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1.
Blood ; 137(21): 2935-2946, 2021 05 27.
Artículo en Inglés | MEDLINE | ID: mdl-33211804

RESUMEN

B-cell receptor (BCR) signaling is crucial for chronic lymphocytic leukemia (CLL) biology. IGLV3-21-expressing B cells may acquire a single point mutation (R110) that triggers autonomous BCR signaling, conferring aggressive behavior. Epigenetic studies have defined 3 CLL subtypes based on methylation signatures reminiscent of naïve-like (n-CLL), intermediate (i-CLL), and memory-like (m-CLL) B cells with different biological features. i-CLL carries a borderline IGHV mutational load and significantly higher use of IGHV3-21/IGLV3-21. To determine the clinical and biological features of IGLV3-21R110 CLL and its relationship to these epigenetic subtypes, we characterized the immunoglobulin gene of 584 CLL cases using whole-genome/exome and RNA sequencing. IGLV3-21R110 was detected in 6.5% of cases: 30 (38%) of 79 i-CLLs, 5 (1.7%) of 291 m-CLLs, and 1 (0.5%) of 189 n-CLLs. All stereotype subset 2 cases carried IGLV3-21R110, whereas 62% of IGLV3-21R110 i-CLL cases had nonstereotyped BCR immunoglobulins. IGLV3-21R110 i-CLL had a significantly higher number of SF3B1 and ATM mutations and total number of driver alterations. However, the R110 mutation was the sole alteration in 1 i-CLL and was accompanied only by del(13q) in 3. Although IGHV mutational status varied, IGLV3-21R110 i-CLL transcriptomically resembled n-CLL/unmutated IGHV CLL with a specific signature including WNT5A/B overexpression. In contrast, i-CLL lacking IGLV3-21R110 mirrored m-CLL/mutated IGHV. Patients with IGLV3-21R110 i-CLL had a short time to first treatment and overall survival similar to those of n-CLL/unmutated IGHV patients, whereas patients with non-IGLV3-21R110 i-CLL had a good prognosis similar to that of patients with m-CLL/mutated IGHV. IGLV3-21R110 defines a CLL subgroup with specific biological features and an unfavorable prognosis independent of IGHV mutational status and epigenetic subtype.


Asunto(s)
Metilación de ADN , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Leucemia Linfocítica Crónica de Células B/genética , Mutación Puntual , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Linfocitos B/química , Femenino , Humanos , Leucemia Linfocítica Crónica de Células B/clasificación , Leucemia Linfocítica Crónica de Células B/patología , Masculino , Persona de Mediana Edad , Mutación , Adulto Joven
2.
J Gen Virol ; 102(7)2021 07.
Artículo en Inglés | MEDLINE | ID: mdl-34280085

RESUMEN

Pigs are susceptible to foot-and-mouth disease virus (FMDV), and the humoral immune response plays an essential role in protection against FMDV infection. However, little information is available about FMDV-specific mAbs derived from single B cells of pigs. This study aimed to determine the antigenic features of FMDV that are recognized by antibodies from pigs. Therefore, a panel of pig-derived mAbs against FMDV were developed using fluorescence-based single B cell antibody technology. Western blotting revealed that three of the antibodies (1C6, P2-7E and P2-8G) recognized conserved antigen epitopes on capsid protein VP2, and exhibited broad reactivity against both FMDV serotypes A and O. An alanine-substitution scanning assay and sequence conservation analysis elucidated that these porcine mAbs recognized two conserved epitopes on VP2: a linear epitope (2KKTEETTLL10) in the N terminus and a conformational epitope involving residues K63, H65, L66, F67, D68 and L81 on two ß-sheets (B-sheet and C-sheet) that depended on the integrity of VP2. Random parings of heavy and light chains of the IgGs confirmed that the heavy chain is predominantly involved in binding to antigen. The light chain of porcine IgG contributes to the binding affinity toward an antigen and may function as a support platform for antibody stability. In summary, this study is the first to reveal the conserved antigenic profile of FMDV recognized by porcine B cells and provides a novel method for analysing the antibody response against FMDV in its natural hosts (i.e. pigs) at the clonal level.


