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1.
J Am Chem Soc ; 146(28): 18817-18822, 2024 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-38968608

RESUMEN

NAD(H)-dependent enzymes play a crucial role in the biosynthesis of pharmaceuticals and fine chemicals, but the limited recyclability of the NAD(H) cofactor hinders its more general application. Here, we report the generation of mechano-responsive PEI-modified Cry3Aa protein crystals and their use for NADH recycling over multiple reaction cycles. For demonstration of its practical utility, a complementary Cry3Aa protein particle containing genetically encoded and co-immobilized formate dehydrogenase for NADH regeneration and leucine dehydrogenase for catalyzing the NADH-dependent l-tert-leucine (l-tert-Leu) biosynthesis has been produced. When combined with the PEI-modified Cry3Aa crystal, the resultant reaction system could be used for the efficient biosynthesis of l-tert-Leu for up to 21 days with a 10.5-fold improvement in the NADH turnover number.


Asunto(s)
Formiato Deshidrogenasas , NAD , NAD/metabolismo , NAD/química , Formiato Deshidrogenasas/metabolismo , Formiato Deshidrogenasas/química , Leucina-Deshidrogenasa/metabolismo , Leucina-Deshidrogenasa/química , Cristalización , Enzimas Inmovilizadas/química , Enzimas Inmovilizadas/metabolismo , Modelos Moleculares
2.
Subcell Biochem ; 96: 355-372, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33252736

RESUMEN

Thermostability is a key factor in the industrial and clinical application of enzymes, and understanding mechanisms of thermostability is valuable for molecular biology and enzyme engineering. In this chapter, we focus on the thermostability of leucine dehydrogenase (LDH, EC 1.4.1.9), an amino acid-metabolizing enzyme that is an NAD+-dependent oxidoreductase which catalyzes the deamination of branched-chain l-amino acids (BCAAs). LDH from Geobacillus stearothermophilus (GstLDH) is a highly thermostable enzyme that has already been applied to quantify the concentration of BCAAs in biological specimens. However, the molecular mechanism of its thermostability had been unknown because no high-resolution structure was available. Here, we discuss the thermostability of GstLDH on the basis of its structure determined by cryo-electron microscopy. Sequence comparison with other structurally characterized LDHs (from Lysinibacillus sphaericus and Sporosarcina psychrophila) indicated that non-conserved residues in GstLDH, including Ala94, Tyr127, and the C-terminal region, are crucial for oligomeric stability through intermolecular interactions between protomers. Furthermore, NAD+ binding to GstLDH increased the thermostability of the enzyme as additional intermolecular interactions formed on cofactor binding. This knowledge is important for further applications and development of amino acid metabolizing enzymes in industrial and clinical fields.


Asunto(s)
Leucina-Deshidrogenasa/química , Leucina-Deshidrogenasa/metabolismo , Bacillaceae/enzimología , Microscopía por Crioelectrón , Estabilidad de Enzimas , Geobacillus stearothermophilus/enzimología , Leucina-Deshidrogenasa/ultraestructura , Sporosarcina/enzimología
3.
Microb Cell Fact ; 20(1): 3, 2021 Jan 06.
Artículo en Inglés | MEDLINE | ID: mdl-33407464

RESUMEN

BACKGROUND: Biosynthesis of L-tert-leucine (L-tle), a significant pharmaceutical intermediate, by a cofactor regeneration system friendly and efficiently is a worthful goal all the time. The cofactor regeneration system of leucine dehydrogenase (LeuDH) and glucose dehydrogenase (GDH) has showed great coupling catalytic efficiency in the synthesis of L-tle, however the multi-enzyme complex of GDH and LeuDH has never been constructed successfully. RESULTS: In this work, a novel fusion enzyme (GDH-R3-LeuDH) for the efficient biosynthesis of L-tle was constructed by the fusion of LeuDH and GDH mediated with a rigid peptide linker. Compared with the free enzymes, both the environmental tolerance and thermal stability of GDH-R3-LeuDH had a great improved since the fusion structure. The fusion structure also accelerated the cofactor regeneration rate and maintained the enzyme activity, so the productivity and yield of L-tle by GDH-R3-LeuDH was all enhanced by twofold. Finally, the space-time yield of L-tle catalyzing by GDH-R3-LeuDH whole cells could achieve 2136 g/L/day in a 200 mL scale system under the optimal catalysis conditions (pH 9.0, 30 °C, 0.4 mM of NAD+ and 500 mM of a substrate including trimethylpyruvic acid and glucose). CONCLUSIONS: It is the first report about the fusion of GDH and LeuDH as the multi-enzyme complex to synthesize L-tle and reach the highest space-time yield up to now. These results demonstrated the great potential of the GDH-R3-LeuDH fusion enzyme for the efficient biosynthesis of L-tle.


