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1.
Trends Biochem Sci ; 39(3): 121-9, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24507752

RESUMEN

Fic enzymes post-translationally modify proteins through AMPylation, UMPylation, phosphorylation, or phosphocholination. They have been identified across all domains of life, and they target a myriad of proteins such as eukaryotic GTPases, unstructured protein segments, and bacterial enzymes. Consequently, they play crucial roles in eukaryotic signal transduction, drug tolerance, bacterial pathogenicity, and the bacterial stress response. Structurally, they consist of an all α-helical core domain that supports and scaffolds a structurally conserved active-site loop, which catalyses the transfer of various parts of a nucleotide cofactor to proteins. Despite their diverse substrates and targets, they retain a conserved active site and reaction chemistry. This catalytic variety came to light only recently with the crystal structures of different Fic enzymes.


Asunto(s)
Bacterias , Proteínas Bacterianas , GTP Fosfohidrolasas , Modificación Traduccional de las Proteínas/fisiología , Transferasas , Animales , Bacterias/enzimología , Bacterias/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Cristalografía por Rayos X , GTP Fosfohidrolasas/química , GTP Fosfohidrolasas/genética , GTP Fosfohidrolasas/metabolismo , Humanos , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Transferasas/química , Transferasas/genética , Transferasas/metabolismo
2.
Mol Pharmacol ; 87(2): 286-95, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25452327

RESUMEN

Pancreatic cancer is an aggressive disease with limited therapeutic options. Melanoma differentiation-associated gene-7/interleukin-24 (mda-7/IL-24), a potent antitumor cytokine, shows cancer-specific toxicity in a vast array of human cancers, inducing endoplasmic reticulum stress and apoptosis, toxic autophagy, an antitumor immune response, an antiangiogenic effect, and a significant "bystander" anticancer effect that leads to enhanced production of this cytokine through autocrine and paracrine loops. Unfortunately, mda-7/IL-24 application in pancreatic cancer has been restricted because of a "translational block" occurring after Ad.5-mda-7 gene delivery. Our previous research focused on developing approaches to overcome this block and increase the translation of the MDA-7/IL-24 protein, thereby promoting its subsequent toxic effects in pancreatic cancer cells. We demonstrated that inducing reactive oxygen species (ROS) after adenoviral infection of mda-7/IL-24 leads to greater translation into MDA-7/IL-24 protein and results in toxicity in pancreatic cancer cells. In this study we demonstrate that a novel chimeric serotype adenovirus, Ad.5/3-mda-7, displays greater efficacy in delivering mda-7/IL-24 compared with Ad.5-mda-7, although overall translation of the protein still remains low. We additionally show that d-limonene, a dietary monoterpene known to induce ROS, is capable of overcoming the translational block when used in combination with adenoviral gene delivery. This novel combination results in increased polysome association of mda-7/IL-24 mRNA, activation of the preinitiation complex of the translational machinery in pancreatic cancer cells, and culminates in mda-7/IL-24-mediated toxicity.


Asunto(s)
Técnicas de Transferencia de Gen , Terapia Genética/métodos , Interleucinas/genética , Interleucinas/metabolismo , Neoplasias Pancreáticas/genética , Neoplasias Pancreáticas/metabolismo , Línea Celular Tumoral , Quimioprevención/métodos , Humanos , Interleucinas/administración & dosificación , Neoplasias Pancreáticas/terapia , Modificación Traduccional de las Proteínas/fisiología , Especies Reactivas de Oxígeno/metabolismo
3.
EMBO J ; 30(17): 3567-80, 2011 Jul 26.
Artículo en Inglés | MEDLINE | ID: mdl-21792172

RESUMEN

In budding yeast, several mRNAs are selectively transported into the daughter cell in an actin-dependent manner by a specialized myosin system, the SHE machinery. With ABP140 mRNA, we now describe the first mRNA that is transported in the opposite direction and localizes to the distal pole of the mother cell, independent of the SHE machinery. Distal pole localization is not observed in mutants devoid of actin cables and can be disrupted by latrunculin A. Furthermore, localization of ABP140 mRNA requires the N-terminal actin-binding domain of Abp140p to be expressed. By replacing the N-terminal localization motif, ABP140 mRNA can be retargeted to different subcellular structures. In addition, accumulation of the mRNA at the distal pole can be prevented by disruption of polysomes. Using the MS2 system, the mRNA was found to associate with actin cables and to follow actin cable dynamics. We therefore propose a model of translational coupling, in which ABP140 mRNA is tethered to actin cables via its nascent protein product and is transported to the distal pole by actin retrograde flow.


