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1.
Bioorg Chem ; 149: 107473, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38820940

RESUMEN

In silico approaches have been employed to design a new series of benzimidazole-containing sulphonamide derivatives and qualified compounds have been synthesized to analyze their potential as antimicrobial agents. Antibacterial screening of all synthesized compounds was done using the broth microdilution method against several human pathogenic bacteria, viz. Gram-positive bacteria [B. cerus (NCIN-2156), B. subtilis (ATCC-6051), S. aureus (NCIM-2079)] and Gram-negative bacteria [P. aeruginosa (NCIM-2036), E. coli (NCIM-2065), and a drug-resistant strain of E. coli (U-621)], and the compounds presented admirable MIC values, ranging between 100-1.56 µg/mL. The combinatorial analysis showed the magnificent inhibitory efficiency of the tested compounds, acquired equipotent to ten-fold more potency compared to original MIC values. An immense synergistic effect was exhibited by the compounds during combination studies with reference drugs chloramphenicol and sulfamethoxazole was presented as fractional inhibitory concentration (∑FIC). Enzyme inhibition studies of all synthesized compounds were done by using peptidyl transferase and dihydropteroate synthase enzymes isolated from E. coli and S. aureus and each of the compound presented the admirable IC50 values, where the lead compound 3 bound to peptidyl transferase (of S. aureus with IC50 363.51 ± 2.54 µM and E. coli IC50 1.04 ± 0.08 µM) & dihydropteroate synthase (of S. aureus IC50 3.51 ± 0.82 µM and E. coli IC50 2.77 ± 0.65 µM), might account for the antimicrobial effect, exhibited excellent inhibition potential. Antifungal screening was also performed employing food poisoning methods against several pathogenic fungal species, viz A. flavus, F. oxysporum, A. niger, and A. brassicae. The obtained result indicated that few compounds can prove to be a potent drug regimen against dreaded MDR strains of microbes. Structural activity relationship (SAR) analysis and docking studies reveal that the presence of electron-withdrawing, polar, and more lipophilic substituents positively favor the antibacterial activity, whereas, electron-withdrawing, more polar, and hydrophilic substituents favor the antifungal activities. A robust coherence has been found in in-silico and in-vitro biological screening results of the compounds.


Asunto(s)
Antibacterianos , Bencimidazoles , Diseño de Fármacos , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Sulfonamidas , Bencimidazoles/farmacología , Bencimidazoles/química , Bencimidazoles/síntesis química , Antibacterianos/farmacología , Antibacterianos/química , Antibacterianos/síntesis química , Relación Estructura-Actividad , Sulfonamidas/química , Sulfonamidas/farmacología , Sulfonamidas/síntesis química , Estructura Molecular , Teoría Funcional de la Densidad , Relación Dosis-Respuesta a Droga , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Grampositivas/efectos de los fármacos , Dihidropteroato Sintasa/antagonistas & inhibidores , Dihidropteroato Sintasa/metabolismo , Humanos , Antifúngicos/farmacología , Antifúngicos/síntesis química , Antifúngicos/química , Escherichia coli/efectos de los fármacos
2.
J Enzyme Inhib Med Chem ; 37(1): 1737-1751, 2022 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-35707920

RESUMEN

A new series of co-drugs was designed based on hybridising the dihydropteroate synthase (DHPS) inhibitor sulphonamide scaffold with the COX-2 inhibitor salicylamide pharmacophore through biodegradable linkage to achieve compounds with synergistic dual inhibition of COX-2/PGE2 axis and DHPS enzyme to enhance antibacterial activity for treatment of septicaemia. Compounds 5 b, 5j, 5n and 5o demonstrated potent in vitro COX-2 inhibitory activity comparable to celecoxib. 5j and 5o exhibited ED50 lower than celecoxib in carrageenan-induced paw edoema test with % PGE2 inhibition higher than celecoxib. Furthermore, 5 b, 5j and 5n showed gastric safety profile like celecoxib. Moreover, in vivo antibacterial screening revealed that, 5j showed activity against S.aureus and E.coli higher than sulfasalazine. While, 5o revealed activity against E.coli higher than sulfasalazine and against S.aureus comparable to sulfasalazine. Compound 5j achieved the target goal as potent inhibitor of COX-2/PGE2 axis and in vivo broad-spectrum antibacterial activity against induced septicaemia in mice.


