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1.
J Biol Chem ; 300(1): 105470, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-38118236

RESUMEN

The prevailing notion that reduced cofactors NADH and FADH2 transfer electrons from the tricarboxylic acid cycle to the mitochondrial electron transfer system creates ambiguities regarding respiratory Complex II (CII). CII is the only membrane-bound enzyme in the tricarboxylic acid cycle and is part of the electron transfer system of the mitochondrial inner membrane feeding electrons into the coenzyme Q-junction. The succinate dehydrogenase subunit SDHA of CII oxidizes succinate and reduces the covalently bound prosthetic group FAD to FADH2 in the canonical forward tricarboxylic acid cycle. However, several graphical representations of the electron transfer system depict FADH2 in the mitochondrial matrix as a substrate to be oxidized by CII. This leads to the false conclusion that FADH2 from the ß-oxidation cycle in fatty acid oxidation feeds electrons into CII. In reality, dehydrogenases of fatty acid oxidation channel electrons to the Q-junction but not through CII. The ambiguities surrounding Complex II in the literature and educational resources call for quality control, to secure scientific standards in current communications of bioenergetics, and ultimately support adequate clinical applications. This review aims to raise awareness of the inherent ambiguity crisis, complementing efforts to address the well-acknowledged issues of credibility and reproducibility.


Asunto(s)
Complejo II de Transporte de Electrones , Electrones , Ácidos Grasos , Flavina-Adenina Dinucleótido , Succinato Deshidrogenasa , Transporte de Electrón , Ácidos Grasos/química , Ácidos Grasos/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Oxidación-Reducción , Reproducibilidad de los Resultados , Succinato Deshidrogenasa/metabolismo , Ciclo del Ácido Cítrico , Mitocondrias/metabolismo , Ubiquinona/metabolismo , Ácido Succínico/metabolismo , Complejo II de Transporte de Electrones/metabolismo , Metabolismo Energético
2.
Biochemistry ; 63(18): 2380-2389, 2024 Sep 17.
Artículo en Inglés | MEDLINE | ID: mdl-39213510

RESUMEN

Flavin cofactors offer a wide range of chemical mechanisms to support a great diversity in catalytic function. As a corollary, such diversity necessitates careful control within each flavoprotein to limit its function to an appropriate subset of possible reactions and substrates. This task falls to the protein environment surrounding the flavin in most enzymes. For iodotyrosine deiodinase that catalyzes a reductive dehalogenation of halotyrosines, substrates can dictate the chemistry available to the flavin. Their ability to stabilize the necessary one-electron reduced semiquinone form of flavin strictly depends on a direct coordination between the flavin and α-ammonium and carboxylate groups of its substrates. While perturbations to the carboxylate group do not significantly affect binding to the resting oxidized form of the deiodinase, dehalogenation (kcat/Km) is suppressed by over 2000-fold. Lack of the α-ammonium group abolishes detectable binding and dehalogenation. Substitution of the ammonium group with a hydroxyl group does not restore measurable binding but does support dehalogenation with an efficiency greater than those of the carboxylate derivatives. Consistent with these observations, the flavin semiquinone does not accumulate during redox titration in the presence of inert substrate analogues lacking either the α-ammonium or carboxylate groups. As a complement, a nitroreductase activity based on hydride transfer is revealed for the appropriate substrates with perturbations to their zwitterion.


Asunto(s)
Yoduro Peroxidasa , Yoduro Peroxidasa/metabolismo , Yoduro Peroxidasa/química , Flavinas/metabolismo , Flavinas/química , Especificidad por Sustrato , Oxidación-Reducción , Cinética , Flavina-Adenina Dinucleótido/metabolismo , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/análogos & derivados , Dinitrocresoles/metabolismo , Dinitrocresoles/química , Halogenación
3.
J Biol Chem ; 298(4): 101733, 2022 04.
Artículo en Inglés | MEDLINE | ID: mdl-35176283

RESUMEN

Bifurcating electron transfer flavoproteins (Bf ETFs) are important redox enzymes that contain two flavin adenine dinucleotide (FAD) cofactors, with contrasting reactivities and complementary roles in electron bifurcation. However, for both the "electron transfer" (ET) and the "bifurcating" (Bf) FADs, the only charged amino acid within 5 Å of the flavin is a conserved arginine (Arg) residue. To understand how the two sites produce different reactivities utilizing the same residue, we investigated the consequences of replacing each of the Arg residues with lysine, glutamine, histidine, or alanine. We show that absence of a positive charge in the ET site diminishes accumulation of the anionic semiquinone (ASQ) that enables the ET flavin to act as a single electron carrier, due to depression of the oxidized versus. ASQ reduction midpoint potential, E°OX/ASQ. Perturbation of the ET site also affected the remote Bf site, whereas abrogation of Bf FAD binding accelerated chemical modification of the ET flavin. In the Bf site, removal of the positive charge impaired binding of FAD or AMP, resulting in unstable protein. Based on pH dependence, we propose that the Bf site Arg interacts with the phosphate(s) of Bf FAD or AMP, bridging the domain interface via a conserved peptide loop ("zipper") and favoring nucleotide binding. We further propose a model that rationalizes conservation of the Bf site Arg even in non-Bf ETFs, as well as AMP's stabilizing role in the latter, and provides a mechanism for coupling Bf flavin redox changes to domain-scale motion.