Asunto(s)
Bacillus cereus/enzimología , Bacillus megaterium/enzimología , Glucosa 1-Deshidrogenasa/metabolismo , Leucina-Deshidrogenasa/metabolismo , Leucina/biosíntesis , Proteínas Recombinantes de Fusión/metabolismo , Glucosa 1-Deshidrogenasa/química , Glucosa 1-Deshidrogenasa/genética , Leucina-Deshidrogenasa/química , Leucina-Deshidrogenasa/genética , Conformación Proteica , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/aislamiento & purificación
4.
Appl Microbiol Biotechnol ; 105(9): 3625-3634, 2021 May.
Artículo en Inglés | MEDLINE | ID: mdl-33929595

RESUMEN

L-tert-leucine (L-Tle) is widely used as vital chiral intermediate for pharmaceuticals and as chiral auxiliarie for organocatalysis. L-Tle is generally prepared via the asymmetric reduction of trimethylpyruvate (TMP) catalyzed by NAD+-dependent leucine dehydrogenase (LeuDH). To improve the catalytic efficiency and coenzyme affinity of LeuDH from Bacillus cereus, mutation libraries constructed by error-prone PCR and iterative saturation mutation were screened by two kinds of high-throughput methods. Compared with the wild type, the affinity of the selected mutant E24V/E116V for TMP and NADH increased by 7.7- and 2.8-fold, respectively. And the kcat/Km of E24V/E116V on TMP was 5.4-fold higher than that of the wild type. A coupled reaction comprising LeuDH with glucose dehydrogenase of Bacillus amyloliquefaciens resulted in substrate inhibition at high TMP concentrations (0.5 M), which was overcome by batch-feeding of the TMP substrate. The total turnover number and specific space-time conversion of 0.57 M substrate increased to 11,400 and 22.8 mmol·h-1·L-1·g-1, respectively. KEY POINTS: • The constructed new high-throughput screening strategy takes into account the two indicators of catalytic efficiency and coenzyme affinity. • A more efficient leucine dehydrogenase (LeuDH) mutant (E24V/E116V) was identified. • E24V/E116V has potential for the industrial synthesis of L-tert-leucine.


Asunto(s)
Coenzimas , Valina , Catálisis , Coenzimas/metabolismo , Cinética , Leucina , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo , Valina/análogos & derivados
5.
Molecules ; 26(23)2021 Nov 30.
Artículo en Inglés | MEDLINE | ID: mdl-34885864

RESUMEN

α-Amino acids and α-keto acids are versatile building blocks for the synthesis of several commercially valuable products in the food, agricultural, and pharmaceutical industries. In this study, a novel transamination-like reaction catalyzed by leucine dehydrogenase was successfully constructed for the efficient enzymatic co-synthesis of α-amino acids and α-keto acids. In this reaction mode, the α-keto acid substrate was reduced and the α-amino acid substrate was oxidized simultaneously by the enzyme, without the need for an additional coenzyme regeneration system. The thermodynamically unfavorable oxidation reaction was driven by the reduction reaction. The efficiency of the biocatalytic reaction was evaluated using 12 different substrate combinations, and a significant variation was observed in substrate conversion, which was subsequently explained by the differences in enzyme kinetics parameters. The reaction with the selected model substrates 2-oxobutanoic acid and L-leucine reached 90.3% conversion with a high total turnover number of 9.0 × 106 under the optimal reaction conditions. Furthermore, complete conversion was achieved by adjusting the ratio of addition of the two substrates. The constructed reaction mode can be applied to other amino acid dehydrogenases in future studies to synthesize a wider range of valuable products.