Asunto(s)
Anticuerpos Monoclonales/inmunología , Anticuerpos Antivirales/inmunología , Proteínas de la Cápside/inmunología , Virus de la Fiebre Aftosa/inmunología , Porcinos/inmunología , Animales , Anticuerpos Monoclonales/aislamiento & purificación , Anticuerpos Antivirales/aislamiento & purificación , Afinidad de Anticuerpos , Antígenos Virales/inmunología , Linfocitos B/inmunología , Proteínas de la Cápside/química , Mapeo Epitopo , Epítopos/inmunología , Virus de la Fiebre Aftosa/clasificación , Genes de las Cadenas Pesadas de las Inmunoglobulinas , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Inmunoglobulina G/inmunología , Cadenas Pesadas de Inmunoglobulina/inmunología , Cadenas Ligeras de Inmunoglobulina/inmunología , Serogrupo
3.
Nat Immunol ; 9(6): 623-31, 2008 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-18488031

RESUMEN

Although the essential role of the adaptor protein SLP-65 in pre-B cell differentiation is established, the molecular mechanism underlying its function is poorly understood. In this study, we uncover a link between SLP-65-dependent signaling and the phosphoinositide-3-OH kinase (PI(3)K)-protein kinase B (PKB)-Foxo pathway. We show that the forkhead box transcription factor Foxo3a promotes light chain rearrangement in pre-B cells. Our data suggest that PKB suppresses light chain recombination by phosphorylating Foxo proteins, whereas reconstitution of SLP-65 function counteracts PKB activation and promotes Foxo3a and Foxo1 activity in pre-B cells. Together, these data illuminate a molecular function of SLP-65 and identify a key role for Foxo proteins in the regulation of light chain recombination, receptor editing and B cell selection.


Asunto(s)
Proteínas Adaptadoras Transductoras de Señales/fisiología , Linfocitos B/inmunología , Factores de Transcripción Forkhead/metabolismo , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Proteínas Tirosina Quinasas/metabolismo , Linfocitos B/citología , Linfocitos B/efectos de los fármacos , Factores de Transcripción Forkhead/química , Factores de Transcripción Forkhead/genética , Humanos , Fosfatidilinositol 3-Quinasas/metabolismo , Recombinación Genética
4.
Br J Haematol ; 185(2): 261-265, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30681735

RESUMEN

Identification of clonal IGH, IGK and IGL gene rearrangements offers diagnostic adjunct in suspected B-cell neoplasms. However, many centres omit IGL analysis as its value is uncertain. A review of 567 cases with IGH, IGK and IGL rearrangement assessed using BIOMED-2 assays showed clonal immunoglobulin gene rearrangement in 54% of cases, of which 24% had a clonal IGL rearrangement. In two cases, the clonal rearrangement was detected exclusively by IGL analysis. This finding demonstrates the added value of IGL analysis for clonality assessment, especially in suspected B-cell neoplasms in which a clonal IGH and/or IGK rearrangement is not detected or is equivocal.


Asunto(s)
Reordenamiento Génico de Cadena Ligera de Linfocito B , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Cadenas lambda de Inmunoglobulina/genética , Linfoma de Células B/diagnóstico , Linfoma de Células B/genética , Anciano , Femenino , Genes Relacionados con las Neoplasias , Humanos , Cadenas Pesadas de Inmunoglobulina/genética , Cadenas kappa de Inmunoglobulina/genética , Linfoma de Células B/patología , Clasificación del Tumor , Células Madre Neoplásicas/patología , Reacción en Cadena de la Polimerasa/métodos
5.
Zhonghua Bing Li Xue Za Zhi ; 47(6): 423-426, 2018 Jun 08.
Artículo en Zh | MEDLINE | ID: mdl-29886585

RESUMEN

Objective: To evaluate the application of FISH testing of bcl-2/IgH gene translocation and IgH/L gene rearrangement in different stages of follicular lymphoma. Methods: In 32 follicular lymphoma cases, which were collected at Guangdong General Hospital from September 2014 to December 2016, the bcl-2/IgH gene ectopic state was detected by FISH while the IgH/L gene rearrangement was tested using PCR-GeneScan to analyze the relationship between bcl-2/IgH gene translocation, different stages of follicular lymphoma and clonal immunoglobulin (IgH/L) gene rearrangements. Results: From the paraffin sections of all 32 follicular lymphomas, 17 cases showed bcl-2/IgH gene translocation, and the percentages of FL1, FL2 and FL3 translocation were 12/13, 3/5 and 2/14, respectively. Among the 24 cases of IgH/L gene arrangements identified from the total sample, the occurrence rates of FL1, FL2 and FL3 gene arrangement were 7/13, 4/5 and 13/14, respectively. Spearman's rank correlation analysis and χ(2) analysis showed that bcl-2/IgH gene translocation was negatively correlated with follicular lymphoma stage and the association was statistically significant. In more advanced stages of follicular lymphoma, the occurrence of bcl-2/IgH gene translocation tended to decrease with distinct FL1, FL2 and Fl3 gene expression (P<0.05). As IgH/L gene rearrangement in FL3 was higher than that in FL1 and FL2, its detection may be complimentary to FISH test for bcl-2/IgH gene translocation in diagnosing follicular lymphoma. Conclusions: The combined use of FISH and PCR-GeneScan increases the positive rate of follicular lymphoma diagnosis, and this combination is more sensitive than FISH or clonal analysis only to detect the chromosomal abnormality or the gene rearrangement.