Asunto(s)
Arginina , Flavina-Adenina Dinucleótido/análogos & derivados , Adenosina Monofosfato/metabolismo , Arginina/metabolismo , Transporte de Electrón , Flavoproteínas Transportadoras de Electrones/química , Flavoproteínas Transportadoras de Electrones/metabolismo , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/metabolismo , Flavinas/química , Flavinas/metabolismo , Oxidación-Reducción
4.
Nat Chem Biol ; 17(1): 104-112, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33139950

RESUMEN

Tyrian purple, mainly composed of 6,6'-dibromoindigo (6BrIG), is an ancient dye extracted from sea snails and was recently demonstrated as a biocompatible semiconductor material. However, its synthesis remains limited due to uncharacterized biosynthetic pathways and the difficulty of regiospecific bromination. Here, we introduce an effective 6BrIG production strategy in Escherichia coli using tryptophan 6-halogenase SttH, tryptophanase TnaA and flavin-containing monooxygenase MaFMO. Since tryptophan halogenases are expressed in highly insoluble forms in E. coli, a flavin reductase (Fre) that regenerates FADH2 for the halogenase reaction was used as an N-terminal soluble tag of SttH. A consecutive two-cell reaction system was designed to overproduce regiospecifically brominated precursors of 6BrIG by spatiotemporal separation of bromination and bromotryptophan degradation. These approaches led to 315.0 mg l-1 6BrIG production from tryptophan and successful synthesis of regiospecifically dihalogenated indigos. Furthermore, it was demonstrated that 6BrIG overproducing cells can be directly used as a bacterial dye.


Asunto(s)
Proteínas de Escherichia coli/genética , Escherichia coli/genética , FMN Reductasa/genética , Regulación Bacteriana de la Expresión Génica , Indoles/metabolismo , Oxidorreductasas/genética , Oxigenasas/genética , Triptófano/metabolismo , Triptofanasa/genética , Materiales Biocompatibles/química , Materiales Biocompatibles/metabolismo , Clonación Molecular , Colorantes/aislamiento & purificación , Colorantes/metabolismo , Escherichia coli/enzimología , Proteínas de Escherichia coli/metabolismo , FMN Reductasa/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Halogenación , Carmin de Índigo/aislamiento & purificación , Carmin de Índigo/metabolismo , Indoles/aislamiento & purificación , Ingeniería Metabólica/métodos , Oxidorreductasas/metabolismo , Oxigenasas/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Semiconductores , Estereoisomerismo , Triptofanasa/metabolismo
5.
Arch Biochem Biophys ; 715: 109100, 2022 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-34864048

RESUMEN

d-Arginine dehydrogenase from Pseudomonas aeruginosa (PaDADH) catalyzes the flavin-dependent oxidation of d-arginine and other d-amino acids. Here, we report the crystal structure at 1.29 Å resolution for PaDADH-Y249F expressed and co-crystallized with d-arginine. The overall structure of PaDADH-Y249F resembled PaDADH-WT, but the electron density for the flavin cofactor was ambiguous, suggesting the presence of modified flavins. Electron density maps and mass spectrometric analysis confirmed the presence of both N5-(4-guanidino-oxobutyl)-FAD and 6-OH-FAD in a single crystal of PaDADH-Y249F and helped with the further refinement of the X-ray crystal structure. The versatility of the reduced flavin is apparent in the PaDADH-Y249F structure and is evidenced by the multiple functions it can perform in the same active site.