Asunto(s)
Inhibidores de la Ciclooxigenasa 2 , Dihidropteroato Sintasa , Inhibidores Enzimáticos , Sepsis , Animales , Antibacterianos/farmacología , Antiinflamatorios no Esteroideos/farmacología , Celecoxib/efectos adversos , Ciclooxigenasa 2 , Inhibidores de la Ciclooxigenasa 2/farmacología , Dihidropteroato Sintasa/antagonistas & inhibidores , Dinoprostona , Edema/tratamiento farmacológico , Inhibidores Enzimáticos/farmacología , Ratones , Sepsis/tratamiento farmacológico , Sulfasalazina/farmacología , Sulfonamidas/farmacología
3.
Bioorg Med Chem Lett ; 36: 127819, 2021 03 15.
Artículo en Inglés | MEDLINE | ID: mdl-33513385

RESUMEN

In this study, we have designed and synthesized 2-((5-acetyl-1-(phenyl)-4-methyl-1H-imidazol-2-yl)thio)-N-(4-((benzyl)oxy)phenyl) acetamide derivatives. Antimicrobial activities of all the imidazole derivatives have been examined against Gram-positive and Gram-negative bacteria and results showed that the conjugates have appreciable antibacterial activity. Besides, several analogous were evaluated for their in vitro antiresistant bacterial strains such as Extended-spectrum beta-lactamases (ESBL), Vancomycin-resistant Enterococcus (VRE), and Methicillin-resistant Staphylococcus aureus (MRSA). The SAR revealed that the 12l compound resulted in potency against all bacterial strains as well as ESBL, VRE, and MRSA strains. Lipinski's rule of five, and ADME studies were preformed for all the synthesized compounds with Staphylococcus aureus dihydropteroate synthase (saDHPS) protein (PDB ID: 6CLV) and were found standard drug-likeness properties of conjugates. Moreover, the binding mode of the ligands with the protein study has been examined by molecular docking and results are quite promising. Besides, all the analogous were tested for their in vitro antituberculosis, antimalarial, and antioxidant activity.


Asunto(s)
Antibacterianos/farmacología , Dihidropteroato Sintasa/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Imidazoles/farmacología , Staphylococcus aureus/efectos de los fármacos , Enterococos Resistentes a la Vancomicina/efectos de los fármacos , Antibacterianos/síntesis química , Antibacterianos/química , Dihidropteroato Sintasa/metabolismo , Relación Dosis-Respuesta a Droga , Diseño de Fármacos , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Imidazoles/síntesis química , Imidazoles/química , Ligandos , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Staphylococcus aureus/enzimología , Relación Estructura-Actividad
4.
Molecules ; 26(16)2021 Aug 09.
Artículo en Inglés | MEDLINE | ID: mdl-34443405

RESUMEN

In this study, a new synthetic 1,2,3-triazole-containing disulfone compound was derived from dapsone. Its chemical structure was confirmed using microchemical and analytical data, and it was tested for its in vitro antibacterial potential. Six different pathogenic bacteria were selected. MICs values and ATP levels were determined. Further, toxicity performance was measured using MicroTox Analyzer. In addition, a molecular docking study was performed against two vital enzymes: DNA gyrase and Dihydropteroate synthase. The results of antibacterial abilities showed that the studied synthetic compound had a strong bactericidal effect against all tested bacterial strains, as Gram-negative species were more susceptible to the compound than Gram-positive species. Toxicity results showed that the compound is biocompatible and safe without toxic impact. The molecular docking of the compound showed interactions within the pocket of two enzymes, which are able to stabilize the compound and reveal its antimicrobial activity. Hence, from these results, this study recommends that the established compound could be an outstanding candidate for fighting a broad spectrum of pathogenic bacterial strains, and it might therefore be used for biomedical and pharmaceutical applications.


Asunto(s)
Antibacterianos/química , Dihidropteroato Sintasa/antagonistas & inhibidores , Sulfonas/química , Triazoles/química , Antibacterianos/farmacología , Girasa de ADN/química , Girasa de ADN/farmacología , Dapsona/química , Dihidropteroato Sintasa/química , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Gramnegativas/enzimología , Bacterias Grampositivas/efectos de los fármacos , Bacterias Grampositivas/enzimología , Humanos , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Estructura Molecular , Relación Estructura-Actividad , Sulfonas/farmacología , Inhibidores de Topoisomerasa II/química , Triazoles/farmacología
5.
J Recept Signal Transduct Res ; 40(3): 246-256, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-32098568

RESUMEN

An endless drug-resistant strains of Helicobacter pylori and multitudinous drug reactions are obstacles in the treatment of H. pylori infections, thereby ambitious novel proof-of-concept for inhibitor design was practiced in advancement of medication. Dihydropteroate synthase (DHPS) is an alluring target that plays a great role in folate synthesis pathway essential for amino acids biosynthesis was selected for designing novel drugs to prevent infections caused by pathogenic H. pylori. In the present study, a reliable tertiary structure of DHPS in complex with inhibitor 6MB was constructed by Modeler 9v19. DrugBank compounds of DHPS, published inhibitors, and co-crystal ligand (6MB) were docked against DHPS. The best docked compounds were screened against 28.5 million compounds resulted 1186 structural analogs. Virtual screening workflow and quantum polarized ligand dockings of these compounds against DHPS resulted three leads that showed better XP Gscores, ADME properties, and binding-free energies compared to 6MB, DrugBank compounds, and published inhibitors. The proposed leads were also validated by receiver operative characteristic (ROC) curve metrics in the presence of thousand decoys and the best docked existing compounds against DHPS. Long-range molecular dynamics (MD) simulations for 100 ns were executed after post-docking evaluations. Trajectory analysis showed the lead-DHPS docking complex's inter-molecular interactions were stable throughout the entire runtime of MD simulations than 6MB-DHPS complex and Eliglustat-DHPS complex. The study outcomes showed good competitive binding propensity and active-tunneling of leads over the existing inhibitors, thereby these leads could be ideal inhibitors against DHPS to target H. pylori.