Asunto(s)
Reordenamiento Génico , Genes de Inmunoglobulinas/genética , Linfoma Folicular/genética , Translocación Genética , Aberraciones Cromosómicas , Genes de las Cadenas Pesadas de las Inmunoglobulinas/genética , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Humanos , Proteínas de Fusión Oncogénica/genética , Reacción en Cadena de la Polimerasa
6.
Genes Immun ; 16(1): 24-34, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25338678

RESUMEN

Germline variation at immunoglobulin (IG) loci is critical for pathogen-mediated immunity, but establishing complete haplotype sequences in these regions has been problematic because of complex sequence architecture and diploid source DNA. We sequenced BAC clones from the effectively haploid human hydatidiform mole cell line, CHM1htert, across the light chain IG loci, kappa (IGK) and lambda (IGL), creating single haplotype representations of these regions. The IGL haplotype generated here is 1.25 Mb of contiguous sequence, including four novel IGLV alleles, one novel IGLC allele, and an 11.9-kb insertion. The CH17 IGK haplotype consists of two 644 kb proximal and 466 kb distal contigs separated by a large gap of unknown size; these assemblies added 49 kb of unique sequence extending into this gap. Our analysis also resulted in the characterization of seven novel IGKV alleles and a 16.7-kb region exhibiting signatures of interlocus sequence exchange between distal and proximal IGKV gene clusters. Genetic diversity in IGK/IGL was compared with that of the IG heavy chain (IGH) locus within the same haploid genome, revealing threefold (IGK) and sixfold (IGL) higher diversity in the IGH locus, potentially associated with increased levels of segmental duplication and the telomeric location of IGH.


Asunto(s)
Genes de las Cadenas Ligeras de las Inmunoglobulinas , Mola Hidatiforme/genética , Línea Celular Tumoral , Cromosomas Artificiales Bacterianos , Femenino , Genes de las Cadenas Pesadas de las Inmunoglobulinas , Humanos , Datos de Secuencia Molecular , Polimorfismo de Nucleótido Simple , Embarazo
7.
J Immunol ; 191(4): 1556-66, 2013 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-23836058

RESUMEN

Secondary B cell repertoire diversification occurs by somatic hypermutation (SHM) in germinal centers following Ag stimulation. In SHM, activation-induced cytidine deaminase mutates the V region of the Ig genes to increase the affinity of Abs. Although SHM acts primarily at Ig loci, low levels of off-target mutation can result in oncogenic DNA damage, illustrating the importance of understanding SHM targeting mechanisms. A candidate targeting motif is the E box, a short DNA sequence (CANNTG) found abundantly in the genome and in many SHM target genes. Using a reporter assay in chicken DT40 B cells, we previously identified a 1928-bp portion of the chicken IgL locus capable of supporting robust SHM. In this article, we demonstrate that mutation of all 20 E boxes in this fragment reduces SHM targeting activity by 90%, and that mutation of subsets of E boxes reveals a functional hierarchy in which E boxes within "core" targeting regions are of greatest importance. Strikingly, when the sequence and spacing of the 20 E boxes are preserved but surrounding sequences are altered, SHM targeting activity is eliminated. Hence, although E boxes are vital SHM targeting elements, their function is completely dependent on their surrounding sequence context. These results suggest an intimate cooperation between E boxes and other sequence motifs in SHM targeting to Ig loci and perhaps also in restricting mistargeting to certain non-Ig loci.


Asunto(s)
Linfocitos B/metabolismo , Elementos E-Box/genética , Hipermutación Somática de Inmunoglobulina/genética , Animales , Sitios de Unión , Células Cultivadas , Pollos , Citidina Desaminasa/fisiología , ADN Recombinante/genética , Elementos de Facilitación Genéticos/genética , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Genes Reporteros , Proteínas Fluorescentes Verdes/análisis , Proteínas Fluorescentes Verdes/genética , Región Variable de Inmunoglobulina/genética , Mutación , Unión Proteica , Factor de Transcripción 3/metabolismo , Transfección , Transgenes
8.
BMC Immunol ; 15: 51, 2014 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-25359572