Asunto(s)
Aminoácido Oxidorreductasas/química , Proteínas Bacterianas/química , Flavina-Adenina Dinucleótido/análogos & derivados , Guanidinas/química , Aminoácido Oxidorreductasas/genética , Aminoácido Oxidorreductasas/metabolismo , Arginina/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Dominio Catalítico , Cristalografía por Rayos X , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/metabolismo , Guanidinas/metabolismo , Enlace de Hidrógeno , Mutación , Unión Proteica , Pseudomonas aeruginosa/enzimología , Electricidad Estática
6.
Photochem Photobiol Sci ; 21(6): 959-982, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-35218554

RESUMEN

Flavins are photoenzymatic cofactors often exploiting the absorption of light to energize photoinduced redox chemistry in a variety of contexts. Both flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) are used for this function. The study of these photoenzymes has been facilitated using flavin analogs. Most of these analogs involve modification of the flavin ring, and there is recent evidence that adenine (Ade)-modified FAD can affect enzyme turnover, but so far this has only been shown for enzymes where the adenine and flavin rings are close to each other in a stacked conformation. FAD is also stacked in aqueous solution, and its photodynamics are quite different from unstacked FAD or FMN. Oxidized photoexcited FAD decays rapidly, presumably through PET with Ade as donor and Fl* as acceptor. Definitive identification of the spectral signatures of Ade∙+ and Fl∙- radicals is elusive. Here we use the FAD analog Flavin 1,N6-Ethenoadenine Dinucleotide (εFAD) to study how different photochemical outcomes depend on the identity of the Ade moiety in stacked FAD and its analog εFAD. We have used UV-Vis transient absorption spectroscopy complemented by TD-DFT calculations to investigate the excited state evolution of the flavins. In FAD*, no radicals were observed, suggesting that FAD* does not undergo PET. εFAD* kinetics showed a broad absorption band that suggests a charge transfer state exists upon photoexcitation with evidence for radical pair formation. Surprisingly, significant triplet flavin was produced from εFAD* We hypothesize that the dipolar (ε)Ade moieties differentially modulate the singlet-triplet energy gap, resulting in different intersystem crossing rates. The additional electron density on the etheno group of εFAD supplies better orbital overlap with the flavin S1 state, accelerating charge transfer in that molecule.


Asunto(s)
Mononucleótido de Flavina , Flavina-Adenina Dinucleótido , Adenina/química , Teoría Funcional de la Densidad , Dinitrocresoles , Mononucleótido de Flavina/química , Flavina-Adenina Dinucleótido/análogos & derivados , Flavinas/química , Espectrometría de Fluorescencia
7.
Proc Natl Acad Sci U S A ; 115(25): E5706-E5715, 2018 06 19.
Artículo en Inglés | MEDLINE | ID: mdl-29866842

RESUMEN

The stability of organic dyes against photobleaching is critical in single-molecule tracking and localization microscopy. Since oxygen accelerates photobleaching of most organic dyes, glucose oxidase is commonly used to slow dye photobleaching by depleting oxygen. As demonstrated here, pyranose-2-oxidase slows bleaching of Alexa647 dye by ∼20-fold. However, oxygen deprivation may pose severe problems for live cells by reducing mitochondrial oxidative phosphorylation and ATP production. We formulate a method to sustain intracellular ATP levels in the presence of oxygen scavengers. Supplementation with metabolic intermediates including glyceraldehyde, glutamine, and α-ketoisocaproate maintained the intracellular ATP level for at least 10 min by balancing between FADH2 and NADH despite reduced oxygen levels. Furthermore, those metabolites supported ATP-dependent synthesis of phosphatidylinositol 4,5-bisphosphate and internalization of PAR2 receptors. Our method is potentially relevant to other circumstances that involve acute drops of oxygen levels, such as ischemic damage in the brain or heart or tissues for transplantation.


Asunto(s)
Adenosina Trifosfato/metabolismo , Oxígeno/metabolismo , Carbocianinas/metabolismo , Línea Celular , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Fluorescencia , Colorantes Fluorescentes/metabolismo , Glucosa Oxidasa/metabolismo , Glutamina/metabolismo , Células HEK293 , Humanos , Cetoácidos/metabolismo , Microscopía Fluorescente/métodos , Mitocondrias/metabolismo , NAD/metabolismo , Fosfatidilinositol 4,5-Difosfato/metabolismo , Fotoblanqueo , Receptor PAR-2/metabolismo
8.
Int J Mol Sci ; 22(17)2021 Aug 25.
Artículo en Inglés | MEDLINE | ID: mdl-34502080

RESUMEN

Fragile X-associated tremor/ataxia syndrome (FXTAS) is a neurodegenerative disorder affecting subjects (premutation carriers) with a 55-200 CGG-trinucleotide expansion in the 5'UTR of the fragile X mental retardation 1 gene (FMR1) typically after age 50. As both the presence of white matter hyperintensities (WMHs) and atrophied gray matter on magnetic resonance imaging (MRI) are linked to age-dependent decline in cognition, here we tested whether MRI outcomes (WMH volume (WMHV) and brain volume) were correlated with mitochondrial bioenergetics from peripheral blood monocytic cells in 87 carriers with and without FXTAS. As a parameter assessing cumulative damage, WMHV was correlated to both FXTAS stages and age, and brain volume discriminated between carriers and non-carriers. Similarly, mitochondrial mass and ATP production showed an age-dependent decline across all participants, but in contrast to WMHV, only FADH2-linked ATP production was significantly reduced in carriers vs. non-carriers. In carriers, WMHV negatively correlated with ATP production sustained by glucose-glutamine and FADH2-linked substrates, whereas brain volume was positively associated with the latter and mitochondrial mass. The observed correlations between peripheral mitochondrial bioenergetics and MRI findings-and the lack of correlations with FXTAS diagnosis/stages-may stem from early brain bioenergetic deficits even before overt FXTAS symptoms and/or imaging findings.