Asunto(s)
Aminoácidos/biosíntesis , Cetoácidos/metabolismo , Leucina-Deshidrogenasa/metabolismo , Aminación , Aminoácidos/química , Compuestos de Amonio/metabolismo , Bacillus cereus/enzimología , Catálisis , Concentración de Iones de Hidrógeno , Cetoácidos/química , Cinética , NAD/metabolismo , Oxidación-Reducción , Especificidad por Sustrato
6.
Int J Mol Sci ; 20(8)2019 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-31022947

RESUMEN

The production of l-leucine was improved by the disruption of ltbR encoding transcriptional regulator and overexpression of the key genes (leuAilvBNCE) of the l-leucine biosynthesis pathway in Corynebacterium glutamicum XQ-9. In order to improve l-leucine production, we rationally engineered C. glutamicum to enhance l-leucine production, by improving the redox flux. On the basis of this, we manipulated the redox state of the cells by mutating the coenzyme-binding domains of acetohydroxyacid isomeroreductase encoded by ilvC, inserting NAD-specific leucine dehydrogenase, encoded by leuDH from Lysinibacillus sphaericus, and glutamate dehydrogenase encoded by rocG from Bacillus subtilis, instead of endogenous branched-chain amino acid transaminase and glutamate dehydrogenase, respectively. The yield of l-leucine reached 22.62 ± 0.17 g·L-1 by strain ΔLtbR-acetohydroxyacid isomeroreductase (AHAIR)M/ABNCME, and the concentrations of the by-products (l-valine and l-alanine) increased, compared to the strain ΔLtbR/ABNCE. Strain ΔLtbR-AHAIRMLeuDH/ABNCMLDH accumulated 22.87±0.31 g·L-1 l-leucine, but showed a drastically low l-valine accumulation (from 8.06 ± 0.35 g·L-1 to 2.72 ± 0.11 g·L-1), in comparison to strain ΔLtbR-AHAIRM/ABNCME, which indicated that LeuDH has much specificity for l-leucine synthesis but not for l-valine synthesis. Subsequently, the resultant strain ΔLtbR-AHAIRMLeuDHRocG/ABNCMLDH accumulated 23.31 ± 0.24 g·L-1 l-leucine with a glucose conversion efficiency of 0.191 g·g-1.


Asunto(s)
Vías Biosintéticas , Corynebacterium glutamicum/genética , Leucina/genética , Ingeniería Metabólica/métodos , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Corynebacterium glutamicum/metabolismo , Glutamato Deshidrogenasa (NADP+)/genética , Glutamato Deshidrogenasa (NADP+)/metabolismo , Cetoácido Reductoisomerasa/genética , Cetoácido Reductoisomerasa/metabolismo , Leucina/metabolismo , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo , Oxidación-Reducción
7.
Appl Microbiol Biotechnol ; 102(5): 2129-2141, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29352398

RESUMEN

Whole-cell catalysis with co-expression of two or more enzymes in a single host as a simple low-cost biosynthesis method has been widely studied and applied but hardly with regulation of multi-enzyme expression. Here we developed an efficient whole-cell catalyst for biosynthesis of L-phenylglycine (L-Phg) from benzoylformic acid through co-expression of leucine dehydrogenase from Bacillus cereus (BcLeuDH) and NAD+-dependent mutant formate dehydrogenase from Candida boidinii (CbFDHA10C) in Escherichia coli with tunable multi-enzyme-coordinate expression system. By co-expressing one to four copies of CbFDHA10C and optimization of the RBS sequence of BcLeuDH in the expression system, the ratio of BcLeuDH to CbFDH in E. coli BL21/pETDuet-rbs 4 leudh-3fdh A10C was finally regulated to 2:1, which was the optimal one determined by enzyme-catalyzed synthesis. The catalyst activity of E. coli BL21/pETDuet-rbs 4 leudh-3fdh A10C was 28.4 mg L-1 min-1 g-1 dry cell weight for L-Phg production using whole-cell transformation, it's was 3.7 times higher than that of engineered E. coli without enzyme expression regulation. Under optimum conditions (pH 8.0 and 35 °C), 60 g L-1 benzoylformic acid was completely converted to pure chiral L-Phg in 4.5 h with 10 g L-1 dry cells and 50.4 g L-1 ammonium formate, and with enantiomeric excess > 99.9%. This multi-enzyme-coordinate expression system strategy significantly improved L-Phg productivity and demonstrated a novel low-cost method for enantiopure L-Phg production.