RESUMEN

BACKGROUND: The naïve antibody repertoire is initially dependent upon the number of germline V(D)J genes and the ability of recombined heavy and light chains to pair. Individual VH and VL genes are not equally represented in naïve mature B cells, suggesting that positive and negative selection also shape the antibody repertoire. Among the three member murine Vκ10 L chain family, the Vκ10C gene is under-represented in the antibody repertoire. Although it is structurally functional and accessible to both transcriptional and recombination machinery, the Vκ10C promoter is inefficient in pre-B cell lines and productive Vκ10C rearrangements are lost as development progresses from pre-B cells through mature B cells. This study examined VH/Vκ10 pairing, promoter mutations, Vκ10 transcript levels and receptor editing as possible factors that are responsible for loss of productive Vκ10C rearrangements in developing B cells. RESULTS: We demonstrate that the loss of Vκ10C expression is not due to an inability to pair with H chains, but is likely due to a combination of other factors. Levels of mRNA are low in sorted pre-B cells and undetectable in B cells. Mutation of a single base in the three prime region of the Vκ10C promoter increases Vκ10C promoter function in pre-B cell lines. Pre-B and B cells harbor disproportionate levels of receptor-edited productive Vκ10C rearrangements. CONCLUSIONS: Our findings suggest that the weak Vκ10C promoter initially limits the amount of available Vκ10C L chain for pairing with H chains, resulting in sub-threshold levels of cell surface B cell receptors, insufficient tonic signaling and subsequent receptor editing to limit the numbers of Vκ10C-expressing B cells emigrating from the bone marrow to the periphery.


Asunto(s)
Anticuerpos/genética , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Animales , Secuencia de Bases , Femenino , Reordenamiento Génico de Cadena Ligera de Linfocito B , Cadenas Pesadas de Inmunoglobulina/genética , Masculino , Ratones Endogámicos BALB C , Datos de Secuencia Molecular , Células Precursoras de Linfocitos B/metabolismo , Regiones Promotoras Genéticas/genética , Receptores de Antígenos de Linfocitos B/metabolismo , Recombinación Genética/genética
9.
Immunogenetics ; 66(7-8): 507-11, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24934119

RESUMEN

Swine, unlike other artiodactyls, but similar to humans, utilize both lambda and kappa light chain isotypes almost equally in the generation of their antibody repertoire. The porcine antibody light chain loci have previously been characterized in a single Duroc sow in which was seen extensive allelic variation between light chain genes on homologous chromosomes. However, the extent of variation between individuals is completely unknown. Using deep sequencing of cDNA-derived amplicons from five pigs, we report the identification and characterization of an IGLV gene that is functional and highly expressed in some animals, yet completely absent in others. Our findings provide a possible rationale for the known individual-to-individual variation in antibody responses to vaccination, infectious challenge, and subsequent disease outcome.


Asunto(s)
Genes de las Cadenas Ligeras de las Inmunoglobulinas , Sus scrofa/genética , Sus scrofa/inmunología , Alelos , Secuencia de Aminoácidos , Animales , Secuencia de Bases , ADN Complementario/genética , Femenino , Secuenciación de Nucleótidos de Alto Rendimiento , Fenómenos Inmunogenéticos , Región Variable de Inmunoglobulina/genética , Datos de Secuencia Molecular , Polimorfismo Genético , Homología de Secuencia de Aminoácido , Exones VDJ
10.
Blood ; 119(9): 2110-3, 2012 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-22234685

RESUMEN

MicroRNAs (miRNAs) play a key role in chronic lymphocytic leukemia as well as in normal B cells. Notably, miRNA gene encoding miR-650 and its homologs overlap with several variable (V) subgenes coding for lambda immunoglobulin (IgLλ). Recent studies describe the role of miR-650 in solid tumors, but its role in chronic lymphocytic leukemia (CLL) has not yet been studied. Our experiments demonstrate that miR-650 expression is regulated by coupled expression with its host gene for IgLλ. This coupling provides a unique yet unobserved mechanism for microRNA gene regulation. We determine that higher expression of miR-650 is associated with a favorable CLL prognosis and influences the proliferation capacity of B cells. We also establish that in B cells, miR-650 targets proteins important in cell proliferation and survival: cyclin dependent kinase 1 (CDK1), inhibitor of growth 4 (ING4), and early B-cell factor 3 (EBF3). This study underscores the importance of miR-650 in CLL biology and normal B-cell physiology.