Asunto(s)
Dihidropteroato Sintasa/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Helicobacter pylori/enzimología , Secuencia de Aminoácidos , Bases de Datos de Proteínas , Dihidropteroato Sintasa/química , Dihidropteroato Sintasa/metabolismo , Inhibidores Enzimáticos/química , Helicobacter pylori/efectos de los fármacos , Leucovorina/química , Leucovorina/farmacología , Ligandos , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular
6.
Bioorg Med Chem ; 28(9): 115444, 2020 05 01.
Artículo en Inglés | MEDLINE | ID: mdl-32220521

RESUMEN

New functionalized acrylamide derivatives bearing sulfisoxazole moiety were designed to target bacterial dihydropteroate synthase (DHPS). The in vitro antimicrobial activities of these compounds were assessed. The E-configuration of compound 5b was proved by single crystal X-ray analysis. Compounds 5g and 5h displayed double the activity of ampicillin against B. subtilis. Also, 5h was two times more active than gentamycin against E. coli. Interestingly, compounds 5f-g, 7c, 8a, 8c exhibited two folds the potency of amphotericin B against S. racemosum while 5h displayed three folds the activity of amphotericin B against S. racemosum. Most of the synthesized compounds showed superior activities to the parent sulfisoxazole and were non-toxic to normal cells. DHPS is confirmed to be a putative target for our compounds via antagonizing their antibacterial activity by the folate precursor (p-aminobenzoic acid) and product (methionine) on E. coli ATCC 25922. Docking experiments against DHPS rationalized the observed antibacterial activity. Additionally, compound 5g was evaluated as a selective targeting vector for 99mTc that showed a remarkable uptake and targeting ability towards the infection site that was induced in mice.


Asunto(s)
Acrilamida/farmacología , Antibacterianos/farmacología , Dihidropteroato Sintasa/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Sulfisoxazol/farmacología , Acrilamida/química , Antibacterianos/síntesis química , Antibacterianos/química , Células Cultivadas , Dihidropteroato Sintasa/metabolismo , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Gramnegativas/crecimiento & desarrollo , Bacterias Grampositivas/efectos de los fármacos , Bacterias Grampositivas/crecimiento & desarrollo , Humanos , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Estructura Molecular , Relación Estructura-Actividad , Sulfisoxazol/química
7.
J Cell Biochem ; 119(12): 9838-9852, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30125973

RESUMEN

Leprosy (causative, Mycobacterium leprae) continues to be the persisting public health problem with stable incidence rates, owing to the emergence of dapsone resistance that being the principal drug in the ongoing multidrug therapy. Hence, to overcome the drug resistance, structural modification through medicinal chemistry was used to design newer dapsone derivative(s) (DDs), against folic acid biosynthesis pathway. The approach included theoretical modeling, molecular docking, and molecular dynamic (MD) simulation as well as binding free energy estimation for validation of newly designed seven DDs, before synthesis. Theoretical modeling, docking, and MD simulation studies were used to understand the mode of binding and efficacy of DDs against the wild-type and mutant dihydropteroate synthases (DHPS). Principal component analysis was performed to understand the conformational dynamics of DHPS-DD complexes. Furthermore, the overall stability and negative-binding free energy of DHPS-DD complexes were deciphered using Molecular Mechanics/Poisson-Boltzmann Surface Area technique. Molecular mechanics study revealed that DD3 possesses higher binding free energy than dapsone against mutant DHPS. Energetic contribution analysis portrayed that van der Waals and electrostatic energy contributes profoundly to the overall negative free energy, whereas polar solvation energy opposes the binding. Finally, DD3 was synthesized and characterized using Fourier-transform infrared spectroscopy, UV, liquid chromatography-mass spectrometry, and proton nuclear magnetic resonance techniques. This study suggested that DD3 could be further promoted as newer antileprosy agent. The principles of medicinal chemistry and bioinformatics tools help to locate effective therapeutics to minimize resources and time in current drug development modules.


Asunto(s)
Dapsona/farmacología , Dihidropteroato Sintasa/antagonistas & inhibidores , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Mycobacterium leprae/enzimología , Dapsona/análogos & derivados , Dapsona/metabolismo , Dapsona/uso terapéutico , Dihidropteroato Sintasa/genética , Dihidropteroato Sintasa/metabolismo , Quimioterapia Combinada , Leprostáticos/farmacología , Leprostáticos/uso terapéutico , Mutación , Mycobacterium leprae/efectos de los fármacos , Unión Proteica , Conformación Proteica
8.
Chemistry ; 24(8): 1922-1930, 2018 Feb 06.
Artículo en Inglés | MEDLINE | ID: mdl-29171692