Asunto(s)
Proteínas de Microfilamentos/metabolismo , Modificación Traduccional de las Proteínas/fisiología , ARN Mensajero/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Citoesqueleto de Actina/efectos de los fármacos , Citoesqueleto de Actina/metabolismo , Transporte Biológico/efectos de los fármacos , Compuestos Bicíclicos Heterocíclicos con Puentes/farmacología , Polirribosomas/efectos de los fármacos , Polirribosomas/metabolismo , Modificación Traduccional de las Proteínas/efectos de los fármacos , Estructura Terciaria de Proteína , Proteínas de Saccharomyces cerevisiae/efectos de los fármacos , Tiazolidinas/farmacología
4.
J Bacteriol ; 196(21): 3768-75, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25157077

RESUMEN

In Escherichia coli, synthesis of the malonyl coenzyme A (malonyl-CoA) required for membrane lipid synthesis is catalyzed by acetyl-CoA carboxylase, a large complex composed of four subunits. The subunit proteins are needed in a defined stoichiometry, and it remains unclear how such production is achieved since the proteins are encoded at three different loci. Meades and coworkers (G. Meades, Jr., B. K. Benson, A. Grove, and G. L. Waldrop, Nucleic Acids Res. 38:1217-1227, 2010, doi:http://dx.doi.org/10.1093/nar/gkp1079) reported that coordinated production of the AccA and AccD subunits is due to a translational repression mechanism exerted by the proteins themselves. The AccA and AccD subunits form the carboxyltransferase (CT) heterotetramer that catalyzes the second partial reaction of acetyl-CoA carboxylase. Meades et al. reported that CT tetramers bind the central portions of the accA and accD mRNAs and block their translation in vitro. However, long mRNA molecules (500 to 600 bases) were required for CT binding, but such long mRNA molecules devoid of ribosomes seemed unlikely to exist in vivo. This, plus problematical aspects of the data reported by Meades and coworkers, led us to perform in vivo experiments to test CT tetramer-mediated translational repression of the accA and accD mRNAs. We report that increased levels of CT tetramer have no detectable effect on translation of the CT subunit mRNAs.


Asunto(s)
Acetil-CoA Carboxilasa/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/enzimología , Regulación Bacteriana de la Expresión Génica/fisiología , Regulación Enzimológica de la Expresión Génica/fisiología , Modificación Traduccional de las Proteínas/fisiología , Acetil-CoA Carboxilasa/genética , Escherichia coli/genética , Proteínas de Escherichia coli/genética , ARN Mensajero/genética , ARN Mensajero/metabolismo
5.
J Neurosci ; 33(7): 2732-53, 2013 Feb 13.
Artículo en Inglés | MEDLINE | ID: mdl-23407934

RESUMEN

The immense molecular diversity of neurons challenges our ability to understand the genetic and cellular etiology of neuropsychiatric disorders. Leveraging knowledge from neurobiology may help parse the genetic complexity: identifying genes important for a circuit that mediates a particular symptom of a disease may help identify polymorphisms that contribute to risk for the disease as a whole. The serotonergic system has long been suspected in disorders that have symptoms of repetitive behaviors and resistance to change, including autism. We generated a bacTRAP mouse line to permit translational profiling of serotonergic neurons. From this, we identified several thousand serotonergic-cell expressed transcripts, of which 174 were highly enriched, including all known markers of these cells. Analysis of common variants near the corresponding genes in the AGRE collection implicated the RNA binding protein CELF6 in autism risk. Screening for rare variants in CELF6 identified an inherited premature stop codon in one of the probands. Subsequent disruption of Celf6 in mice resulted in animals exhibiting resistance to change and decreased ultrasonic vocalization as well as abnormal levels of serotonin in the brain. This work provides a reproducible and accurate method to profile serotonergic neurons under a variety of conditions and suggests a novel paradigm for gaining information on the etiology of psychiatric disorders.