Asunto(s)
Regulación de la Expresión Génica , Reordenamiento Génico , Genes de Inmunoglobulinas , Leucemia Linfocítica Crónica de Células B/genética , MicroARNs/genética , Adulto , Anciano , Anciano de 80 o más Años , Ciclo Celular/genética , Línea Celular Tumoral , Femenino , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Humanos , Leucemia Linfocítica Crónica de Células B/mortalidad , Masculino , Persona de Mediana Edad , Estadificación de Neoplasias , Pronóstico
11.
Can J Microbiol ; 60(11): 737-43, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25322256

RESUMEN

The staphylococcal enterotoxins (SEs) are potent gastrointestinal exotoxins synthesized by Staphylococcus aureus, which is responsible for various diseases including septicemia, food poisoning, and toxic shock syndrome, as well as bovine mastitis. Among them, staphylococcal enterotoxin A (SEA) is one of the most commonly present serotypes in staphylococcal food poisoning cases. In this study, the stable hybridoma 3C12 producing anti-SEA monoclonal antibody was established with an equilibrium dissociation constant (KD) of 1.48 × 10(-8) mol·L(-1), its ScFv-coding genes were obtained and then the anti-SEA single chain variable fragment (ScFv) protein was expressed in Escherichia coli. Characterization of the expressed target ScFv protein was analyzed by sodium dodecyl sulfate - polyacrylamide gel electrophoresis, Western blot, and enzyme-linked immunosorbent assay. The results demonstrated that the recombinant anti-SEA ScFv protein retained a specific binding activity for SEA, and the KD value of the soluble ScFv was about 3.75 × 10(-7) mol·L(-1). The overall yield of bioactive anti-SEA ScFv in E. coli flask culture was more than 10 mg·L(-1).


Asunto(s)
Enterotoxinas/inmunología , Escherichia coli/genética , Anticuerpos de Cadena Única/inmunología , Staphylococcus aureus/inmunología , Secuencia de Aminoácidos , Afinidad de Anticuerpos , Especificidad de Anticuerpos , Secuencia de Bases , Western Blotting , Electroforesis en Gel de Poliacrilamida , Ensayo de Inmunoadsorción Enzimática , Genes de las Cadenas Pesadas de las Inmunoglobulinas , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Hibridomas , Datos de Secuencia Molecular , Proteínas Recombinantes/inmunología , Anticuerpos de Cadena Única/biosíntesis , Anticuerpos de Cadena Única/química , Anticuerpos de Cadena Única/genética
12.
Immunogenetics ; 65(5): 387-96, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23417322

RESUMEN

The gene segments encoding antibodies have been studied in many capacities and represent some of the best-characterized gene families in traditional animal disease models (mice and humans). To date, multiple immunoglobulin light chain (IgL) isotypes have been found in vertebrates and it is unclear as to which isotypes might be more primordial in nature. Sequence data emerging from an array of fish genome projects is a valuable resource for discerning complex multigene assemblages in this critical branch point of vertebrate phylogeny. Herein, we have analyzed the genomic organization of medaka (Oryzias latipes) IgL gene segments based on recently released genome data. The medaka IgL locus located on chromosome 11 contains at least three clusters of IgL gene segments comprised of multiple gene assemblages of the kappa light chain isotype. These data suggest that medaka IgL gene segments may undergo both intra- and inter-cluster rearrangements as a means to generate additional diversity. Alignments of expressed sequence tags to concordant gene segments which revealed each of the three IgL clusters are expressed. Collectively, these data provide a genomic framework for IgL genes in medaka and indicate that Ig diversity in this species is achieved from at least three distinct chromosomal regions.


Asunto(s)
Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Variación Genética , Oryzias/genética , Secuencia de Aminoácidos , Animales , Genes de las Cadenas Ligeras de las Inmunoglobulinas/inmunología , Genoma , Datos de Secuencia Molecular , Oryzias/inmunología , Filogenia , Homología de Secuencia de Aminoácido
13.
Histopathology ; 63(3): 418-24, 2013 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23795946

RESUMEN

AIMS: To assess how hybridization probe design may affect MYC status determination in Burkitt lymphoma and diffuse large B-cell lymphoma. METHODS AND RESULTS: We compared the results obtained with one dual-fusion and two break-apart commercial probes in a retrospective series of 91 aggressive B-cell lymphomas. All three probes were able to detect the IGH-MYC translocation in every case bearing it (13/13). However, seven of 13 (54%) non-IGH-MYC (light-chain immunoglobulin or non-immunoglobulin-MYC) rearrangements were unambiguously detected by just one of the probes tested. On the other hand, when the IGH-MYC dual-fusion probe was used, nine of 15 (60%) cases with a hybridization pattern suggestive of a non-IGH-MYC translocation were attributable to MYC copy gain rather than MYC rearrangement, as demonstrated by both break-apart probes. CONCLUSIONS: Taking into account the prognostic and therapeutic implications of the MYC translocation, probe design and limitations should be particularly kept in mind when MYC hybridization patterns are interpreted. In our experience, detection of 8q24 abnormalities could be optimized by a two-probe approach involving the application of both IGH-MYC dual-fusion and MYC break-apart selected kits.