RESUMEN

Dihydropteroate synthase (DHPS) is an enzyme of the folate biosynthesis pathway, which catalyzes the formation of 7,8-dihydropteroate (DHPt) from 6-hydroxymethyl-7,8-dihydropterin pyrophosphate (DHPPP) and para-aminobenzoic acid (pABA). DHPS is the long-standing target of the sulfonamide class of antibiotics that compete with pABA. In the wake of sulfa drug resistance, targeting the structurally rigid (and more conserved) pterin site has been proposed as an alternate strategy to inhibit DHPS in wild-type and sulfa drug resistant strains. Following the work on developing pterin-site inhibitors of the adjacent enzyme 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK), we now present derivatives of 8-mercaptoguanine, a fragment that binds weakly within both enzymes, and quantify sub-µm binding using surface plasmon resonance (SPR) to Escherichia coli DHPS (EcDHPS). Eleven ligand-bound EcDHPS crystal structures delineate the structure-activity relationship observed providing a structural framework for the rational development of novel, substrate-envelope-compliant DHPS inhibitors.


Asunto(s)
Dihidropteroato Sintasa/antagonistas & inhibidores , Inhibidores Enzimáticos/química , Guanina/análogos & derivados , Antibacterianos/química , Antibacterianos/metabolismo , Sitios de Unión , Dominio Catalítico , Cristalografía por Rayos X , Dihidropteroato Sintasa/metabolismo , Inhibidores Enzimáticos/metabolismo , Escherichia coli/enzimología , Guanina/metabolismo , Enlace de Hidrógeno , Ligandos , Unión Proteica , Estructura Terciaria de Proteína , Relación Estructura-Actividad , Especificidad por Sustrato , Sulfonamidas/química , Resonancia por Plasmón de Superficie
9.
Bioorg Chem ; 76: 437-448, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-29275262

RESUMEN

Development of new antimicrobial agents is a good solution to overcome drug-resistance problems. From this perspective, new quinoxaline derivatives bearing various bioactive heterocyclic moieties (thiadiazoles, oxadiazoles, pyrazoles and thiazoles) were designed and synthesized. The newly synthesized compounds were evaluated for their in vitro antibacterial activity against nine bacterial human pathogenic strains using the disc diffusion assay. In general, most of the synthesized compounds exhibited good antibacterial activities. The thiazolyl 11c displayed significant antibacterial activities against P. aeruginosa (MIC, 12.5 µg/mL vs levofloxacin 12.5 µg/mL). Molecular docking studies indicated that the synthesized compounds could occupy both p-amino benzoic acid (PABA) and pterin binding pockets of the dihydropteroate synthase (DHPS), suggesting that the target compounds could act by the inhibition of bacterial DHPS enzyme. The results provide important information for the future design of more potent antibacterial agents.


Asunto(s)
Antibacterianos/farmacología , Dihidropteroato Sintasa/antagonistas & inhibidores , Diseño de Fármacos , Quinoxalinas/farmacología , Antibacterianos/síntesis química , Antibacterianos/química , Antibacterianos/metabolismo , Dominio Catalítico , Dihidropteroato Sintasa/química , Dihidropteroato Sintasa/metabolismo , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Grampositivas/efectos de los fármacos , Enlace de Hidrógeno , Interacciones Hidrofóbicas e Hidrofílicas , Levofloxacino/farmacología , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Estructura Molecular , Unión Proteica , Quinoxalinas/síntesis química , Quinoxalinas/química , Quinoxalinas/metabolismo , Relación Estructura-Actividad , Yersinia pestis/enzimología
10.
Org Biomol Chem ; 15(26): 5593-5601, 2017 Jul 05.
Artículo en Inglés | MEDLINE | ID: mdl-28639657

RESUMEN

Dihydropteroate synthase (DHPS) catalyzes the condensation of 6-hydroxymethyl-7,8-dihydropterin pyrophosphate (DHPPP) with p-aminobenzoic acid (pABA) and is a well validated target for anti-malarial and anti-bacterial drugs. However, in recent years its utility as a therapeutic target has diminished considerably due to multiple mutations. As such, considerable structural biology and medicinal chemistry effort has been expended to understand and overcome this issue. To date no detailed computational analysis of the protein mechanism has been made despite the detailed crystal structures and multiple mechanistic proposals being made. In this study the mechanistic proposals for DHPS have been systematically investigated using a hybrid QM/MM method. We aimed to compare the energetics associated with SN1 and SN2 processes, whether the SN1 process involves a carbocation or neutral DHP intermediate, uncover the identity of the general base in the catalytic mechanism, and understand the differences in substrate vs. inhibitor reactivity. Our results suggest a reaction that follows an SN1 process with the rate determining step being C-O bond breaking to give a carbocation intermediate. Comparative studies on the inhibitor STZ confirm the experimental observations that it is also a DHPS substrate.


