despite its substrate specificity and the fact that its crystal structure has been determined to a high resolution, the direction in which ChnAC catalyzes the cleavage of oligosaccharides remain unclear. Herein, we have determined the structural cues of substrate depolymerization and the cleavage direction of ChnAC using model substrates and recombinant ChnAC protein. Several structurally defined oligosaccharides were synthesized using a chemoenzymatic approach and subsequently cleaved using ChnAC. The degradation products resulting from this process were determined by mass spectrometry. The results revealed that ChnAC cleaved the ß1,4-glycosidic linkages between glucuronic acid and glucosamine units when these bonds were located on the reducing end of the oligosaccharide. In contrast, the presence of a GlcNAc-α-1,4-GlcA unit at the reducing end of the oligosaccharide prevented ChnAC from cleaving the GalNAc-ß1,4-GlcA moiety located in the middle or at the non-reducing end of the chain. These interesting results therefore provide direct proof that ChnAC cleaves oligosaccharide substrates from their reducing end toward their non-reducing end. This conclusion will therefore enhance our collective understanding of the mode of action of ChnAC.


Asunto(s)
Arthrobacter/enzimología , Proteínas Bacterianas/metabolismo , Condroitín Liasas/metabolismo , Oligosacáridos/metabolismo , Resinas de Intercambio Aniónico , Proteínas Bacterianas/genética , Biocatálisis , Secuencia de Carbohidratos , Condroitín Liasas/genética , Cromatografía Líquida de Alta Presión , Hidrólisis , Oligosacáridos/química , Proteínas Recombinantes/metabolismo , Espectrometría de Masa por Ionización de Electrospray , Especificidad por Sustrato
5.
Glycobiology ; 26(6): 592-606, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-26791444

RESUMEN

Chondroitin sulfate (CS) is a linear acidic polysaccharide composed of repeating disaccharide units of glucuronic acid and N-acetyl-d-galactosamine. The polysaccharide is modified with sulfate groups at different positions by a variety of sulfotransferases. CS chains exhibit various biological and pathological functions by interacting with cytokines and growth factors and regulating their signal transduction. The fine structure of the CS chain defines its specific biological roles. However, structural analysis of CS has been restricted to disaccharide analysis, hampering the understanding of the structure-function relationship of CS chains. Here, we chemo-enzymatically synthesized CS dodecasaccharides having various sulfate modifications using a bioreactor system of bacterial chondroitin polymerase mutants and various CS sulfotransferases. We developed a sequencing method for CS chains using the CS dodecasaccharides. The method consists of (i) labeling a reducing end with 2-aminopyridine (PA), (ii) partial digestion of CS with testicular hyaluronidase, followed by separation of PA-conjugated oligosaccharides with different chain lengths, (iii) limited digestion of these oligosaccharides with chondroitin lyase AC II into disaccharides, followed by labeling with 2-aminobenzamide, (iv) CS disaccharide analysis using a dual-fluorescence HPLC system (reversed-phase ion-pair and ion-exchange chromatography), and (v) estimation of the composition by calculating individual disaccharide ratios. This CS chain sequencing allows characterization of CS-modifying enzymes and provides a useful tool toward understanding the structure-function relationship of CS chains.


Asunto(s)
Proteínas Bacterianas/química , Sulfatos de Condroitina/análisis , Disacáridos/análisis , Escherichia coli/enzimología , Oligosacáridos/análisis , Acetilgalactosamina/química , Acetilgalactosamina/metabolismo , Aminopiridinas/química , Proteínas Bacterianas/metabolismo , Reactores Biológicos , Secuencia de Carbohidratos , Condroitín Liasas/química , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/biosíntesis , Sulfatos de Condroitina/síntesis química , Cromatografía Líquida de Alta Presión , Cromatografía por Intercambio Iónico , Disacáridos/química , Escherichia coli/genética , Ácido Glucurónico/química , Ácido Glucurónico/metabolismo , Hexosiltransferasas/química , Hexosiltransferasas/metabolismo , Hialuronoglucosaminidasa/química , Hialuronoglucosaminidasa/metabolismo , Oligosacáridos/biosíntesis , Oligosacáridos/síntesis química , Análisis de Secuencia , Coloración y Etiquetado/métodos , Sulfotransferasas/química , Sulfotransferasas/metabolismo , ortoaminobenzoatos/química
6.
Microb Ecol ; 72(4): 955-964, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-27193154