Asunto(s)
Adenosina Trifosfato/metabolismo , Envejecimiento/metabolismo , Ataxia/metabolismo , Encéfalo/diagnóstico por imagen , Síndrome del Cromosoma X Frágil/metabolismo , Monocitos/metabolismo , Temblor/metabolismo , Sustancia Blanca/diagnóstico por imagen , Adulto , Anciano , Ataxia/diagnóstico por imagen , Encéfalo/crecimiento & desarrollo , Células Cultivadas , Metabolismo Energético , Femenino , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Proteína de la Discapacidad Intelectual del Síndrome del Cromosoma X Frágil/genética , Proteína de la Discapacidad Intelectual del Síndrome del Cromosoma X Frágil/metabolismo , Síndrome del Cromosoma X Frágil/diagnóstico por imagen , Humanos , Masculino , Persona de Mediana Edad , Mitocondrias/metabolismo , Temblor/diagnóstico por imagen , Sustancia Blanca/crecimiento & desarrollo
9.
Biochemistry ; 58(18): 2362-2372, 2019 05 07.
Artículo en Inglés | MEDLINE | ID: mdl-30964996

RESUMEN

There is an increasing realization that structure-based drug design may show improved success by understanding the ensemble of conformations accessible to an enzyme and how the environment affects this ensemble. Human monoamine oxidase B (MAO-B) catalyzes the oxidation of amines and is inhibited for the treatment of both Parkinson's disease and depression. Despite its clinical importance, its catalytic mechanism remains unclear, and routes to drugging this target would be valuable. Evidence of a radical in either the transition state or the resting state of MAO-B is present throughout the literature and is suggested to be a flavin semiquinone, a tyrosyl radical, or both. Here we see evidence of a resting-state flavin semiquinone, via absorption redox studies and electron paramagnetic resonance, suggesting that the anionic semiquinone is biologically relevant. On the basis of enzyme kinetic studies, enzyme variants, and molecular dynamics simulations, we find evidence for the importance of the membrane environment in mediating the activity of MAO-B and that this mediation is related to the protein dynamics of MAO-B. Further, our MD simulations identify a hitherto undescribed entrance for substrate binding, membrane modulated substrate access, and indications for half-site reactivity: only one active site is accessible to binding at a time. Our study combines both experimental and computational evidence to illustrate the subtle interplay between enzyme activity and protein dynamics and the immediate membrane environment. Understanding key biomedical enzymes to this level of detail will be crucial to inform strategies (and binding sites) for rational drug design for these targets.


Asunto(s)
Membrana Celular/química , Flavina-Adenina Dinucleótido/análogos & derivados , Simulación de Dinámica Molecular , Monoaminooxidasa/química , Sitios de Unión , Dominio Catalítico , Membrana Celular/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/metabolismo , Humanos , Cinética , Monoaminooxidasa/metabolismo , Oxidación-Reducción , Unión Proteica
10.
J Biol Chem ; 293(8): 2829-2840, 2018 02 23.
Artículo en Inglés | MEDLINE | ID: mdl-29301933

RESUMEN

The heterodimeric human (h) electron-transferring flavoprotein (ETF) transfers electrons from at least 13 different flavin dehydrogenases to the mitochondrial respiratory chain through a non-covalently bound FAD cofactor. Here, we describe the discovery of an irreversible and pH-dependent oxidation of the 8α-methyl group to 8-formyl-FAD (8f-FAD), which represents a unique chemical modification of a flavin cofactor in the human flavoproteome. Furthermore, a set of hETF variants revealed that several conserved amino acid residues in the FAD-binding pocket of electron-transferring flavoproteins are required for the conversion to the formyl group. Two of the variants generated in our study, namely αR249C and αT266M, cause glutaric aciduria type II, a severe inherited disease. Both of the variants showed impaired formation of 8f-FAD shedding new light on the potential molecular cause of disease development. Interestingly, the conversion of FAD to 8f-FAD yields a very stable flavin semiquinone that exhibited slightly lower rates of electron transfer in an artificial assay system than hETF containing FAD. In contrast, the formation of 8f-FAD enhanced the affinity to human dimethylglycine dehydrogenase 5-fold, indicating that formation of 8f-FAD modulates the interaction of hETF with client enzymes in the mitochondrial matrix. Thus, we hypothesize that the FAD cofactor bound to hETF is subject to oxidation in the alkaline (pH 8) environment of the mitochondrial matrix, which may modulate electron transport between client dehydrogenases and the respiratory chain. This discovery challenges the current concepts of electron transfer processes in mitochondria.