Asunto(s)
Escherichia coli/genética , Escherichia coli/metabolismo , Glicina/análogos & derivados , Ingeniería Metabólica , Bacillus cereus/enzimología , Bacillus cereus/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Candida glabrata/enzimología , Candida glabrata/genética , Formiato Deshidrogenasas/genética , Formiato Deshidrogenasas/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Glicina/biosíntesis , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo
8.
Biotechnol Lett ; 39(4): 529-533, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-27999972

RESUMEN

OBJECTIVES: To reduce the unpleasant odor during 1-deoxynojirimycin (DNJ) production, the genes of leucine dehydrogenase (bcd) and phosphate butryltransferase (ptb) were deleted from Bacillus amyloliquefaciens HZ-12, and the concentrations of branched-chain short fatty acids (BCFAs) and DNJ were compared. RESULTS: By knockout of the ptb gene, 1.01 g BCFAs kg-1 was produced from fermented soybean by HZ-12Δptb. This was a 56% decrease compared with that of HZ-12 (2.27 g BCFAs kg-1). Moreover, no significant difference was found in the DNJ concentration (0.7 g kg-1). After further deletion of the bcd gene from HZ-12Δptb, no BCFAs was detected in fermented soybeans with HZ-12ΔptbΔbcd, while the DNJ yield decreased by 26% compared with HZ-12. CONCLUSIONS: HZ-12Δptb had decreased BCFAs formation but also maintained the stable DNJ yield, which contributed to producing DNJ-rich products with decreased unpleasant smell.


Asunto(s)
1-Desoxinojirimicina/metabolismo , Bacillus amyloliquefaciens/metabolismo , Ácidos Grasos/biosíntesis , Microbiología de Alimentos , Ingeniería Metabólica , Bacillus amyloliquefaciens/genética , Cromatografía de Gases , Cromatografía Líquida de Alta Presión , Regulación hacia Abajo , Fermentación , Expresión Génica , Técnicas de Inactivación de Genes , Genes Bacterianos , Leucina-Deshidrogenasa/metabolismo , Odorantes/prevención & control , Fosfato Acetiltransferasa/metabolismo , Glycine max/metabolismo
9.
Anal Biochem ; 495: 29-31, 2016 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-26656924

RESUMEN

A simple and rapid screening method for amino acid dehydrogenase (e.g., leucine dehydrogenase, LDH) has been developed. It relies on a competitive relationship between a non-fluorescent Cu(II)-calcein complex and amino acid (e.g., l-2-aminobutyric acid, l-ABA). When ABA was introduced to a Cu(II)-calcein solution, it bound with the Cu(II) ions and this released calcein from the complex, which was detected as strong fluorescence. The principle of this high-throughput screening method was validated by screening an LDH mutant library. Compared with other methods, this method provided much quicker l-ABA detection and screening for leucine dehydrogenase mutations.


Asunto(s)
Pruebas de Enzimas/métodos , Ensayos Analíticos de Alto Rendimiento , Leucina-Deshidrogenasa/metabolismo , Aminobutiratos/metabolismo , Complejos de Coordinación/química , Cobre/química , Fluoresceínas/química , Iones/química , Espectrometría de Fluorescencia
10.
Appl Microbiol Biotechnol ; 100(13): 5805-13, 2016 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-26898942