RESUMEN

Environmentally transmitted opportunistic pathogens shuttle between two substantially different environments: outside-host and within-host habitats. These environments differ from each other especially with respect to nutrient availability. Consequently, the pathogens are required to regulate their behavior in response to environmental cues in order to survive, but how nutrients control the virulence in opportunistic pathogens is still poorly understood. In this study, we examined how nutrient level in the outside-host environment affects the gene expression of putative virulence factors of the opportunistic fish pathogen Flavobacterium columnare. The impact of environmental nutrient concentration on bacterial virulence was explored by cultivating the bacteria in various nutrient conditions, measuring the gene expression of putative virulence factors with RT-qPCR and, finally, experimentally challenging rainbow trout (Oncorhynchus mykiss) fry with these bacteria. Our results show that increased environmental nutrient concentration can increase the expression of putative virulence genes, chondroitinase (cslA) and collagenase, in the outside-host environment and may lead to more rapid fish mortality. These findings address that the environmental nutrients may act as significant triggers of virulence gene expression and therefore contribute to the interaction between an environmentally transmitted opportunistic pathogen and its host.


Asunto(s)
Condroitín Liasas/metabolismo , Colagenasas/metabolismo , Enfermedades de los Peces/microbiología , Flavobacterium/patogenicidad , Oncorhynchus mykiss/microbiología , Factores de Virulencia/metabolismo , Animales , Condroitín Liasas/genética , Colagenasas/genética , Exposición a Riesgos Ambientales , Alimentos , Reacción en Cadena en Tiempo Real de la Polimerasa , Microbiología del Agua
7.
J Biol Chem ; 289(40): 27886-98, 2014 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-25122756

RESUMEN

Lyases cleave glycosaminoglycans (GAGs) in an eliminative mechanism and are important tools for the structural analysis and oligosaccharide preparation of GAGs. Various GAG lyases have been identified from terrestrial but not marine organisms even though marine animals are rich in GAGs with unique structures and functions. Herein we isolated a novel GAG lyase for the first time from the marine bacterium Vibrio sp. FC509 and then recombinantly expressed and characterized it. It showed strong lyase activity toward hyaluronan (HA) and chondroitin sulfate (CS) and was designated as HA and CS lyase (HCLase). It exhibited the highest activities to both substrates at pH 8.0 and 0.5 m NaCl at 30 °C. Its activity toward HA was less sensitive to pH than its CS lyase activity. As with most other marine enzymes, HCLase is a halophilic enzyme and very stable at temperatures from 0 to 40 °C for up to 24 h, but its activity is independent of divalent metal ions. The specific activity of HCLase against HA and CS reached a markedly high level of hundreds of thousands units/mg of protein under optimum conditions. The HCLase-resistant tetrasaccharide Δ(4,5)HexUAα1-3GalNAc(6-O-sulfate)ß1-4GlcUA(2-O-sulfate)ß1-3GalNAc(6-O-sulfate) was isolated from CS-D, the structure of which indicated that HCLase could not cleave the galactosaminidic linkage bound to 2-O-sulfated d-glucuronic acid (GlcUA) in CS chains. Site-directed mutagenesis indicated that HCLase may work via a catalytic mechanism in which Tyr-His acts as the Brønsted base and acid. Thus, the identification of HCLase provides a useful tool for HA- and CS-related research and applications.