Asunto(s)
Flavoproteínas Transportadoras de Electrones/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Modelos Moleculares , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Sitios de Unión , Biocatálisis , Dominio Catalítico , Secuencia Conservada , Transporte de Electrón , Flavoproteínas Transportadoras de Electrones/química , Flavoproteínas Transportadoras de Electrones/genética , Flavina-Adenina Dinucleótido/química , Humanos , Concentración de Iones de Hidrógeno , Deficiencia Múltiple de Acil Coenzima A Deshidrogenasa/enzimología , Deficiencia Múltiple de Acil Coenzima A Deshidrogenasa/genética , Mutagénesis Sitio-Dirigida , Mutación , Oxidación-Reducción , Ingeniería de Proteínas , Multimerización de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo
11.
Chembiochem ; 20(13): 1646-1652, 2019 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-30748074

RESUMEN

Fluorescent cofactors like flavins can be exploited to probe their local environment with spatial and temporal resolution. Although the fluorescence properties of the oxidized and two-electron-reduced states of flavins have been studied extensively, this is not the case for the one-electron-reduced state. Both the neutral and anionic semiquinones have proven particularly challenging to examine, as they are unstable in solution and are transient, short-lived species in many catalytic cycles. Here, we report that the nitronate monooxygenase (NMO) from Pseudomonas aeruginosa PAO1 is capable of stabilizing both semiquinone forms anaerobically for hours, thus enabling us to study their spectroscopy in a constant protein environment. We found that in the active site of NMO, the anionic semiquinone exhibits no fluorescence, whereas the neutral semiquinone radical shows a relatively strong fluorescence, with a behavior that violates the Kasha-Vavilov rule. These fluorescence properties are discussed in the context of time-dependent density functional theory calculations, which reveal low-lying dark states in both systems.


Asunto(s)
Mononucleótido de Flavina/química , Flavina-Adenina Dinucleótido/análogos & derivados , Radicales Libres/química , Oxigenasas de Función Mixta/química , Teoría Funcional de la Densidad , Flavina-Adenina Dinucleótido/química , Fluorescencia , Modelos Químicos , Oxidación-Reducción , Pseudomonas aeruginosa/enzimología
12.
Photosynth Res ; 142(2): 127-136, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31302833

RESUMEN

Flavodoxins are small proteins with a non-covalently bound FMN that can accept two electrons and accordingly adopt three redox states: oxidized (quinone), one-electron reduced (semiquinone), and two-electron reduced (quinol). In iron-deficient cyanobacteria and algae, flavodoxin can substitute for ferredoxin as the electron carrier in the photosynthetic electron transport chain. Here, we demonstrate a similar function for flavodoxin from the green sulfur bacterium Chlorobium phaeovibrioides (cp-Fld). The expression of the cp-Fld gene, found in a close proximity with the genes for other proteins associated with iron transport and storage, increased in a low-iron medium. cp-Fld produced in Escherichia coli exhibited the optical, ERP, and electron-nuclear double resonance spectra that were similar to those of known flavodoxins. However, unlike all other flavodoxins, cp-Fld exhibited unprecedented stability of FMN semiquinone to oxidation by air and difference in midpoint redox potentials for the quinone-semiquinone and semiquinone-quinol couples (- 110 and - 530 mV, respectively). cp-Fld could be reduced by pyruvate:ferredoxin oxidoreductase found in the membrane-free extract of Chl. phaeovibrioides cells and photo-reduced by the photosynthetic reaction center found in membrane vesicles from these cells. The green sulfur bacterium Chl. phaeovibrioides appears thus to be a new type of the photosynthetic organisms that can use flavodoxin as an alternative electron carrier to cope with iron deficiency.