RESUMEN

L-tert-Leucine and its derivatives are used as synthetic building blocks for pharmaceutical active ingredients, chiral auxiliaries, and ligands. Leucine dehydrogenase (LeuDH) is frequently used to prepare L-tert-leucine from the α-keto acid precursor trimethylpyruvate (TMP). In this study, a high-throughput screening method for the L-tert-leucine synthesis reaction based on a spectrophotometric approach was developed. Directed evolution strategy was applied to engineer LeuDH from Lysinibacillus sphaericus for improved efficiency of L-tert-leucine synthesis. After two rounds of random mutagenesis, the specific activity of LeuDH on the substrate TMP was enhanced by more than two-fold, compared with that of the wild-type enzyme, while the activity towards its natural substrate, leucine, decreased. The catalytic efficiencies (k cat/K m) of the best mutant enzyme, H6, on substrates TMP and NADH were all enhanced by more than five-fold as compared with that of the wild-type enzyme. The efficiency of L-tert-leucine synthesis by mutant H6 was significantly improved. A productivity of 1170 g/l/day was achieved for the mutant enzyme H6, compared with 666 g/l/day for the wild-type enzyme.


Asunto(s)
Bacillaceae/enzimología , Proteínas Bacterianas/química , Evolución Molecular Dirigida/métodos , Leucina-Deshidrogenasa/química , Leucina/metabolismo , Bacillaceae/química , Bacillaceae/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Leucina/química , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo , Ingeniería de Proteínas , Especificidad por Sustrato
11.
Biotechnol Lett ; 38(1): 123-9, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26376640

RESUMEN

OBJECTIVE: To make the previously developed biosynthesis of L-2-aminobutyric acid (L-ABA) more suitable for the industrial-scale production. RESULTS: A recyclable biotransformation system was developed based on immobilized enzyme technology. The conversion yield of L-threonine (at 90 g l(-1)) reached 99.9 % and the theoretical yield of L-ABA reached more than 90 % using the optimized biotransformation system by the individual immobilization of threonine deaminase and the co-immobilization of L leucine dehydrogenase and formate dehydrogenase. 90 g L-threonine l(-1) was converted to 73.9 g L-ABA l(-1) >95 % theoretical yield, within 120-145 min in 30 batch transformation experiments. CONCLUSION: The recyclable biotransformation system is promising to fulfill industrial requirements for L-ABA production.


Asunto(s)
Aminobutiratos/metabolismo , Leucina-Deshidrogenasa/metabolismo , Treonina Deshidratasa/metabolismo , Biotransformación , Enzimas Inmovilizadas , Equipo Reutilizado/economía , Escherichia coli/metabolismo , Leucina-Deshidrogenasa/aislamiento & purificación , Treonina Deshidratasa/aislamiento & purificación
12.
Biotechnol Lett ; 38(5): 855-61, 2016 May.
Artículo en Inglés | MEDLINE | ID: mdl-26861852

RESUMEN

OBJECTIVE: A potential thermotolerant L-leucine dehydrogenase from Laceyella sacchari (Ls-LeuDH) was over-expressed in E. coli, purified and characterized. RESULTS: Ls-LeuDH had excellent thermostability with a specific activity of 183 U/mg at pH 10.5 and 25 °C. It retained a high activity in 200 mM carbonate buffer from pH 9.5 to 11. The optimal temperature for Ls-LeuDH was 60 °C. CONCLUSION: It is the first time that a thermostable and highly active LeuDH originating from L. sacchari has been characterized. It may be useful for medical and pharmaceutical applications.


Asunto(s)
Bacillales/enzimología , Leucina-Deshidrogenasa/metabolismo , Secuencia de Aminoácidos , Bacillales/genética , Clonación Molecular , Estabilidad de Enzimas , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Concentración de Iones de Hidrógeno , Leucina-Deshidrogenasa/química , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/aislamiento & purificación , Datos de Secuencia Molecular , Filogenia , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido , Temperatura
13.
Wei Sheng Wu Xue Bao ; 56(11): 1709-18, 2016 Nov 04.
Artículo en Zh | MEDLINE | ID: mdl-29741833