Asunto(s)
Linfoma de Burkitt/genética , Linfoma de Burkitt/patología , Genes myc , Linfoma de Células B Grandes Difuso/genética , Linfoma de Células B Grandes Difuso/patología , Sondas de Ácido Nucleico/genética , Adulto , Anciano , Anciano de 80 o más Años , Reordenamiento Génico , Genes de las Cadenas Pesadas de las Inmunoglobulinas , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Humanos , Hibridación Fluorescente in Situ , Persona de Mediana Edad , Estudios Retrospectivos , Adulto Joven
14.
J Exp Med ; 203(13): 2919-28, 2006 Dec 25.
Artículo en Inglés | MEDLINE | ID: mdl-17178919

RESUMEN

It is thought that gene conversion (GCV) and somatic hypermutation (SHM) of immunoglobulin (Ig) genes occur in two steps: the generation of uracils in DNA by activation-induced cytidine deaminase, followed by their subsequent repair by various DNA repair pathways to generate sequence-diversified products. It is not known how either of the two steps is targeted specifically to Ig loci. Because of the tight link between transcription and SHM, we have investigated the role of endogenous Ig light chain (IgL) transcriptional control elements in GCV/SHM in the chicken B cell line DT40. Promoter substitution experiments led to identification of a strong RNA polymerase II promoter incapable of supporting efficient GCV/SHM. This surprising finding indicates that high levels of transcription are not sufficient for robust GCV/SHM in Ig loci. Deletion of the IgL enhancer in a context in which high-level transcription was not compromised showed that the enhancer is not necessary for GCV/SHM. Our results indicate that cis-acting elements are important for Ig gene diversification, and we propose that targeting specificity is achieved through the combined action of several Ig locus elements that include the promoter.


Asunto(s)
Elementos de Facilitación Genéticos/genética , Conversión Génica/genética , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Regiones Promotoras Genéticas/genética , Hipermutación Somática de Inmunoglobulina/genética , Actinas/genética , Animales , Linfocitos B/metabolismo , Bacteriófago T7/genética , Línea Celular Tumoral , Citidina Desaminasa/genética , Eliminación de Gen , Expresión Génica , Cadenas Pesadas de Inmunoglobulina/genética , Inmunoglobulina M/genética , Mutación , Factor 1 de Elongación Peptídica/genética , Receptores de Antígenos de Linfocitos B/genética , Transcripción Genética , Transfección
15.
Anim Genet ; 43(6): 776-80, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22497300

RESUMEN

A comparative transcription analysis of Ig κ-light chains (IGK) of the cattle breeds Holstein Friesian (HF), German Black Pied (GBP), German Simmental (GS) and Aubrac (A) revealed three alleles coding for two putative allotypic variants of IGKC. The amino acid residues p.Asp100Asn and p.Thr116Ala were located at the outer edge of the constant domain as demonstrated by homology-based modelling. Alleles were distributed in unequal frequencies within the breeds examined. While cattle breeds HF, GS, and A possessed all alleles and allotypic variants, GBP exhibited alleles encoding allotypic variant IGKC(a) . All three IGKJ segments were detected in 320 sequences analysed. IGKJ1 was combined predominantly with IGKC. The ORF2 of IGKJ2 was detected for the first time on transcriptional level.


Asunto(s)
Bovinos/inmunología , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Cadenas kappa de Inmunoglobulina/química , Cadenas kappa de Inmunoglobulina/genética , Alelos , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Bovinos/clasificación , Bovinos/genética , Regiones Constantes de Inmunoglobulina/química , Regiones Constantes de Inmunoglobulina/genética , Región de Unión de la Inmunoglobulina/química , Región de Unión de la Inmunoglobulina/genética , Transcripción Genética
16.
PLoS Genet ; 5(1): e1000332, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19132090

RESUMEN

Hypermutation of the immunoglobulin (Ig) genes requires Activation Induced cytidine Deaminase (AID) and transcription, but it remains unclear why other transcribed genes of B cells do not mutate. We describe a reporter transgene crippled by hypermutation when inserted into or near the Ig light chain (IgL) locus of the DT40 B cell line yet stably expressed when inserted into other chromosomal positions. Step-wise deletions of the IgL locus revealed that a sequence extending for 9.8 kilobases downstream of the IgL transcription start site confers the hypermutation activity. This sequence, named DIVAC for diversification activator, efficiently activates hypermutation when inserted at non-Ig loci. The results significantly extend previously reported findings on AID-mediated gene diversification. They show by both deletion and insertion analyses that cis-acting sequences predispose neighboring transcription units to hypermutation.