Asunto(s)
Dihidropteroato Sintasa/antagonistas & inhibidores , Dihidropteroato Sintasa/metabolismo , Inhibidores Enzimáticos/farmacología , Sulfonamidas/farmacología , Biocatálisis , Dihidropteroato Sintasa/química , Inhibidores Enzimáticos/química , Simulación de Dinámica Molecular , Teoría Cuántica , Especificidad por Sustrato , Sulfonamidas/química , Yersinia pestis/enzimología
11.
Bioorg Med Chem Lett ; 26(16): 3950-4, 2016 08 15.
Artículo en Inglés | MEDLINE | ID: mdl-27423480

RESUMEN

The sulfonamide class of antibiotics has been in continuous use for over 70years. They are thought to act by directly inhibiting dihydropteroate synthase (DHPS), and also acting as prodrugs that sequester pterin pools by forming dead end pterin-sulfonamide conjugates. In this study, eight pterin-sulfonamide conjugates were synthesized using a novel synthetic strategy and their biochemical and microbiological properties were investigated. The conjugates were shown to competitively inhibit DHPS, and inhibition was enhanced by the presence of pyrophosphate that is crucial to catalysis and is known to promote an ordering of the DHPS active site. The co-crystal structure of Yersinia pestis DHPS bound to one of the more potent conjugates revealed a mode of binding that is similar to that of the enzymatic product analog pteroic acid. The antimicrobial activities of the pterin-sulfonamide conjugates were measured against Escherichia coli in the presence and absence of folate precursors and dependent metabolites. These results show that the conjugates have appreciable antibacterial activity and act by an on target, anti-folate pathway mechanism rather than as simple dead end products.


Asunto(s)
Antibacterianos/química , Dihidropteroato Sintasa/antagonistas & inhibidores , Pterinas/química , Sulfonamidas/química , Antibacterianos/síntesis química , Antibacterianos/farmacología , Sitios de Unión , Dominio Catalítico , Cristalografía por Rayos X , Dihidropteroato Sintasa/metabolismo , Escherichia coli/efectos de los fármacos , Ácido Fólico/química , Simulación del Acoplamiento Molecular , Relación Estructura-Actividad , Yersinia pestis/enzimología
12.
J Enzyme Inhib Med Chem ; 31(2): 236-46, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-25815670

RESUMEN

Microbial resistance to the available drugs poses a serious threat in modern medicine. We report the design, synthesis and in vitro antimicrobial evaluation of new functionalized 2,3-dihydrothiazoles and 4-thiazolidinones tagged with sulfisoxazole moiety. Compound 8d was most active against Bacillis subtilis (MIC, 0.007 µg/mL). Moreover, compounds 7c-d and 8c displayed significant activities against B. subtilis and Streptococcus pneumoniae (MIC, 0.03-0.06 µg/mL and 0.06-0.12 µg/mL versus ampicillin 0.24 µg/mL and 0.12 µg/mL; respectively). Compounds 7a and 7c-d were highly potent against Escherichia coli (MIC, 0.49-0.98 µg/mL versus gentamycin 1.95 µg/mL). On the other hand, compounds 7e and 9c were fourfolds more active than amphotericin B against Syncephalastrum racemosum. Molecular docking studies showed that the synthesized compounds could act as inhibitors for the dihydropteroate synthase enzyme (DHPS). This study is a platform for the future design of more potent antimicrobial agents.


Asunto(s)
Antiinfecciosos/química , Antiinfecciosos/farmacología , Relación Estructura-Actividad , Tiazoles/química , Antiinfecciosos/síntesis química , Sitios de Unión , Técnicas de Química Sintética , Dihidropteroato Sintasa/antagonistas & inhibidores , Dihidropteroato Sintasa/química , Dihidropteroato Sintasa/metabolismo , Diseño de Fármacos , Evaluación Preclínica de Medicamentos/métodos , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Sulfisoxazol/química , Tiazoles/farmacología
13.
J Biol Chem ; 288(32): 23447-56, 2013 Aug 09.
Artículo en Inglés | MEDLINE | ID: mdl-23779105

RESUMEN

para-Aminosalicylic acid (PAS) is one of the antimycobacterial drugs currently used for multidrug-resistant tuberculosis. Although it has been in clinical use for over 60 years, its mechanism(s) of action remains elusive. Here we report that PAS is a prodrug targeting dihydrofolate reductase (DHFR) through an unusual and novel mechanism of action. We provide evidences that PAS is incorporated into the folate pathway by dihydropteroate synthase (DHPS) and dihydrofolate synthase (DHFS) to generate a hydroxyl dihydrofolate antimetabolite, which in turn inhibits DHFR enzymatic activity. Interestingly, PAS is recognized by DHPS as efficiently as its natural substrate para-amino benzoic acid. Chemical inhibition of DHPS or mutation in DHFS prevents the formation of the antimetabolite, thereby conferring resistance to PAS. In addition, we identified a bifunctional enzyme (riboflavin biosynthesis protein (RibD)), a putative functional analog of DHFR in a knock-out strain. This finding is further supported by the identification of PAS-resistant clinical isolates encoding a RibD overexpression mutation displaying cross-resistance to genuine DHFR inhibitors. Our findings reveal that a metabolite of PAS inhibits DHFR in the folate pathway. RibD was shown to act as a functional analog of DHFR, and as for DHFS, both were shown to be associated in PAS resistance in laboratory strains and clinical isolates.