Asunto(s)
Trastorno Autístico/genética , Trastorno Autístico/psicología , Perfilación de la Expresión Génica/métodos , Modificación Traduccional de las Proteínas/genética , Modificación Traduccional de las Proteínas/fisiología , Proteínas de Unión al ARN/genética , Proteínas de Unión al ARN/fisiología , Neuronas Serotoninérgicas/fisiología , Serotonina/fisiología , Animales , Conducta Animal/fisiología , Proteínas CELF , Estudio de Asociación del Genoma Completo , Humanos , Inmunohistoquímica , Aprendizaje por Laberinto/fisiología , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Microscopía Fluorescente , Mutación/genética , Mutación/fisiología , Neurotransmisores/metabolismo , Polimorfismo Genético , ARN Mensajero/biosíntesis , ARN Mensajero/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Ribosomas/genética , Ribosomas/metabolismo , Proteínas de Transporte de Serotonina en la Membrana Plasmática/genética , Olfato/fisiología , Conducta Social , Vocalización Animal/fisiología
6.
Biochim Biophys Acta ; 1829(1): 116-26, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22982193

RESUMEN

The Paf1 complex was originally identified over fifteen years ago in budding yeast through its physical association with RNA polymerase II. The Paf1 complex is now known to be conserved throughout eukaryotes and is well studied for promoting RNA polymerase II transcription elongation and transcription-coupled histone modifications. Through these critical regulatory functions, the Paf1 complex participates in numerous cellular processes such as gene expression and silencing, RNA maturation, DNA repair, cell cycle progression and prevention of disease states in higher eukaryotes. In this review, we describe the historic and current research involving the eukaryotic Paf1 complex to explain the cellular roles that underlie its conservation and functional importance. This article is part of a Special Issue entitled: RNA polymerase II Transcript Elongation.


Asunto(s)
Enfermedad/genética , Eucariontes/genética , Histonas/metabolismo , Proteínas Nucleares/fisiología , Transcripción Genética/genética , Animales , Secuencia Conservada , Humanos , Modelos Biológicos , Proteínas Nucleares/química , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Modificación Traduccional de las Proteínas/genética , Modificación Traduccional de las Proteínas/fisiología , Subunidades de Proteína/química , Subunidades de Proteína/genética , Subunidades de Proteína/metabolismo , Subunidades de Proteína/fisiología , Factores de Transcripción , Transcripción Genética/fisiología
7.
Biochim Biophys Acta ; 1829(1): 84-97, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22982198

RESUMEN

Eukaryotic genomes are packaged into chromatin, a highly organized structure consisting of DNA and histone proteins. All nuclear processes take place in the context of chromatin. Modifications of either DNA or histone proteins have fundamental effects on chromatin structure and function, and thus influence processes such as transcription, replication or recombination. In this review we highlight histone modifications specifically associated with gene transcription by RNA polymerase II and summarize their genomic distributions. Finally, we discuss how (mis-)regulation of these histone modifications perturbs chromatin organization over coding regions and results in the appearance of aberrant, intragenic transcription. This article is part of a Special Issue entitled: RNA polymerase II Transcript Elongation.


Asunto(s)
Histonas/metabolismo , Modificación Traduccional de las Proteínas/fisiología , Transcripción Genética/fisiología , Secuencia de Aminoácidos , Animales , Secuencia de Bases/fisiología , Inestabilidad Genómica/genética , Inestabilidad Genómica/fisiología , Histonas/química , Humanos , Modelos Biológicos , Nucleosomas/química , Nucleosomas/metabolismo , ARN Polimerasa II/metabolismo , ARN Polimerasa II/fisiología
8.
Osteoarthritis Cartilage ; 22(2): 259-63, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24333294

RESUMEN

OBJECTIVE: There is increasing evidence that the addition of O-linked N-acetylglucosamine (O-GlcNAc) to proteins plays an important role in cell signaling pathways. In chondrocytes, accumulation of O-GlcNAc-modified proteins induces hypertrophic differentiation. Osteoarthritis (OA) is characterized by cartilage degradation, and hypertrophic-like changes in hyaline chondrocytes. However, the mechanisms responsible for these changes have not been described. Our aim was to study whether O-GlcNAcylation and the enzymes responsible for this modification are dysregulated in the cartilage of patients with knee OA and whether interleukin-1 could induce these modifications in cultured human OA chondrocytes (HOC). DESIGN: Human cartilage was obtained from patients with knee OA and from age and sex-matched healthy donors. HOC were cultured and stimulated with the catabolic cytokine IL-1α. Global protein O-GlcNAcylation and the synthesis of the key enzymes responsible for this modification, O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA), were assessed by western blot. RESULTS: OA was associated with a 4-fold increase in the global O-GlcNAcylation in the cartilage. OA cartilage showed a re-distribution of the OGT and OGA isoforms, with a net increase in the presence of both enzymes, in comparison to healthy cartilage. In HOC, IL-1α stimulation rapidly increased O-GlcNAcylation and OGT and OGA synthesis. CONCLUSIONS: Our results indicate that a proinflammatory milieu could favor the accumulation of O-GlcNAcylated proteins in OA cartilage, together with the dysregulation of the enzymes responsible for this modification. The increase in O-GlcNAcylation could be responsible, at least partially, for the re-expression of hypertrophic differentiation markers that have been observed in OA.