Asunto(s)
Proteínas Bacterianas/metabolismo , Condroitín Liasas/metabolismo , Condroitín/metabolismo , Ácido Hialurónico/metabolismo , Agua de Mar/microbiología , Vibrio/enzimología , Vibrio/aislamiento & purificación , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Condroitín/química , Condroitín Liasas/química , Condroitín Liasas/genética , Estabilidad de Enzimas , Ácido Hialurónico/química , Datos de Secuencia Molecular , Filogenia , Especificidad por Sustrato , Vibrio/química , Vibrio/genética
8.
Appl Environ Microbiol ; 81(21): 7394-402, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26253667

RESUMEN

Flavobacterium columnare is an important bacterial pathogen of freshwater fish that causes high mortality of infected fish and heavy economic losses in aquaculture. The pathogenesis of this bacterium is poorly understood, in part due to the lack of efficient methods for genetic manipulation. In this study, a gene deletion strategy was developed and used to determine the relationship between the production of chondroitin lyases and virulence. The F. johnsoniae ompA promoter (PompA) was fused to sacB to construct a counterselectable marker for F. columnare. F. columnare carrying PompA-sacB failed to grow on media containing 10% sucrose. A suicide vector carrying PompA-sacB was constructed, and a gene deletion strategy was developed. Using this approach, the chondroitin lyase-encoding genes, cslA and cslB, were deleted. The ΔcslA and ΔcslB mutants were both partially deficient in digestion of chondroitin sulfate A, whereas a double mutant (ΔcslA ΔcslB) was completely deficient in chondroitin lyase activity. Cells of F. columnare wild-type strain G4 and of the chondroitin lyase-deficient ΔcslA ΔcslB mutant exhibited similar levels of virulence toward grass carp in single-strain infections. Coinfections, however, revealed a competitive advantage for the wild type over the chondroitin lyase mutant. The results indicate that chondroitin lyases are not essential virulence factors of F. columnare but may contribute to the ability of the pathogen to compete and cause disease in natural infections. The gene deletion method developed in this study may be employed to investigate the virulence factors of this bacterium and may have wide application in many other members of the phylum Bacteroidetes.


Asunto(s)
Condroitín Liasas/metabolismo , Infecciones por Flavobacteriaceae/veterinaria , Flavobacterium/enzimología , Flavobacterium/fisiología , Eliminación de Gen , Factores de Virulencia/metabolismo , Animales , Carpas , Condroitín Liasas/deficiencia , Condroitín Liasas/genética , Sulfatos de Condroitina/metabolismo , ADN Bacteriano/química , ADN Bacteriano/genética , Infecciones por Flavobacteriaceae/microbiología , Infecciones por Flavobacteriaceae/patología , Flavobacterium/genética , Datos de Secuencia Molecular , Análisis de Secuencia de ADN , Virulencia , Factores de Virulencia/deficiencia , Factores de Virulencia/genética
9.
Int J Biol Macromol ; 255: 127959, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-37951443

RESUMEN

Chondroitin sulfate is a biologically and commercially important polysaccharide with a variety of applications. Carbohydrate-binding module (CBM) is an important class of carbohydrate-binding protein, which could be utilized as a promising tool for the applications of polysaccharides. In the present study, an unknown function domain was explored from a putative chondroitin sulfate lyase in PL29 family. Recombinant PhCBM100 demonstrated binding capacity to chondroitin sulfates with Ka values of 2.1 ± 0.2 × 106 M-1 and 6.0 ± 0.1 × 106 M-1 to chondroitin sulfate A and chondroitin sulfate C, respectively. The 1.55 Å resolution X-ray crystal structure of PhCBM100 exhibited a ß-sandwich fold formed by two antiparallel ß-sheets. A binding groove in PhCBM100 interacting with chondroitin sulfate was subsequently identified, and the potential of PhCBM100 for visualization of chondroitin sulfate was evaluated. PhCBM100 is the first characterized chondroitin sulfate-specific CBM. The novelty of PhCBM100 proposed a new CBM family of CBM100.