Asunto(s)
Ácido Aminosalicílico , Antituberculosos , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/metabolismo , Antagonistas del Ácido Fólico , Profármacos , Tetrahidrofolato Deshidrogenasa/metabolismo , Ácido Aminosalicílico/farmacocinética , Ácido Aminosalicílico/farmacología , Antituberculosos/farmacocinética , Antituberculosos/farmacología , Proteínas Bacterianas/genética , Dihidropteroato Sintasa/antagonistas & inhibidores , Dihidropteroato Sintasa/genética , Dihidropteroato Sintasa/metabolismo , Antagonistas del Ácido Fólico/farmacocinética , Antagonistas del Ácido Fólico/farmacología , Técnicas de Silenciamiento del Gen , Mutación , Profármacos/farmacocinética , Profármacos/farmacología , Tetrahidrofolato Deshidrogenasa/genética
14.
Plant Physiol ; 162(3): 1552-65, 2013 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23690535

RESUMEN

As sessile organisms growing in an ever-changing environment, plants must integrate multiple regulatory inputs to promote the appropriate developmental responses. One such nutritional signal is cellular sugar levels, which rise and fall throughout the day and affect a variety of developmental processes. To uncover signaling pathways that modulate sugar perception, compounds from the Library of Active Compounds in Arabidopsis were screened for the ability to perturb developmental responses to sucrose (Suc) in Arabidopsis (Arabidopsis thaliana) seedlings. This screen found that sulfonamides, which inhibit folate biosynthesis in plants, restrict hypocotyl elongation in a sugar-dependent fashion. Transcriptome analysis identified a small set of transcripts that respond to the interaction between sulfonamide and Suc, including a number of transcripts encoding Auxin/Indole-3-Acetic Acids, negative regulators of auxin signal transduction. Chemical inhibition of auxin transport or genetic disruption of auxin signaling relieved this interaction, suggesting that responses to these two nutritional stimuli are mediated by auxin. Reporter systems used to track auxin signaling and distribution showed enhanced activity in the vascular region of the hypocotyl in response to cotreatment of Suc and sulfonamide, yet no change in auxin abundance was observed. Taken together, these findings suggest that the interplay between Suc and folates acts to fine-tune auxin sensitivity and influences auxin distribution during seedling development.


Asunto(s)
Arabidopsis/metabolismo , Ácido Fólico/metabolismo , Ácidos Indolacéticos/metabolismo , Transducción de Señal , Sacarosa/metabolismo , Arabidopsis/efectos de los fármacos , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Transporte Biológico , Dihidropteroato Sintasa/antagonistas & inhibidores , Relación Dosis-Respuesta a Droga , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Hipocótilo/crecimiento & desarrollo , Hipocótilo/metabolismo , Plantas Modificadas Genéticamente , Plantones/crecimiento & desarrollo , Plantones/metabolismo , Sacarosa/farmacología , Sulfametoxazol/farmacología
15.
J Enzyme Inhib Med Chem ; 29(3): 379-87, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23627736

RESUMEN

Recent advances in microbial genomics, synthetic organic chemistry and X-ray crystallography provided opportunities to identify novel antibacterial targets for the development of new classes of antibiotics and to design more potent antimicrobial compounds derived from existing antibiotics in clinical use for decades. The antimetabolites, sulfa drugs and trimethoprim (TMP)-like agents, are inhibitors of three families of enzymes. One family belongs to the carbonic anhydrases, which catalyze a simple but physiologically relevant reaction in all life kingdoms, carbon dioxide hydration to bicarbonate and protons. The other two enzyme families are involved in the synthesis of tetrahydrofolate (THF), i.e. dihydropteroate synthase (DHPS) and dihydrofolate reductase. The antibacterial agents belonging to the THF and DHPS inhibitors were developed decades ago and present significant bacterial resistance problems. However, the molecular mechanisms of drug resistance both to sulfa drugs and TMP-like inhibitors were understood in detail only recently, when several X-ray crystal structures of such enzymes in complex with their inhibitors were reported. Here, we revue the state of the art in the field of antibacterials based on inhibitors of these three enzyme families.


Asunto(s)
Antimetabolitos/farmacología , Proteínas Bacterianas/antagonistas & inhibidores , Anhidrasas Carbónicas/química , Dihidropteroato Sintasa/antagonistas & inhibidores , Sulfanilamidas/farmacología , Tetrahidrofolato Deshidrogenasa/química , Trimetoprim/farmacología , Antibacterianos/síntesis química , Antibacterianos/farmacología , Antimetabolitos/síntesis química , Bacterias/efectos de los fármacos , Bacterias/enzimología , Proteínas Bacterianas/química , Inhibidores de Anhidrasa Carbónica/síntesis química , Inhibidores de Anhidrasa Carbónica/farmacología , Dihidropteroato Sintasa/química , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Antagonistas del Ácido Fólico/síntesis química , Antagonistas del Ácido Fólico/farmacología , Sulfanilamidas/síntesis química , Trimetoprim/análogos & derivados , Trimetoprim/síntesis química
16.
Molecules ; 19(2): 1672-84, 2014 Jan 29.
Artículo en Inglés | MEDLINE | ID: mdl-24481116