Asunto(s)
Acetilglucosamina/metabolismo , Cartílago Articular/metabolismo , Osteoartritis de la Rodilla/metabolismo , Modificación Traduccional de las Proteínas/fisiología , Acilación , Adulto , Cartílago Articular/patología , Estudios de Casos y Controles , Diferenciación Celular/fisiología , Células Cultivadas , Condrocitos/efectos de los fármacos , Condrocitos/metabolismo , Femenino , Humanos , Mediadores de Inflamación/farmacología , Interleucina-1/farmacología , Isoenzimas/biosíntesis , Masculino , Persona de Mediana Edad , N-Acetilglucosaminiltransferasas/biosíntesis , Osteoartritis de la Rodilla/patología , Modificación Traduccional de las Proteínas/efectos de los fármacos , beta-N-Acetilhexosaminidasas/biosíntesis
9.
Proteomics ; 13(5): 833-44, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23303650

RESUMEN

Viroids are single-stranded, circular, noncoding RNAs that infect plants, causing devastating diseases. In this work, we employed 2D DIGE, followed by MS identification, to analyze the response of tomato plants infected by Citrus exocortis viroid (CEVd). Among the differentially expressed proteins detected, 45 were successfully identified and classified into different functional categories. Validation results by RT-PCR allowed us to classify the proteins into two expression groups. First group included genes with changes at the transcriptional level upon CEVd infection, such as an endochitinase, a ß-glucanase, and pathogenesis-related proteins, PR10 and P69G. All these defense proteins were also induced by gentisic acid, a pathogen-induced signal in compatible interactions. The second group of proteins showed no changes at the transcriptional level and included several ribosomal proteins and translation factors, such as the elongation factors 1 and 2 and the translation initiation factor 5-alpha. These results were validated by 2D Western blot, and possible PTMs caused by CEVd infection were detected. Moreover, an interaction between eukaryotic elongation factor 1 and CEVd was observed by 2D Northwestern. The present study provides new protein-related information on the mechanisms of plant resistance to pathogens.


Asunto(s)
Regulación de la Expresión Génica de las Plantas/fisiología , Solanum lycopersicum/fisiología , Viroides/fisiología , Western Blotting , Electroforesis en Gel Bidimensional , Factor 1 Eucariótico de Iniciación/química , Factor 1 Eucariótico de Iniciación/metabolismo , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Gentisatos/farmacología , Solanum lycopersicum/genética , Solanum lycopersicum/metabolismo , Solanum lycopersicum/virología , Enfermedades de las Plantas , Proteínas de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Reacción en Cadena de la Polimerasa , Unión Proteica , Modificación Traduccional de las Proteínas/efectos de los fármacos , Modificación Traduccional de las Proteínas/fisiología , Proteoma/efectos de los fármacos , Proteoma/fisiología , ARN Viral/química , ARN Viral/metabolismo , Reproducibilidad de los Resultados , Ácido Salicílico/farmacología
10.
J Neurosci ; 32(4): 1467-80, 2012 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-22279231

RESUMEN

sorLA is a sorting receptor for amyloid precursor protein (APP) genetically linked to Alzheimer's disease (AD). Retromer, an adaptor complex in the endosome-to-Golgi retrieval pathway, has been implicated in APP transport because retromer deficiency leads to aberrant APP sorting and processing and levels of retromer proteins are altered in AD. Here we report that sorLA and retromer functionally interact in neurons to control trafficking and amyloidogenic processing of APP. We have identified a sequence (FANSHY) in the cytoplasmic domain of sorLA that is recognized by the VPS26 subunit of the retromer complex. Accordingly, we characterized the interaction between the retromer complex and sorLA and determined the role of retromer on sorLA-dependent sorting and processing of APP. Mutations in the VPS26 binding site resulted in receptor redistribution to the endosomal network, similar to the situation seen in cells with VPS26 knockdown. The sorLA mutant retained APP-binding activity but, as opposed to the wild-type receptor, misdirected APP into a distinct non-Golgi compartment, resulting in increased amyloid processing. In conclusion, our data provide a molecular link between reduced retromer expression and increased amyloidogenesis as seen in patients with sporadic AD.