Asunto(s)
Sulfatos de Condroitina , Polisacáridos , Sulfatos de Condroitina/química , Condroitín Liasas/metabolismo
10.
J Agric Food Chem ; 72(23): 13196-13204, 2024 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-38805590

RESUMEN

Chondroitin sulfate (CS) is the predominant glycosaminoglycan within the human body and is widely applied in various industries. Carbohydrate-binding modules (CBMs) possessing the capacity for carbohydrate recognition are verified to be important tools for polysaccharide investigation. Only one CS-specific CBM, PhCBM100, has hitherto been characterized. In the present study, two CBM96 domains present in the same putative PL8_3 chondroitin AC lyase were discovered and recombinantly expressed. The results of microtiter plate assays and affinity gel electrophoresis assays showed that the two corresponding proteins, DmCBM96-1 and DmCBM96-2, bind specifically to CSs. The crystal structure of DmCBM96-1 was determined at a 2.20 Å resolution. It adopts a ß-sandwich fold comprising two antiparallel ß-sheets, showing structural similarities to TM6-N4, which is the founding member of the CBM96 family. Site mutagenesis analysis revealed that the residues of Arg27, Lys45, Tyr51, Arg53, and Arg157 are critical for CS binding. The characterization of the two CBM96 proteins demonstrates the diverse ligand specificity of the CBM96 family and provides promising tools for CS investigation.


Asunto(s)
Sulfatos de Condroitina , Unión Proteica , Sulfatos de Condroitina/química , Sulfatos de Condroitina/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Secuencia de Aminoácidos , Alineación de Secuencia , Condroitín Liasas/química , Condroitín Liasas/metabolismo , Condroitín Liasas/genética
11.
J Struct Biol ; 181(3): 264-73, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23270863

RESUMEN

The nanostructure and nanomechanical properties of aggrecan monomers extracted and purified from human articular cartilage from donors of different ages (newborn, 29 and 38 year old) were directly visualized and quantified via atomic force microscopy (AFM)-based imaging and force spectroscopy. AFM imaging enabled direct comparison of full length monomers at different ages. The higher proportion of aggrecan fragments observed in adult versus newborn populations is consistent with the cumulative proteolysis of aggrecan known to occur in vivo. The decreased dimensions of adult full length aggrecan (including core protein and glycosaminoglycan (GAG) chain trace length, end-to-end distance and extension ratio) reflect altered aggrecan biosynthesis. The demonstrably shorter GAG chains observed in adult full length aggrecan monomers, compared to newborn monomers, also reflects markedly altered biosynthesis with age. Direct visualization of aggrecan subjected to chondroitinase and/or keratanase treatment revealed conformational properties of aggrecan monomers associated with chondroitin sulfate (CS) and keratan sulfate (KS) GAG chains. Furthermore, compressive stiffness of chemically end-attached layers of adult and newborn aggrecan was measured in various ionic strength aqueous solutions. Adult aggrecan was significantly weaker in compression than newborn aggrecan even at the same total GAG density and bath ionic strength, suggesting the importance of both electrostatic and non-electrostatic interactions in nanomechanical stiffness. These results provide molecular-level evidence of the effects of age on the conformational and nanomechanical properties of aggrecan, with direct implications for the effects of aggrecan nanostructure on the age-dependence of cartilage tissue biomechanical and osmotic properties.


Asunto(s)
Agrecanos/metabolismo , Envejecimiento/fisiología , Cartílago/metabolismo , Glicosaminoglicanos/metabolismo , Adulto , Agrecanos/ultraestructura , Condroitín Liasas/metabolismo , Glicosaminoglicanos/ultraestructura , Glicósido Hidrolasas/metabolismo , Humanos , Técnicas In Vitro , Recién Nacido , Microscopía de Fuerza Atómica
12.
Glycobiology ; 22(6): 826-38, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-22345629