RESUMEN

In the present work, the knowledge on target proteins of standard antibiotics was extended to antimicrobial mushroom compounds. Docking studies were performed for 34 compounds in order to evaluate their affinity to bacterial proteins that are known targets for some antibiotics with different mechanism of action: inhibitors of cell wall synthesis, inhibitors of protein synthesis, inhibitors of nucleic acids synthesis and antimetabolites. After validation of the molecular docking approach, virtual screening of all the compounds was performed against penicillin binding protein 1a (PBP1a), alanine racemase (Alr), d-alanyl-d-alanine synthetase (Ddl), isoleucyl-tRNA sinthetase (IARS), DNA gyrase subunit B, topoisomerase IV (TopoIV), dihydropteroate synthetase (DHPS) and dihydrofolate reductase (DHFR) using AutoDock4. Overall, it seems that for the selected mushroom compounds (namely, enokipodins, ganomycins and austrocortiluteins) the main mechanism of the action is the inhibition of cell wall synthesis, being Alr and Ddl probable protein targets.


Asunto(s)
Antraquinonas/química , Hidroquinonas/química , Simulación del Acoplamiento Molecular , Sesquiterpenos/química , Agaricales/química , Antraquinonas/farmacología , Antibacterianos/química , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/biosíntesis , Dihidropteroato Sintasa/antagonistas & inhibidores , Humanos , Hidroquinonas/farmacología , Pruebas de Sensibilidad Microbiana , Sesquiterpenos/farmacología
17.
Bioorg Med Chem ; 21(11): 3080-9, 2013 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-23602620

RESUMEN

A new series of 4-aminochloroquinoline based sulfonamides were synthesized and evaluated for antiamoebic and antimalarial activities. Out of the eleven compounds evaluated (F1-F11), two of them (F3 and F10) showed good activity against Entamoeba histolytica (IC50 <5 µM). Three of the compounds (F5, F7 and F8) also displayed antimalarial activity against the chloroquine-resistant (FCR-3) strain of Plasmodium falciparum with IC50 values of 2 µM. Compound F7, whose crystal structure was also determined, inhibited ß-haematin formation more potently than quinine. To further understand the action of hybrid molecules F7 and F8, molecular docking was carried out against the homology model of P. falciparum enzyme dihydropteroate synthase (PfDHPS). The complexes showed that the inhibitors place themselves nicely into the active site of the enzyme and exhibit interaction energy which is in accordance with our activity profile data. Application of Lipinski 'rule of five' on all the compounds (F1-F11) suggested high drug likeness of F7 and F8, similar to quinine.


Asunto(s)
Antiprotozoarios/síntesis química , Dihidropteroato Sintasa/antagonistas & inhibidores , Entamoeba histolytica/efectos de los fármacos , Piperazinas/síntesis química , Plasmodium falciparum/efectos de los fármacos , Proteínas Protozoarias/antagonistas & inhibidores , Quinolinas/síntesis química , Secuencia de Aminoácidos , Antiprotozoarios/farmacología , Supervivencia Celular/efectos de los fármacos , Cloroquina/farmacología , Cristalografía por Rayos X , Dihidropteroato Sintasa/química , Resistencia a Medicamentos , Entamoeba histolytica/enzimología , Entamoeba histolytica/crecimiento & desarrollo , Eritrocitos/efectos de los fármacos , Eritrocitos/parasitología , Hemoproteínas/antagonistas & inhibidores , Hemoproteínas/química , Hemólisis/efectos de los fármacos , Humanos , Simulación del Acoplamiento Molecular , Datos de Secuencia Molecular , Piperazinas/farmacología , Plasmodium falciparum/enzimología , Plasmodium falciparum/crecimiento & desarrollo , Proteínas Protozoarias/química , Quinina/farmacología , Quinolinas/farmacología , Relación Estructura-Actividad
18.
Bioorg Med Chem ; 19(3): 1298-305, 2011 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-21216602

RESUMEN

The increasing emergence of resistant bacteria drives us to design and develop new antimicrobial agents. Pursuant to that goal, a new targeting approach of the dihydropteroate synthase enzyme, which serves as the site of action for the sulfonamide class of antimicrobial agents, is being explored. Using structural information, a new class of transition state mimics has been designed and synthesized that have the capacity to bind to the pterin, phosphate and para-amino binding sites. The design, synthesis and evaluation of these compounds as inhibitors of Bacillusanthracis dihydropteroate synthase is described herein. Outcomes from this work have identified the first trivalent inhibitors of dihydropteroate synthase whose activity displayed slow binding inhibition. The most active compounds in this series contained an oxidized pterin ring. The binding of these inhibitors was modeled into the dihydropteroate synthase active site and demonstrated a good correlation with the observed bioassay data, as well as provided important insight for the future design of higher affinity transition state mimics.