Asunto(s)
Precursor de Proteína beta-Amiloide/metabolismo , Proteínas Relacionadas con Receptor de LDL/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Modificación Traduccional de las Proteínas/fisiología , Secuencias de Aminoácidos/genética , Secuencia de Aminoácidos , Precursor de Proteína beta-Amiloide/genética , Animales , Humanos , Proteínas Relacionadas con Receptor de LDL/genética , Proteínas de Transporte de Membrana/genética , Datos de Secuencia Molecular , Células PC12 , Unión Proteica/genética , Dominios y Motivos de Interacción de Proteínas/genética , Modificación Traduccional de las Proteínas/genética , Transporte de Proteínas/genética , Ratas
11.
Am J Pathol ; 180(6): 2462-78, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-22546478

RESUMEN

Lesions displaying a variety of dysplastic changes precede invasive oral and epidermal squamous cell carcinoma (SCC); however, there are no histopathological criteria for either confirming or staging premalignancy. SCCs and dysplasias frequently contain cells that abnormally express the γ2 subunit of laminin-332. We developed cell culture models to investigate γ2 dysregulation. Normal human keratinocytes displayed density-dependent repression of γ2, whereas premalignant keratinocytes and SCC cells overexpressed γ2 and secreted laminin assembly intermediates. Neoplastic cells had hyperactive EGFR/MAPK(ERK) signaling coordinate with overexpressed γ2, and EGFR and MEK inhibitors normalized γ2 expression. Keratinocytes engineered to express HPV16 E6 or activated mutant HRAS, cRAF1, or MEK1 lost density repression of γ2 and shared with neoplastic cells signaling abnormalities downstream of ERK, including increased phosphorylation of S6 and eIF4 translation factors. Notably, qPCR results revealed that γ2 overexpression was not accompanied by increased γ2 mRNA levels, consistent with ERK-dependent, eIF4B-mediated translation initiation of the stem-looped, 5'-untranslated region of γ2 mRNA in neoplastic cells. Inhibitors of MEK, but not of TORC1/2, blocked S6 and eIF4B phosphorylation and γ2 overexpression. Immunostaining of oral dysplasias identified γ2 overexpression occurring within fields of basal cells that had elevated p-S6 levels. These results reveal a causal relationship between ERK-dependent translation factor activation and laminin γ2 dysregulation and identify new markers of preinvasive neoplastic change during progression to SCC.


Asunto(s)
Carcinoma de Células Escamosas/metabolismo , Laminina/biosíntesis , Quinasas de Proteína Quinasa Activadas por Mitógenos/fisiología , Neoplasias de la Boca/metabolismo , Lesiones Precancerosas/metabolismo , Biomarcadores de Tumor/metabolismo , Carcinoma de Células Escamosas/enzimología , Carcinoma de Células Escamosas/patología , Progresión de la Enfermedad , Receptores ErbB/metabolismo , Regulación Neoplásica de la Expresión Génica/fisiología , Humanos , Queratinocitos/metabolismo , Laminina/genética , Sistema de Señalización de MAP Quinasas/fisiología , Neoplasias de la Boca/enzimología , Neoplasias de la Boca/patología , Proteínas de Neoplasias/biosíntesis , Proteínas de Neoplasias/genética , Lesiones Precancerosas/enzimología , Lesiones Precancerosas/patología , Modificación Traduccional de las Proteínas/fisiología , Transducción de Señal/fisiología , Células Tumorales Cultivadas , Quinasas raf/fisiología , Proteínas ras/fisiología
12.
J Biol Chem ; 286(11): 8709-16, 2011 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-21216969

RESUMEN

Protein S-palmitoylation, the reversible thioester linkage of a 16-carbon palmitate lipid to an intracellular cysteine residue, is rapidly emerging as a fundamental, dynamic, and widespread post-translational mechanism to control the properties and function of ligand- and voltage-gated ion channels. Palmitoylation controls multiple stages in the ion channel life cycle, from maturation to trafficking and regulation. An emerging concept is that palmitoylation is an important determinant of channel regulation by other signaling pathways. The elucidation of enzymes controlling palmitoylation and developments in proteomics tools now promise to revolutionize our understanding of this fundamental post-translational mechanism in regulating ion channel physiology.