RESUMEN

Interactions between proteins and glycosaminoglycans (GAGs) of the extracellular matrix are important to the regulation of cellular processes including growth, differentiation and migration. Understanding these processes can benefit greatly from the study of protein-GAG interactions using GAG oligosaccharides of well-defined structure. Materials for such studies have, however, been difficult to obtain because of challenges in synthetic approaches and the extreme structural heterogeneity in GAG polymers. Here, it is demonstrated that diversity in structures of oligosaccharides derived by limited enzymatic digestion of materials from natural sources can be greatly curtailed by a proper selection of combinations of source materials and digestive enzymes, a process aided by an improved understanding of the specificities of certain commercial preparations of hydrolases and lyases. Separation of well-defined oligosaccharides can then be accomplished by size-exclusion chromatography followed by strong anion-exchange chromatography. We focus here on two types of chondroitin sulfate (CS) as starting material (CS-A, and CS-C) and the use of three digestive enzymes with varying specificities (testicular hyaluronidase and bacterial chondroitinases ABC and C). Analysis using nuclear magnetic resonance and mass spectrometry focuses on isolated CS disaccharides and hexasaccharides. In all, 15 CS hexasaccharides have been isolated and characterized. These serve as useful contributions to growing libraries of well-defined GAG oligosaccharides that can be used in further biophysical assays.


Asunto(s)
Condroitín Liasas/metabolismo , Sulfatos de Condroitina/metabolismo , Hialuronoglucosaminidasa/metabolismo , Oligosacáridos/biosíntesis , Animales , Condroitín Liasas/aislamiento & purificación , Hialuronoglucosaminidasa/aislamiento & purificación , Masculino , Oligosacáridos/metabolismo , Psoriasis/enzimología , Ovinos , Especificidad por Sustrato , Testículo/química
13.
Anal Biochem ; 408(1): 147-56, 2011 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-20850409

RESUMEN

A quantitative analysis of a recalled contaminated lot of heparin sodium injection U.S. Pharmacopeia (USP) was undertaken in response to the controversy regarding the exact nature of the contaminant involved in the heparin (HP) crisis. A mass balance analysis of the formulated drug product was performed. After freeze-drying, a 1-ml vial for injection afforded 54.8±0.3 mg of dry solids. The excipients, sodium chloride and residual benzyl alcohol, accounted for 11.4±0.5 and 0.9±0.5 mg, respectively. Active pharmaceutical ingredient (API) represented 41.5±1.0 mg, corresponding to 75.7 wt% of dry mass. Exhaustive treatment of API with specific enzymes, heparin lyases, and/or chondroitin lyases was used to close mass balance. HP represented 30.5±0.5 mg, corresponding to 73.5 wt% of the API. Dermatan sulfate (DS) impurity represented 1.7±0.3 mg, corresponding to 4.1 wt% of API. Contaminant, representing 9.3±0.1 mg corresponding to 22.4 wt% of API, was found in the contaminated formulated drug product. The recovery of contaminant was close to quantitative (95.6-100 wt%). A single contaminant was unambiguously identified as oversulfated chondroitin sulfate (OSCS).


Asunto(s)
Cromatografía Líquida de Alta Presión/métodos , Electroforesis Capilar/métodos , Heparina/análisis , Alcohol Bencilo/análisis , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/análisis , Dermatán Sulfato/análisis , Contaminación de Medicamentos , Liasa de Heparina/metabolismo , Cloruro de Sodio/análisis
14.
J Appl Microbiol ; 111(6): 1319-26, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21914095

RESUMEN

AIMS: Colony morphology variants of fish pathogenic Flavobacterium columnare were studied to clarify the role of colony morphology change in the virulence of the bacterium. Typical rhizoid colony (Rz) variants are virulent and moderately adherent, nonrhizoid rough (R) colony variants are nonvirulent and highly adherent, and soft colony (S) variants are nonvirulent and poorly adherent. METHODS AND RESULTS: Chondroitin AC lyase activity, adhesion to polystyrene at different temperatures and after modification of bacterial surface, and lipopolysaccharide (LPS) profiles of the variants were studied. The chondroitinase activity was significantly higher in the virulent, rhizoid variants than in the rough variants of the same strain. Temperature significantly increased the adhesion of rhizoid variants up to 20°C. Modification of bacterial surface suggested that adhesion molecules contain both carbohydrates and proteins. LPS did not differ between the variants of the same strain. CONCLUSIONS: The results suggest that in Fl. columnare both rhizoid colony morphology and high chondroitinase activity are needed for virulence and that temperature may promote the adhesion of the virulent variants to surfaces at fish farms. SIGNIFICANCE AND IMPACT OF THE STUDY: New information is produced on the virulence mechanisms of Fl. columnare and the reasons behind the survival of the bacterium at fish farms.