Asunto(s)
Chlorobi/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavodoxina/metabolismo , Aire , Chlorobi/genética , Espectroscopía de Resonancia por Spin del Electrón , Electrones , Escherichia coli/metabolismo , Flavina-Adenina Dinucleótido/metabolismo , Oxidación-Reducción , Piruvato-Sintasa/metabolismo
13.
Arch Biochem Biophys ; 673: 108080, 2019 09 30.
Artículo en Inglés | MEDLINE | ID: mdl-31445894

RESUMEN

The electron configuration of flavin cofactors, FMN and FAD, is a critical factor governing the reactivity of NADPH-cytochrome P450 reductase (CPR). The current view of electron transfer by the mammalian CPR, based on equilibrium redox potentials of the flavin cofactors, is that the two electron-reduced FMN hydroquinone (FMNH2), rather than one electron-reduced FMN semiquinone, serves as electron donor to the terminal protein acceptors. However, kinetic and thermodynamic studies on the CPR species originated from different organisms have shown that redox potentials measured at distinct electron transfer steps differ from redox potentials determined by equilibrium titration. Collectively, previous observations suggest that the short-lived transient semiquinone species may carry electrons in diflavin reductases. In this work, we have investigated spectroscopic properties of the CPR-bound FAD and FMN reduced at 77 K by radiolytically-generated thermalized electrons. Using UV-vis spectroscopy, we demonstrated that upon cryo-reduction of oxidized yeast CPR (yCPR) containing an equimolar ratio of both FAD and FMN, or FAD alone, neutral semiquinones were trapped at 77 K. During annealing at the elevated temperatures, unstable short-lived neutral semiquinones relaxed to spectroscopically distinct air-stable neutral semiquinones. This transition was independent of pH within the 6.0-10.7 range. Our data on yeast CPR are in line with the previous observations of others that the flavin short-lived transient semiquinone intermediates may have a role in the electron transfer by CPR at physiological conditions.


Asunto(s)
Flavina-Adenina Dinucleótido/análogos & derivados , NADPH-Ferrihemoproteína Reductasa/metabolismo , Temperatura , Levaduras/enzimología , Mononucleótido de Flavina/metabolismo , Flavina-Adenina Dinucleótido/metabolismo , Glucosa Oxidasa/metabolismo , Cinética , Oxidación-Reducción
14.
Nat Chem Biol ; 13(6): 655-659, 2017 06.
Artículo en Inglés | MEDLINE | ID: mdl-28394885

RESUMEN

The recently realized biochemical phenomenon of energy conservation through electron bifurcation provides biology with an elegant means to maximize utilization of metabolic energy. The mechanism of coordinated coupling of exergonic and endergonic oxidation-reduction reactions by a single enzyme complex has been elucidated through optical and paramagnetic spectroscopic studies revealing unprecedented features. Pairs of electrons are bifurcated over more than 1 volt of electrochemical potential by generating a low-potential, highly energetic, unstable flavin semiquinone and directing electron flow to an iron-sulfur cluster with a highly negative potential to overcome the barrier of the endergonic half reaction. The unprecedented range of thermodynamic driving force that is generated by flavin-based electron bifurcation accounts for unique chemical reactions that are catalyzed by these enzymes.


Asunto(s)
Electrones , Flavina-Adenina Dinucleótido/análogos & derivados , Flavinas/metabolismo , Modelos Biológicos , Sitios de Unión , Transporte de Electrón , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/metabolismo , Flavinas/química
15.
Biochemistry ; 57(40): 5818-5826, 2018 10 09.
Artículo en Inglés | MEDLINE | ID: mdl-30226367

RESUMEN

Formate oxidase (FOX) was previously shown to contain a noncovalently bound 8-formyl FAD (8-fFAD) cofactor. However, both the absorption spectra and the kinetic parameters previously reported for FOX are inconsistent with more recent reports. The ultraviolet-visible (UV-vis) absorption spectrum reported in early studies closely resembles the spectra observed for protein-bound 8-formyl flavin semiquinone species, thus suggesting FOX may be photosensitive. Therefore, the properties of dark and light-exposed FOX were investigated using steady-state kinetics and site-directed mutagenesis analysis along with inductively coupled plasma optical emission spectroscopy, UV-vis absorption spectroscopy, circular dichroism spectroscopy, liquid chromatography and mass spectrometry, and electron paramagnetic resonance (EPR) spectroscopy. Surprisingly, these experimental results demonstrate that FOX is deactivated in the presence of light through generation of an oxygen stable, anionic (red) 8-fFAD semiquinone radical capable of persisting either in an aerobic environment for multiple weeks or in the presence of a strong reducing agent like sodium dithionite. Herein, we study the photoinduced formation of the 8-fFAD semiquinone radical in FOX and report the first EPR spectrum of this radical species. The stability of the 8-fFAD semiquinone radical suggests FOX to be a model enzyme for probing the structural and mechanistic features involved in stabilizing flavin semiquinone radicals. It is likely that the photoinduced formation of a stable 8-fFAD semiquinone radical is a defining characteristic of 8-formyl flavin-dependent enzymes. Additionally, a better understanding of the radical stabilization process may yield a FOX enzyme with more robust activity and broader industrial usefulness.