RESUMEN

Objective: Different co-expression strategies to express leucine dehydrogenase and glucose dehydrogenase in E. coli were done to observe the effect of expression of different enzyme. A recombinant strain with two high enzyme activities was built for efficiently asymmetric synthesis of L-tert-leucine. Methods: The leucine dehydrogenase (ldh) from Bacillus cereus and glucose dehydrogenase (gdh) from Bacillus sp. were co-expressed by three different strategies, including co-expressing two genes in single vector, co-expressing two genes in two vectors and expressing fusion protein. The catalytic efficiencies of recombinant strains with different enzyme activity ratio in different modes of biocatalyst were compared to produce L-tert-leucine from its corresponding α-keto acids. Results: Different co-expression strategies displayed a slight impact on leucine dehydrogenase expression, whereas, a greater impact on glucose dehydrogenase. All the activity of leucine dehydrogenase was normally expressed, but the fusion proteins lost the activity of glucose dehydrogenase. Besides, the activity of glucose dehydrogenase was also totally inhibited when the 6-histidine tag was fused at C termini, which indicated the additional 6-histidine tag considerately depressed the glucose dehydrogenase activity. After optimization of expression, three recombinant strains exhibiting high enzyme activity and different enzyme activity ratio were used to synthesis L-tert-leucine in the mode of cell-free extracts and whole-cell. Result displayed a great influence on the catalytic efficiencies resulted from the mode of catalyst and enzyme activity. When the cell-free crude culture broth of E. coli BL21/pET28a-L-SD-AS-G coexpressing two genes in single vector was used as biocatalyst, 15 g/L cell loading and 0.1 mmol/L NAD+ were enough to completely transform 0.5 mol/L trimethylpyruvate into L-tert-leucine. Conclusion: The recombinant strain with high activities of leucine dehydrogenase and glucose dehydrogenase was achieved by co-expressing two genes in single vector without histidine tag in E. coli and L-tert-leucine was efficiently produced with this recombinant strain.


Asunto(s)
Bacillus/enzimología , Proteínas Bacterianas/genética , Escherichia coli/genética , Glucosa 1-Deshidrogenasa/genética , Leucina-Deshidrogenasa/genética , Proteínas Bacterianas/metabolismo , Escherichia coli/metabolismo , Expresión Génica , Glucosa 1-Deshidrogenasa/metabolismo , Leucina/análogos & derivados , Leucina-Deshidrogenasa/metabolismo , Ingeniería Metabólica , Valina/análogos & derivados , Valina/biosíntesis
14.
Biotechnol Lett ; 36(4): 835-41, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24322776

RESUMEN

L-2-Aminobutyric acid (L-ABA) is an unnatural amino acid that is a key intermediate for the synthesis of several important drugs. It can be produced by transaminase or dehydrogenase from α-ketobutyric acid, which can be synthesized enzymatically from the bulk amino acid, L-threonine. Deamination of L-threonine followed by a hydrogenation reaction gave almost the theoretical yield and was estimated to be more cost-effective than the established chemical process. L-Threonine deaminase from Escherichia coli, L-leucine dehydrogenase from Bacillus cereus, and formate dehydrogenase from Pseudomonas sp. were over-expressed in E. coli and used for one-pot production of L-ABA with formate as a co-substrate for NADH regeneration. 30 mol L-threonine were converted to 29.2 mol L-ABA at 97.3 % of theoretical yield and with productivity of 6.37 g l(-1) h(-1) at 50 l. This process offers a promising approach to fulfil industrial requirements for L-ABA.


Asunto(s)
Aminobutiratos/metabolismo , Formiato Deshidrogenasas/metabolismo , Leucina-Deshidrogenasa/metabolismo , NAD/metabolismo , Treonina Deshidratasa/metabolismo , Treonina/metabolismo , Bacillus cereus/enzimología , Bacillus cereus/genética , Escherichia coli/enzimología , Escherichia coli/genética , Formiato Deshidrogenasas/genética , Expresión Génica , Leucina-Deshidrogenasa/genética , Pseudomonas/enzimología , Pseudomonas/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Treonina Deshidratasa/genética
15.
Biotechnol J ; 18(5): e2200465, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-36738237