Asunto(s)
Adhesión Bacteriana , Condroitín Liasas/metabolismo , Flavobacterium/enzimología , Poliestirenos , Animales , Enfermedades de los Peces/microbiología , Peces/microbiología , Flavobacterium/citología , Flavobacterium/patogenicidad , Lipopolisacáridos/análisis , Temperatura , Virulencia
15.
Enzyme Microb Technol ; 146: 109765, 2021 May.
Artículo en Inglés | MEDLINE | ID: mdl-33812567

RESUMEN

Chondroitin AC lyase can efficiently hydrolyze chondroitin sulfate (CS) to low molecule weight chondroitin sulfate, which has been widely used in clinical therapy, including anti-tumor, anti-oxidation, hypolipidemic, and anti-inflammatory. In this work, a novel chondroitin AC lyase from Pedobacter xixiisoli (PxchonAC) was cloned and overexpressed in Escherichia coli BL21 (DE3). The characterization of PxchonAC showed that it has specific activities on chondroitin sulfate A, Chondroitin sulfate C and hyaluronic acid with 428.77, 270.57, and 136.06 U mg-1, respectively. The Km and Vmax of PxchonAC were 0.61 mg mL-1 and 670.18 U mg-1 using chondroitin sulfate A as the substrate. The enzyme had a half-life of roughly 660 min at 37 °C in the presence of Ca2+ and remained a residual activity of 54 % after incubated at 4 °C for 25 days. Molecular docking revealed that Asn123, His223, Tyr232, Arg286, Arg290, Asn372, and Glu374 were mainly involved in the substrate binding. The enzymatic hydrolysis product was analyzed by gel permeation chromatography, demonstrating PxchonAC could hydrolyze CS efficiently.


Asunto(s)
Oligosacáridos , Secuencia de Aminoácidos , Condroitín Liasas/genética , Condroitín Liasas/metabolismo , Clonación Molecular , Humanos , Simulación del Acoplamiento Molecular , Pedobacter
16.
Int J Biol Macromol ; 165(Pt B): 2314-2325, 2020 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-33132124

RESUMEN

Chondroitin sulfate (CS)/dermatan sulfate (DS) lyases play important roles in structural and functional studies of CS/DS. In this study, a novel CS/DS lyase (enCSase) was identified from the genome of the marine bacterium Photobacterium sp. QA16. This enzyme is easily heterologously expressed and purified as highly active form against various CS, DS and hyaluronic acid (HA). Under the optimal conditions, the specific activities of this enzyme towards CSA, CSC, CSD, CSE, DS and HA were 373, 474, 171, 172, 141 and 97 U/mg of proteins, respectively. As an endolytic enzyme, enCSase degrades HA to unsaturated hexa- and tetrasaccharides but CS/DS to unsaturated tetra- and disaccharides as the final products. Sequencing analysis showed that the structures of tetrasaccharides in the final products of CS variants were not unique but were highly variable, indicating the randomness of substrate degradation by this enzyme. Further studies showed that the smallest substrate of enCSase was octasaccharide for HA but hexasaccharide for CS/DS, which could explain why this enzyme cannot degrade HA hexa- and tetrasaccharides and CS/DS tetrasaccharides further. It is believed that enCSase may be a very useful tool for structural and functional studies and related applications of CS/DS and HA.