Asunto(s)
Citidina Desaminasa/metabolismo , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Secuencias Reguladoras de Ácidos Nucleicos , Hipermutación Somática de Inmunoglobulina , Animales , Linfocitos B , Pollos , Mapeo Cromosómico , Citometría de Flujo , Eliminación de Gen , Regulación de la Expresión Génica , Genes Reporteros , Variación Genética , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Mutación , Análisis de Secuencia de ADN , Transfección
17.
Immunology ; 132(2): 240-55, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21070232

RESUMEN

In mammals, somatic hypermutation (SHM) of immunoglobulin (Ig) genes is critical for the generation of high-affinity antibodies and effective immune responses. Knowledge of sequence-specific biases in the targeting of somatic mutations can be useful for studies aimed at understanding antibody repertoires produced in response to infections, B-cell neoplasms, or autoimmune disease. To evaluate potential nucleotide targets of somatic mutation in zebrafish (Danio rerio), an enriched IgL cDNA library was constructed and > 250 randomly selected clones were sequenced and analysed. In total, 55 unique VJ-C sequences were identified encoding a total of 125 mutations. Mutations were most prevalent in V(L) with a bias towards single base transitions and increased mutation in the complementarity-determining regions (CDRs). Overall, mutations were overrepresented at WRCH/DGYW motifs suggestive of activation-induced cytidine deaminase (AID) targeting which is common in mice and humans. In contrast to mammalian models, N and P addition was not observed and mutations at AID hotspots were largely restricted to palindromic WRCH/DGYW motifs. Mutability indexes for di- and trinucleotide combinations confirmed C/G targets within WRCH/DGYW motifs to be statistically significant mutational hotspots and showed trinucleotides ATC and ATG to be mutation coldspots. Additive mutations in VJ-C sequences revealed patterns of clonal expansion consistent with affinity maturation responses seen in higher vertebrates. Taken together, the data reveal specific nucleotide targets of SHM in zebrafish and suggest that AID and affinity maturation contribute to antibody diversification in this emerging immunological model.


Asunto(s)
Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Cadenas Ligeras de Inmunoglobulina/genética , Hipermutación Somática de Inmunoglobulina/genética , Pez Cebra/genética , Pez Cebra/inmunología , Secuencias de Aminoácidos , Animales , Citidina/metabolismo , Citidina Desaminasa/metabolismo , Biblioteca de Genes , Modelos Inmunológicos , Datos de Secuencia Molecular , Mutación , Análisis de Secuencia de ADN , Pez Cebra/metabolismo
18.
Mol Biol Evol ; 27(1): 113-20, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19744999

RESUMEN

All jawed vertebrates produce immunoglobulins (IGs) as a defense mechanism against pathogens. Typically, IGs are composed of two identical heavy chains (IGH) and two identical light chains (IGL). Most tetrapod species encode more than one isotype of light chains. Chicken is the only representative of birds for which genomic information is currently available and is an exception to the above rule because it encodes only a single IGL isotype (i.e., lambda). Here, we show that the genome of zebra finch, another bird species, encodes a single IGL isotype, that is, lambda, like the chicken. These results strongly suggest that the second isotype (i.e., kappa) present in both reptiles and mammals was lost in a very early stage of bird evolution. Furthermore, we show that both chicken and zebra finch contain a single set of functional variable, joining, and constant region genes and multiple variable region pseudogenes. The latter finding suggests that this type of genomic organization was already present in the common ancestor of these bird species and remained unchanged over a long evolutionary time. This conservation is in contrast with the high levels of variation observed in the mammalian IGL loci. The presence of a single functional variable region gene followed by multiple variable pseudogenes in zebra finch suggest that this species may be generating antibody diversity by a gene conversion-like mechanism like the chicken.