Asunto(s)
Activación del Canal Iónico/fisiología , Canales Iónicos/fisiología , Lipoilación/fisiología , Modificación Traduccional de las Proteínas/fisiología , Proteína S/metabolismo , Transducción de Señal/fisiología , Animales , Humanos
13.
J Biol Chem ; 286(33): 28876-28888, 2011 Aug 19.
Artículo en Inglés | MEDLINE | ID: mdl-21712391

RESUMEN

γ-Glutamyl transpeptidase (GGT) is a heterodimeric membrane enzyme that catalyzes the cleavage of extracellular glutathione and other γ-glutamyl-containing compounds. GGT is synthesized as a single polypeptide (propeptide) that undergoes autocatalytic cleavage, which results in the formation of the large and small subunits that compose the mature enzyme. GGT is extensively N-glycosylated, yet the functional consequences of this modification are unclear. We investigated the effect of N-glycosylation on the kinetic behavior, stability, and functional maturation of GGT. Using site-directed mutagenesis, we confirmed that all seven N-glycosylation sites on human GGT are modified by N-glycans. Comparative enzyme kinetic analyses revealed that single substitutions are functionally tolerated, although the N95Q mutation resulted in a marked decrease in the cleavage efficiency of the propeptide. However, each of the single site mutants exhibited decreased thermal stability relative to wild-type GGT. Combined mutagenesis of all N-glycosylation sites resulted in the accumulation of the inactive propeptide form of the enzyme. Use of N-glycosylation inhibitors demonstrated that binding of the core N-glycans, not their subsequent processing, is the critical glycosylation event governing the autocleavage of GGT. Although N-glycosylation is necessary for maturation of the propeptide, enzymatic deglycosylation of the mature wild-type GGT does not substantially impact either the kinetic behavior or thermal stability of the fully processed human enzyme. These findings are the first to establish that co-translational N-glycosylation of human GGT is required for the proper folding and subsequent cleavage of the nascent propeptide, although retention of these N-glycans is not necessary for maintaining either the function or structural stability of the mature enzyme.


Asunto(s)
Pliegue de Proteína , Modificación Traduccional de las Proteínas/fisiología , gamma-Glutamiltransferasa/metabolismo , Sustitución de Aminoácidos , Asparagina/genética , Asparagina/metabolismo , Catálisis , Estabilidad de Enzimas/fisiología , Glicosilación , Células HEK293 , Humanos , Cinética , Mutagénesis Sitio-Dirigida , Mutación Missense , Relación Estructura-Actividad , gamma-Glutamiltransferasa/genética
14.
J Biol Chem ; 286(11): 9141-9, 2011 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-21173144

RESUMEN

Two-pore channels (TPCs) localize to the endolysosomal system and have recently emerged as targets for the Ca(2+)-mobilizing messenger, nicotinic acid adenine dinucleotide phosphate (NAADP). However, their membrane topology is unknown. Using fluorescence protease protection assays, we show that human TPC1 and TPC2 possess cytosolic N and C termini and therefore an even number of transmembrane regions. Fluorophores placed at position 225 or 347 in TPC1, or 339 in TPC2 were also cytosolic, whereas a fluorophore at position 628 in TPC1 was luminal. These data together with sequence similarity to voltage-gated Ca(2+) and Na(+) channels, and unbiased in silico predictions are consistent with a topology in which two homologous domains are present, each comprising 6 transmembrane regions and a re-entrant pore loop. Immunocytochemical analysis of selectively permeabilized cells using antipeptide antibodies confirmed that the C-terminal tails of recombinant TPCs are cytosolic and that residues 240-254 of TPC2 prior to putative pore 1 are luminal. Both TPC1 and TPC2 are N-glycosylated with residues 599, 611, and 616 contributing to glycosylation of TPC1. This confirms the luminal position of these residues, which immediately precede the putative pore loop of the second domain. Mutation of all three glycosylation sites in TPC1 enhances NAADP-evoked cytosolic Ca(2+) signals. Our data establish essential features of the topology of two-pore channels.