Asunto(s)
Condroitín Liasas/metabolismo , Sulfatos de Condroitina/química , Dermatán Sulfato/análogos & derivados , Photobacterium/enzimología , Biocatálisis , Condroitín Liasas/química , Condroitín Liasas/genética , Dermatán Sulfato/química , Mutación/genética , Filogenia , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato , Sulfatos , Factores de Tiempo
17.
Proteomics ; 9(13): 3435-44, 2009 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-19557760

RESUMEN

We report on a novel strategy for identification of specific sulfation motifs in chondroitin/dermatan sulfate (CS/DS) chain derived from decorin (Dcn), based on enzyme cleavage and multistage MS (MS(n)). Released CS/DS chains were digested with chondroitin B and in parallel with AC I lyases to obtain oligosaccharides of known hexuronic acid (HexA) epimerization. The depolymerized chains were separated by gel filtration, and collected di- and hexasaccharides were analyzed by ESI MS(n). MS(2) on bisulfated 4,5-Delta-HexAGalNAc revealed an additional sulfate ester group at 4,5-Delta-HexA. MS(2) data provided evidence upon GlcA sulfation in Dcn due to the fact that 4,5-Delta-HexA derived from GlcA after chondroitin AC I lyase treatment. Hexasaccharide screening in the MS(1) mode indicated direct correlation between the sulfate distribution and HexA epimerization. MS(n) performed on ions that, according to mass calculation, correspond to pentasulfated [4,5-Delta-HexAGalNAc(GlcAGalNAc)(2)], trisulfated [4,5-Delta-HexAGalNAc(GlcAGalNAc)(2)] with IdoA-derived 4,5-Delta-HexA at the nonreducing end, tetrasulfated [4,5-Delta-HexAGalNAc(IdoAGalNAc)(2)] and monosulfated [4,5-Delta-HexAGalNAc(IdoAGalNAc)(2)] with GlcA-derived 4,5-Delta-HexA at the nonreducing end rendered fragmentation patterns confirming the presence of over-, regular, and under-sulfated regions as well as structural motifs having both types of HexA sulfated within Dcn CS/DS.


Asunto(s)
Condroitín Liasas/metabolismo , Glicosaminoglicanos/análisis , Espectrometría de Masa por Ionización de Electrospray/métodos , Azufre/química , Espectrometría de Masas en Tándem/métodos , Secuencia de Carbohidratos , Decorina , Proteínas de la Matriz Extracelular/aislamiento & purificación , Glicosaminoglicanos/química , Glicosaminoglicanos/metabolismo , Humanos , Oligosacáridos/análisis , Oligosacáridos/química , Oligosacáridos/metabolismo , Proteoglicanos/aislamiento & purificación
18.
Anal Biochem ; 385(1): 57-64, 2009 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-18992215

RESUMEN

Liquid chromatography-mass spectrometry was applied to determine the action pattern of different chondroitin lyases. Two commercial enzymes, chondroitinase ABC (Proteus vulgaris) and chondroitinase ACII (Arthrobacter aurescens), having action patterns previously determined by viscosimetry and gel electrophoresis were first examined. Next, the action patterns of recombinant lyases, chondroitinase ABC from Bacteroides thetaiotaomicron (expressed in Escherichia coli) and chondroitinase AC from Flavobacterium heparinum (expressed in its original host), were examined. Chondroitin sulfate A (CS-A, also known as chondroitin-4-sulfate) was used as the substrate for these four lyases. Aliquots taken at various time points were analyzed. The products of chondroitinase ABC (P. vulgaris) and chondroitinase AC (F. heparinum) contained unsaturated oligosaccharides of sizes ranging from disaccharide to decasaccharide, demonstrating that both are endolytic enzymes. The products afforded by chondroitinase ABC (B. thetaiotaomicron) and chondroitinase ACII (A. aurescens) contained primarily unsaturated disaccharide. These two exolytic enzymes showed different minor products, suggesting some subtle specificity differences between the actions of these two exolytic lyases on chondroitin sulfate A.