Asunto(s)
Evolución Molecular , Pinzones/genética , Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Secuencia de Aminoácidos , Animales , Diversidad de Anticuerpos , Pollos , Conversión Génica , Marcadores Genéticos , Mamíferos , Modelos Genéticos , Modelos Moleculares , Datos de Secuencia Molecular , Alineación de Secuencia
19.
Fish Shellfish Immunol ; 31(5): 697-703, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-20933599

RESUMEN

Genomic organization, composition, and microsynteny of immunoglobulin light chain (IgL) gene segments in the zebrafish were analyzed through the identification and annotation of overlapping BAC clone insert sequences and an Illumina de novo assembly. The resultant gap-free IgL annotation confirmed a number of previous conclusions about teleost IgL including: suites of (V(L)-J(L)-C(L)) clusters on multiple chromosomes; V(L) in the same or opposite transcriptional orientation as J(L) and C(L); and the apparent absence of lambda IgL in the zebrafish model. In addition, palindromic heptamers (CACAGTG or CACTGTG) within the 3' region of zebrafish C(L) were identified. In mammals, heptamers within J(κ)-C(κ) introns can recombine with downstream kappa deleting elements (Kde) to ablate C(κ) regions prior to rearrangements of V(λ)-J(λ) gene segments. The presence of palindromic heptamers within zebrafish C(L) is intriguing as their recombination with intact RSS might result in the deletion of a large portion of the C(L) thereby permanently silencing C(L) exons within the IgL locus. Given that bony fish have appreciably more C(L) spread over more chromosomes than mice and humans, it is plausible the presence of recombining sequences within C(L) may be tied to a need for heightened mechanisms to facilitate allelic exclusion or receptor editing. Collectively, with this report, gap-free annotations of the heavy and light chain Ig loci have now been completed for Danio rerio, the only teleost for which this has been accomplished, thereby strengthening the overall utility of zebrafish as a model organism for both comparative immunology and biomedical research.


Asunto(s)
Genes de las Cadenas Ligeras de las Inmunoglobulinas/genética , Regiones Constantes de Inmunoglobulina/genética , Anotación de Secuencia Molecular , Pez Cebra/genética , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Cromosomas Artificiales Bacterianos/genética , Células Clonales , Orden Génico , Regiones Constantes de Inmunoglobulina/química , Datos de Secuencia Molecular , Alineación de Secuencia
20.
J Immunol ; 182(3): 1362-9, 2009 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-19155482

RESUMEN

Ag receptor loci poised for V(D)J rearrangement undergo germline transcription (GT) of unrearranged genes, and the accessible gene segments are associated with posttranslational modifications (PTM) on histones. In this study, we performed a comprehensive analysis of the dynamic changes of four PTM throughout B and T cell differentiation in freshly isolated ex vivo cells. Methylation of lysines 4 and 79 of histone H3, and acetylation of H3, demonstrated stage and lineage specificity, and were most pronounced at the J segments of loci poised for, or undergoing, rearrangement, except for dimethylation of H3K4, which was more equally distributed on V, D, and J genes. Focusing on the IgL loci, we demonstrated there are no active PTM in the absence of pre-BCR signaling. The kappa locus GT and PTM on Jkappa genes are rapidly induced following pre-BCR signaling in large pre-B cells. In contrast, the lambda locus shows greatly delayed onset of GT and PTM, which do not reach high levels until the immature B cell compartment, the stage at which receptor editing is initiated. Analysis of MiEkappa(-/-) mice shows that this enhancer plays a key role in inducing not only GT, but PTM. Using an inducible pre-B cell line, we demonstrate that active PTM on Jkappa genes occur after GT is initiated, indicating that histone PTM do not make the Jkappa region accessible, but conversely, GT may play a role in adding PTM. Our data indicate that the epigenetic profile of IgL genes is dramatically modulated by pre-BCR signaling and B cell differentiation status.


Asunto(s)
Diferenciación Celular/inmunología , Epigénesis Genética/inmunología , Reordenamiento Génico de Cadena Ligera de Linfocito B/inmunología , Genes de las Cadenas Ligeras de las Inmunoglobulinas , Receptores de Células Precursoras de Linfocitos B/fisiología , Células Precursoras de Linfocitos B/citología , Células Precursoras de Linfocitos B/inmunología , Transducción de Señal/inmunología , Animales , Diferenciación Celular/genética , Línea Celular , Células Cultivadas , Región de Unión de la Inmunoglobulina/biosíntesis , Región de Unión de la Inmunoglobulina/genética , Cadenas Ligeras de Inmunoglobulina/biosíntesis , Cadenas Ligeras de Inmunoglobulina/genética , Región Variable de Inmunoglobulina/biosíntesis , Región Variable de Inmunoglobulina/genética , Ratones , Ratones Endogámicos BALB C , Ratones Endogámicos C57BL , Ratones Noqueados , Células Precursoras de Linfocitos B/metabolismo , Procesamiento Proteico-Postraduccional/inmunología , Transducción de Señal/genética
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