Asunto(s)
Aspergillus/enzimología , Benzoquinonas/química , Flavina-Adenina Dinucleótido/análogos & derivados , Proteínas Fúngicas/química , Oxidorreductasas/química , Rayos Ultravioleta , Aspergillus/genética , Flavina-Adenina Dinucleótido/química , Proteínas Fúngicas/genética , Mutagénesis Sitio-Dirigida
16.
J Biol Chem ; 292(34): 14039-14049, 2017 08 25.
Artículo en Inglés | MEDLINE | ID: mdl-28615449

RESUMEN

Flavin-based electron transfer bifurcation is emerging as a fundamental and powerful mechanism for conservation and deployment of electrochemical energy in enzymatic systems. In this process, a pair of electrons is acquired at intermediate reduction potential (i.e. intermediate reducing power), and each electron is passed to a different acceptor, one with lower and the other with higher reducing power, leading to "bifurcation." It is believed that a strongly reducing semiquinone species is essential for this process, and it is expected that this species should be kinetically short-lived. We now demonstrate that the presence of a short-lived anionic flavin semiquinone (ASQ) is not sufficient to infer the existence of bifurcating activity, although such a species may be necessary for the process. We have used transient absorption spectroscopy to compare the rates and mechanisms of decay of ASQ generated photochemically in bifurcating NADH-dependent ferredoxin-NADP+ oxidoreductase and the non-bifurcating flavoproteins nitroreductase, NADH oxidase, and flavodoxin. We found that different mechanisms dominate ASQ decay in the different protein environments, producing lifetimes ranging over 2 orders of magnitude. Capacity for electron transfer among redox cofactors versus charge recombination with nearby donors can explain the range of ASQ lifetimes that we observe. Our results support a model wherein efficient electron propagation can explain the short lifetime of the ASQ of bifurcating NADH-dependent ferredoxin-NADP+ oxidoreductase I and can be an indication of capacity for electron bifurcation.


Asunto(s)
Proteínas Bacterianas/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavodoxina/metabolismo , Modelos Moleculares , Complejos Multienzimáticos/metabolismo , NADH NADPH Oxidorreductasas/metabolismo , Nitrorreductasas/metabolismo , Oxidorreductasas/metabolismo , Apoenzimas/química , Apoenzimas/genética , Apoenzimas/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Ácido Benzoico/química , Ácido Benzoico/metabolismo , Biocatálisis , Desulfovibrio vulgaris/enzimología , Transporte de Electrón , Enterobacter cloacae/enzimología , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/metabolismo , Flavodoxina/química , Flavodoxina/genética , Holoenzimas/química , Holoenzimas/genética , Holoenzimas/metabolismo , Complejos Multienzimáticos/química , Complejos Multienzimáticos/genética , NADH NADPH Oxidorreductasas/química , NADH NADPH Oxidorreductasas/genética , Nitrorreductasas/química , Nitrorreductasas/genética , Oxidación-Reducción , Oxidorreductasas/química , Oxidorreductasas/genética , Pyrococcus furiosus/enzimología , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Mutación Silenciosa , Thermus thermophilus/enzimología , ortoaminobenzoatos/química , ortoaminobenzoatos/metabolismo
17.
Mol Microbiol ; 104(5): 837-850, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28295778

RESUMEN

During times of environmental insult, Bacillus subtilis undergoes developmental changes leading to biofilm formation, sporulation and competence. Each of these states is regulated in part by the phosphorylated form of the master response regulator Spo0A (Spo0A∼P). The phosphorylation state of Spo0A is controlled by a multi-component phosphorelay. RicA, RicF and RicT (previously YmcA, YlbF and YaaT) have been shown to be important regulatory proteins for multiple developmental fates. These proteins directly interact and form a stable complex, which has been proposed to accelerate the phosphorelay. Indeed, this complex is sufficient to stimulate the rate of phosphotransfer amongst the phosphorelay proteins in vitro. In this study, we demonstrate that two [4Fe-4S]2+ clusters can be assembled on the complex. As with other iron-sulfur cluster-binding proteins, the complex was also found to bind FAD, hinting that these cofactors may be involved in sensing the cellular redox state. This work provides the first comprehensive characterization of an iron-sulfur protein complex that regulates Spo0A∼P levels. Phylogenetic and genetic evidence suggests that the complex plays a broader role beyond stimulation of the phosphorelay.