Asunto(s)
Condroitina ABC Liasa/metabolismo , Condroitín Liasas/metabolismo , Arthrobacter/enzimología , Bacteroides/enzimología , Cromatografía Liquida , Electroforesis en Gel Bidimensional , Activación Enzimática , Espectrometría de Masas , Proteus vulgaris/enzimología , Proteínas Recombinantes/metabolismo , Factores de Tiempo , Viscosidad
19.
J Cell Biol ; 86(2): 688-93, 1980 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-6447156

RESUMEN

Glomerular basement membranes (GBM's) were subjected to digestion in situ with glycosaminoglycan-degrading enzymes to assess the effect of removing glycosaminoglycans (GAG) on the permeability of the GBM to native ferritin (NF). Kidneys were digested by perfusion with enzyme solutions followed by perfusion with NF. In controls treated with buffer alone, NF was seen in high concentration in the capillary lumina, but the tracer did not penetrate to any extent beyond the lamina rara interna (LRI) of the GBM, and litte or no NF reached the urinary spaces. Findings in kidneys perfused with Streptomyces hyaluronidase (removes hyaluronic acid) and chondroitinase-ABC (removes hyaluronic acid, chondroitin 4- and 6-sulfates, and dermatan sulfate, but not heparan sulfate) were the same as in controls. In kidneys digested with heparinase (which removes most GAG including heparan sulfate), NF penetrated the GBM in large amounts and reached the urinary spaces. Increased numbers of tracer molecules were found in the lamina densa (LD) and lamina rara externa (LRE) of the GBM. In control kidneys perfused with cationized ferritin (CF), CF bound to heparan-sulfate rich sites demonstrated previously in the laminae rarae; however, no CF binding was seen in heparinase-digested GBM's, confirming that the sites had been removed by the enzyme treatment. The results demonstrated that removal of heparan sulfate (but not other GAG) leads to a dramatic increase in the permeability of the GBM to NF.


Asunto(s)
Membrana Basal/fisiología , Ferritinas/metabolismo , Glicosaminoglicanos/metabolismo , Heparitina Sulfato/metabolismo , Glomérulos Renales/fisiología , Animales , Transporte Biológico , Condroitín Liasas/metabolismo , Hialuronoglucosaminidasa/metabolismo , Hidrólisis , Glomérulos Renales/ultraestructura , Masculino , Microscopía Electrónica , Permeabilidad , Ratas
20.
J Cell Biol ; 96(5): 1443-50, 1983 May.
Artículo en Inglés | MEDLINE | ID: mdl-6841454

RESUMEN

The proteoglycans and glycosaminoglycans synthesized by embryonic mouse salivary glands during normal morphogenesis and in the presence of beta-xyloside, an inhibitor of branching morphogenesis, have been partially characterized. Control and rho-nitrophenyl-beta-D-xyloside-treated salivary rudiments synthesize proteoglycans that are qualitatively similar, based on mobility on Sepharose CL-4B under dissociative conditions and glycosaminoglycan composition. However, beta-xyloside inhibits total proteoglycan-associated glycosaminoglycan synthesis by 50%, and also stimulates synthesis of large amounts of free chondroitin (dermatan) sulfate. This free glycosaminoglycan accounts for the threefold stimulation of total glycosaminoglycan synthesis in beta-xyloside-treated cultures. Several observations suggest that the disruption of proteoglycan synthesis rather than the presence of large amounts of free glycosaminoglycan is responsible for the inhibition of branching morphogenesis. (a) We have been unable to inhibit branching activity by adding large amounts of chondroitin (dermatan) sulfate, extracted from beta-xyloside-treated cultures, to the medium of salivary rudiments undergoing morphogenesis. (b) In the range of 0.1-0.4 mM beta-xyloside, the dose-dependent inhibition of branching morphogenesis is directly correlated with the inhibition of proteoglycan synthesis. The stimulation of free glycosaminoglycan synthesis is independent of dose in this range, since stimulation is maximal even at the lowest concentration used, 0.1 mM. The data strongly suggest that the inhibition of branching morphogenesis is caused by the disruption of proteoglycan synthesis in beta-xyloside-treated salivary glands.


Asunto(s)
Glicosaminoglicanos/biosíntesis , Glicósidos/farmacología , Proteoglicanos/biosíntesis , Glándulas Salivales/embriología , Animales , Diferenciación Celular/efectos de los fármacos , Condroitín Liasas/metabolismo , Femenino , Ratones , Ácido Nitroso/farmacología , Embarazo , Glándulas Salivales/citología
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