Asunto(s)
Antibacterianos/síntesis química , Antibacterianos/farmacología , Dihidropteroato Sintasa/antagonistas & inhibidores , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Sondas Moleculares , Organofosfonatos/síntesis química , Pirimidinonas/síntesis química , Antibacterianos/química , Bacillus anthracis/efectos de los fármacos , Bacillus anthracis/enzimología , Dihidropteroato Sintasa/metabolismo , Diseño de Fármacos , Modelos Moleculares , Estructura Molecular , Organofosfonatos/química , Organofosfonatos/farmacología , Pterinas/química , Pirimidinonas/química , Pirimidinonas/farmacología , Relación Estructura-Actividad , Sulfonamidas/química , Sulfonamidas/farmacología
19.
Malar J ; 9: 247, 2010 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-20799995

RESUMEN

BACKGROUND: Mutations in the dihydrofolate reductase (dhfr) and dihydropteroate synthase (dhps) genes of Plasmodium falciparum are associated with resistance to anti-folate drugs, most notably sulphadoxine-pyrimethamine (SP). Molecular studies document the prevalence of these mutations in parasite populations across the African continent. However, there is no systematic review examining the collective epidemiological significance of these studies. This meta-analysis attempts to: 1) summarize genotype frequency data that are critical for molecular surveillance of anti-folate resistance and 2) identify the specific challenges facing the development of future molecular databases. METHODS: This review consists of 220 studies published prior to 2009 that report the frequency of select dhfr and dhps mutations in 31 African countries. Maps were created to summarize the location and prevalence of the highly resistant dhfr triple mutant (N51I, C59R, S108N) genotype and dhps double mutant (A437G and K540E) genotype in Africa. A hierarchical mixed effects logistic regression was used to examine the influence of various factors on reported mutant genotype frequency. These factors include: year and location of study, age and clinical status of sampled population, and reporting conventions for mixed genotype data. RESULTS: A database consisting of dhfr and dhps mutant genotype frequencies from all African studies that met selection criteria was created for this analysis. The map illustrates particularly high prevalence of both the dhfr triple and dhps double mutant genotypes along the Kenya-Tanzania border and Malawi. The regression model shows a statistically significant increase in the prevalence of both the dhfr triple and dhps double mutant genotypes in Africa. CONCLUSION: Increasing prevalence of the dhfr triple mutant and dhps double mutant genotypes in Africa are consistent with the loss of efficacy of SP for treatment of clinical malaria in most parts of this continent. Continued assessment of the effectiveness of SP for the treatment of clinical malaria and intermittent preventive treatment in pregnancy is needed. The creation of a centralized resistance data network, such as the one proposed by the WorldWide Antimalarial Resistance Network (WWARN), will become a valuable resource for planning timely actions to combat drug resistant malaria.


Asunto(s)
Antimaláricos/farmacología , Dihidropteroato Sintasa/genética , Resistencia a Medicamentos , Plasmodium falciparum/efectos de los fármacos , Tetrahidrofolato Deshidrogenasa/genética , África , Sustitución de Aminoácidos , ADN Protozoario/genética , Dihidropteroato Sintasa/antagonistas & inhibidores , Combinación de Medicamentos , Frecuencia de los Genes , Genotipo , Humanos , Proteínas Mutantes/antagonistas & inhibidores , Proteínas Mutantes/genética , Mutación Missense , Plasmodium falciparum/enzimología , Plasmodium falciparum/genética , Proteínas Protozoarias/antagonistas & inhibidores , Proteínas Protozoarias/genética , Pirimetamina/farmacología , Sulfadoxina/farmacología
20.
J Mol Model ; 26(6): 138, 2020 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-32415338

RESUMEN

The theoretical charge density study for the gas phase of anti-leprosy drug Dapsone has been carried out in the light of the theory of atoms in molecules using density functional theory employing B3LYP(6-311G++(d, p) hybrid functional completed with dispersion corrections. The Hirshfeld surface analysis as well as fingerprint plots has been utilized to visualize and quantify the intermolecular contacts present in the molecule. The topological properties such as electron density and its Laplacian, delocalization index have been elucidated to throw light into the chemical bonding and atomic and molecular details. The electron localization function has been used to visualize and deduce information on the lone pair and the subshells of the Cl atom. The electrostatic potential visualizes the positive and negative electrostatic potential regions which are susceptible to nucleophilic and electrophilic attack. On the whole, this study provides an exact mechanism, interaction, and topological and electrostatic properties of the drug through theoretical insights which all will be a platform for our further investigation of the interaction between dapsone and dihydropteroate synthase (DHPS).


Asunto(s)
Dapsona/química , Dihidropteroato Sintasa/antagonistas & inhibidores , Modelos Moleculares , Proteínas Bacterianas/antagonistas & inhibidores , Química Computacional , Dapsona/farmacología , Enlace de Hidrógeno , Leprostáticos/química , Leprostáticos/farmacología , Simulación del Acoplamiento Molecular , Mycobacterium leprae/enzimología , Electricidad Estática
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