Asunto(s)
Bacillus subtilis/metabolismo , Proteínas Bacterianas/metabolismo , Proteínas Hierro-Azufre/metabolismo , Factores de Transcripción/metabolismo , Bacillus subtilis/genética , Proteínas Bacterianas/genética , Cisteína/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Oxidación-Reducción , Fosforilación , Filogenia , Esporas Bacterianas , Factores de Transcripción/genética
18.
Chembiochem ; 19(15): 1609-1612, 2018 08 06.
Artículo en Inglés | MEDLINE | ID: mdl-29776001

RESUMEN

The redox-neutral reaction catalyzed by 2-haloacrylate hydratase (2-HAH) leads to the conversion of 2-chloroacrylate to pyruvate. Previous mechanistic studies demonstrated the formation of a flavin-iminium ion as an important intermediate in the 2-HAH catalytic cycle. Time-resolved flavin absorbance studies were performed in this study, and the data showed that the enzyme is capable of stabilizing both anionic and neutral flavin semiquinone species. The presence of a radical scavenger decreases the activity in a concentration-dependent manner. These data are consistent with the flavin iminium intermediate occurring by radical recombination.


Asunto(s)
Acrilatos/metabolismo , Bacterias/enzimología , Flavinas/metabolismo , Flavoproteínas/metabolismo , Ácido Pirúvico/metabolismo , Bacterias/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , NADP/metabolismo , Oxidación-Reducción
19.
J Biol Chem ; 291(38): 20068-84, 2016 09 16.
Artículo en Inglés | MEDLINE | ID: mdl-27466367

RESUMEN

Violacein is a natural purple pigment of Chromobacterium violaceum with potential medical applications as antimicrobial, antiviral, and anticancer drugs. The initial step of violacein biosynthesis is the oxidative conversion of l-tryptophan into the corresponding α-imine catalyzed by the flavoenzyme l-tryptophan oxidase (VioA). A substrate-related (3-(1H-indol-3-yl)-2-methylpropanoic acid) and a product-related (2-(1H-indol-3-ylmethyl)prop-2-enoic acid) competitive VioA inhibitor was synthesized for subsequent kinetic and x-ray crystallographic investigations. Structures of the binary VioA·FADH2 and of the ternary VioA·FADH2·2-(1H-indol-3-ylmethyl)prop-2-enoic acid complex were resolved. VioA forms a "loosely associated" homodimer as indicated by small-angle x-ray scattering experiments. VioA belongs to the glutathione reductase family 2 of FAD-dependent oxidoreductases according to the structurally conserved cofactor binding domain. The substrate-binding domain of VioA is mainly responsible for the specific recognition of l-tryptophan. Other canonical amino acids were efficiently discriminated with a minor conversion of l-phenylalanine. Furthermore, 7-aza-tryptophan, 1-methyl-tryptophan, 5-methyl-tryptophan, and 5-fluoro-tryptophan were efficient substrates of VioA. The ternary product-related VioA structure indicated involvement of protein domain movement during enzyme catalysis. Extensive structure-based mutagenesis in combination with enzyme kinetics (using l-tryptophan and substrate analogs) identified Arg(64), Lys(269), and Tyr(309) as key catalytic residues of VioA. An increased enzyme activity of protein variant H163A in the presence of l-phenylalanine indicated a functional role of His(163) in substrate binding. The combined structural and mutational analyses lead to the detailed understanding of VioA substrate recognition. Related strategies for the in vivo synthesis of novel violacein derivatives are discussed.


Asunto(s)
Proteínas Bacterianas , Chromobacterium , Indoles/metabolismo , Triptófano Oxigenasa , Triptófano , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Chromobacterium/química , Chromobacterium/genética , Chromobacterium/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/genética , Flavina-Adenina Dinucleótido/metabolismo , Cinética , Dominios Proteicos , Relación Estructura-Actividad , Triptófano/química , Triptófano/genética , Triptófano/metabolismo , Triptófano Oxigenasa/química , Triptófano Oxigenasa/genética , Triptófano Oxigenasa/metabolismo
20.
J Am Chem Soc ; 139(33): 11313-11316, 2017 08 23.
Artículo en Inglés | MEDLINE | ID: mdl-28780870

RESUMEN

Flavin has long been known to function as a single electron reductant in biological settings, but this reactivity has rarely been observed with flavoproteins used in organic synthesis. Here we describe the discovery of an enantioselective radical dehalogenation pathway for α-bromoesters using flavin-dependent 'ene'-reductases. Mechanistic experiments support the role of flavin hydroquinone as a single electron reductant, flavin semiquinone as the hydrogen atom source, and the enzyme as the source of chirality.


Asunto(s)
Flavinas/metabolismo , Gluconobacter oxydans/enzimología , Hidrógeno/metabolismo , Oxidorreductasas/metabolismo , Transporte de Electrón , Ésteres/metabolismo , Flavina-Adenina Dinucleótido/análogos & derivados , Flavina-Adenina Dinucleótido/metabolismo , Gluconobacter oxydans/metabolismo , Halogenación , Modelos Moleculares , NADP/metabolismo , Oxidación-Reducción , Estereoisomerismo
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