RESUMEN

Enzymatic asymmetric synthesis of chiral amino acids has great industrial potential. However, the low catalytic efficiency of high-concentration substrates limits their industrial application. Herein, using a combination of substrate catalytic efficiency prediction based on "open to closed" conformational change and substrate specificity prediction, a novel leucine dehydrogenase (TsLeuDH), with high substrate catalytic efficiency toward benzoylformic acid (BFA) for producing l-phenylglycine (l-Phg), was directly identified from 4695 putative leucine dehydrogenases in a public database. The specific activity of TsLeuDH was determined to be as high as 4253.8 U mg-1 . Through reaction process optimization, a high-concentration substrate (0.7 m) was efficiently and completely converted within 90 min in a single batch, without any external coenzyme addition. Moreover, a continuous flow-feeding approach was designed using gradient control of the feed rate to reduce substrate accumulation. Finally, the highest overall substrate concentration of up to 1.2 m BFA could be aminated to l-Phg with conversion of >99% in 3 h, demonstrating that this new combination of enzyme process development is promising for large-scale application of l-Phg.


Asunto(s)
Aminoácidos , Glicina , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo , Catálisis , Especificidad por Sustrato , Leucina
16.
Biotechnol J ; 18(8): e2200590, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-37149736

RESUMEN

L-2-aminobutyric acid (L-2-ABA) is a chiral precursor for the synthesis of anti-epileptic drug levetiracetam and anti-tuberculosis drug ethambutol. Asymmetric synthesis of L-2-ABA by leucine dehydrogenases has been widely developed. However, the limitations of natural enzymes, such as poor stability, low catalytic efficiency, and inhibition of high-concentration substrates, limit large-scale applications. Herein, by directed screening of a metagenomic library from unnatural amino acid-enriched environments, a robust leucine dehydrogenase, TvLeuDH, was identified, which exhibited high substrate tolerance and excellent enzymatic activity towards 2-oxobutyric acid. In addition, TvLeuDH has strong affinity for NADH. Subsequently, a three-enzyme co-expression system containing L-threonine deaminase, TvLeuDH, and glucose dehydrogenase was established. By optimizing reaction conditions, 1.5 M L-threonine could be converted to L-2-ABA with a 99% molar conversion rate and a space-time yield of 51.5 g·L-1 ·h-1 . In this process, no external coenzyme was added. The robustness of TvLeuDH allowed the reaction to be performed without the addition of extra salt as the buffer, demonstrating the simplest reaction system currently reported. These unique properties for the efficient and environmentally friendly production of chiral amino acids make TvLeuDH a particularly promising candidate for industrial applications, which reveals the great potential of directed metagenomics for industrial biotechnology.


Asunto(s)
Aminobutiratos , Metagenoma , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo , Aminobutiratos/metabolismo , Biotecnología , Leucina
17.
Enzyme Microb Technol ; 166: 110225, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-36921551

RESUMEN

L-Phosphinothricin (L-PPT) is the effective constituent in racemic PPT (a high-efficiency and broad-spectrum herbicide), and the exploitation of green and sustainable synthesis route for L-PPT has always been the focus in pesticide industry. In recent years, "one-pot, two-step" enzyme-mediated cascade strategy is a mainstream pathway to obtain L-PPT. Herein, RgDAAO and BsLeuDH were applied to expand "one-pot, two-step" process. Notably, a NADH-dependent leucine dehydrogenase from Bacillus subtilis (BsLeuDH) was firstly characterized and attempted to generate L-PPT, achieving an excellent enantioselectivity (99.9% ee). Meanwhile, a formate dehydrogenase from Pichia pastoris (PpFDH) was utilized to implement NADH cofactor regeneration and only CO2 was by-product. Sufficient amount of the corresponding keto acid precursor PPO was obtained by oxidation of D-PPT relying on a D-amino acid oxidase from Rhodotorula gracilis (RgDAAO) with content conversion (46.1%). L-PPT was ultimately prepared from racemized PPT via oxidative deamination catalyzed by RgDAAO and reductive amination catalyzed by BsLeuDH, achieving 80.3% overall yield and > 99.9% ee value.


Asunto(s)
NADH Deshidrogenasa , NAD , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo , NAD/metabolismo , Leucina , NADH Deshidrogenasa/metabolismo
18.
Mol Cells ; 45(7): 495-501, 2022 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-35698914

RESUMEN

Leucine dehydrogenase (LDH, EC 1.4.1.9) catalyzes the reversible deamination of branched-chain L-amino acids to their corresponding keto acids using NAD+ as a cofactor. LDH generally adopts an octameric structure with D4 symmetry, generating a molecular mass of approximately 400 kDa. Here, the crystal structure of the LDH from Pseudomonas aeruginosa (Pa-LDH) was determined at 2.5 Å resolution. Interestingly, the crystal structure shows that the enzyme exists as a dimer with C2 symmetry in a crystal lattice. The dimeric structure was also observed in solution using multiangle light scattering coupled with size-exclusion chromatography. The enzyme assay revealed that the specific activity was maximal at 60°C and pH 8.5. The kinetic parameters for three different amino acid and the cofactor (NAD+) were determined. The crystal structure represents that the subunit has more compact structure than homologs' structure. In addition, the crystal structure along with sequence alignments indicates a set of non-conserved arginine residues which are important in stability. Subsequent mutation analysis for those residues revealed that the enzyme activity reduced to one third of the wild type. These results provide structural and biochemical insights for its future studies on its application for industrial purposes.


Asunto(s)
NAD , Pseudomonas aeruginosa , Aminoácidos , Leucina-Deshidrogenasa/metabolismo , NAD/metabolismo , Especificidad por Sustrato
19.
J Biotechnol ; 358: 17-24, 2022 Nov 10.
Artículo en Inglés | MEDLINE | ID: mdl-35987310

RESUMEN

(S)-2-chlorophenylglycine ((S)-CPG) is a key chiral intermediate for the synthesis of clopidogrel. Herein, a novel, efficient and environmentally friendly chemo-enzymatic route for the preparation of optically pure (S)-CPG was developed. A straightforward chemical synthesis of the corresponding prochiral keto acid substrate (2-chlorophenyl)glyoxylic acid (CPGA) was developed with 91.7% yield, which was enantioselectively aminated by leucine dehydrogenase (LeuDH) to (S)-CPG. Moreover, protein engineering of LeuDH was performed via directed evolution and semi-rational design. A beneficial variant EsLeuDH-F362L with enlarged substrate-binding pocket and increased hydrogen bond between K77 and substrate CPGA was constructed, which exhibited 2.1-fold enhanced specific activity but decreased thermal stability. Coupled with a glucose dehydrogenase from Bacillus megaterium (BmGDH) for NADH regeneration, EsLeuDH-F362L completely converted up to 0.5 M CPGA to (S)-CPG in 8 h at 40 °C.


Asunto(s)
Proteínas Bacterianas , NAD , Proteínas Bacterianas/metabolismo , Biocatálisis , Clopidogrel , Glucosa 1-Deshidrogenasa/metabolismo , Leucina-Deshidrogenasa/metabolismo , NAD/metabolismo
20.
Bioresour Technol ; 326: 124665, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33540211

RESUMEN

Leucine dehydrogenase (LDH) is widely used in the preparation of L-2-aminobutyric acid (L-2-ABA), however its wide application is limited by 2-ketobutyric acid (2-OBA) inhibition. Firstly, a novel high-throughput screening method of LDH was established, specific enzyme activity and 2-OBA tolerance of Lys72Ala mutant were 33.3% higher than those of the wild type. Subsequently, we constructed a single cell comprised of ivlA, EsldhK72A, fdh and optimized expression through fine-tuning RBS intensity, so that the yield of E. coli BL21/pET28a-R3ivlA-EsldhK72A-fdh was 2.6 times higher than that of the original strain. As a result, 150 g L-threonine was transformed to 121 g L-2-ABA in 5 L fermenter with 95% molar conversion rate, and a productivity of 5.04 g·L-1·h-1, which is the highest productivity of L-2-ABA currently reported by single-cell biotransformation. In summary, our research provided a green synthesis for L-2-ABA, which has potential for industrial production of drug precursors.


Asunto(s)
Aminobutiratos , Escherichia coli , Aminobutiratos/metabolismo , Biotransformación , Escherichia coli/genética , Escherichia coli/metabolismo , Leucina-Deshidrogenasa/genética , Leucina-Deshidrogenasa/metabolismo
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