Asunto(s)
Señalización del Calcio/fisiología , Activación del Canal Iónico/fisiología , NADP/análogos & derivados , Modificación Traduccional de las Proteínas/fisiología , Canales Catiónicos TRPC/metabolismo , Línea Celular Tumoral , Femenino , Glicosilación , Células HEK293 , Humanos , Mutación , NADP/metabolismo , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Canales Catiónicos TRPC/genética
15.
J Biol Chem ; 286(46): 40122-32, 2011 Nov 18.
Artículo en Inglés | MEDLINE | ID: mdl-21937429

RESUMEN

Site-specific GalNAc-type O-glycosylation is emerging as an important co-regulator of proprotein convertase (PC) processing of proteins. PC processing is crucial in regulating many fundamental biological pathways and O-glycans in or immediately adjacent to processing sites may affect recognition and function of PCs. Thus, we previously demonstrated that deficiency in site-specific O-glycosylation in a PC site of the fibroblast growth factor, FGF23, resulted in marked reduction in secretion of active unprocessed FGF23, which cause familial tumoral calcinosis and hyperostosis hyperphosphatemia. GalNAc-type O-glycosylation is found on serine and threonine amino acids and up to 20 distinct polypeptide GalNAc transferases catalyze the first addition of GalNAc to proteins making this step the most complex and differentially regulated steps in protein glycosylation. There is no reliable prediction model for O-glycosylation especially of isolated sites, but serine and to a lesser extent threonine residues are frequently found adjacent to PC processing sites. In the present study we used in vitro enzyme assays and ex vivo cell models to systematically address the boundaries of the region within site-specific O-glycosylation affect PC processing. The results demonstrate that O-glycans within at least ±3 residues of the RXXR furin cleavage site may affect PC processing suggesting that site-specific O-glycosylation is a major co-regulator of PC processing.


Asunto(s)
Factores de Crecimiento de Fibroblastos/metabolismo , Furina/metabolismo , Modificación Traduccional de las Proteínas/fisiología , Procesamiento Proteico-Postraduccional/fisiología , Secuencias de Aminoácidos , Animales , Células CHO , Cricetinae , Cricetulus , Factor-23 de Crecimiento de Fibroblastos , Factores de Crecimiento de Fibroblastos/genética , Furina/genética , Glicosilación , Humanos , Proteolisis
16.
J Biol Chem ; 286(10): 8085-8093, 2011 Mar 11.
Artículo en Inglés | MEDLINE | ID: mdl-21138838

RESUMEN

Human interleukin-11 (hIL-11) is a pleiotropic cytokine administered to patients with low platelet counts. From a structural point of view hIL-11 belongs to the long-helix cytokine superfamily, which is characterized by a conserved core motif consisting of four α-helices. We have investigated the region of hIL-11 that does not belong to the α-helical bundle motif, and that for the purpose of brevity we have termed "non-core region." The primary sequence of the interleukin was altered at various locations within the non-core region by introducing glycosylation sites. Functional consequences of these modifications were examined in cell-based as well as biophysical assays. Overall, the data indicated that the non-core region modulates the function of hIL-11 in two ways. First, the majority of muteins displayed enhanced cell-stimulatory properties (superagonist behavior) in a glycosylation-dependent manner, suggesting that the non-core region is biologically designed to limit the full potential of hIL-11. Second, specific modification of a predicted mini α-helix led to cytokine inactivation, demonstrating that this putative structural element belongs to site III engaging a second copy of cell-receptor gp130. These findings have unveiled new and unexpected elements modulating the biological activity of hIL-11, which may be exploited to develop more versatile medications based on this important cytokine.


Asunto(s)
Interleucina-11/metabolismo , Modificación Traduccional de las Proteínas/fisiología , Transducción de Señal/fisiología , Secuencias de Aminoácidos , Animales , Línea Celular Tumoral , Receptor gp130 de Citocinas/química , Receptor gp130 de Citocinas/genética , Receptor gp130 de Citocinas/metabolismo , Glicosilación , Humanos , Interleucina-11/agonistas , Interleucina-11/antagonistas & inhibidores , Interleucina-11/química , Interleucina-11/genética , Ratones , Relación Estructura-Actividad
17.
J Neurochem ; 120 Suppl 1: 22-33, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22122190

RESUMEN

The prescribed drugs for treatment of cognitive deficits in Alzheimer's disease (AD) patients are regarded as symptomatic drugs. Effective disease modifying therapies are not yet prescribed in AD patients. Three major hallmarks of AD (e.g. cholinergic hypofunction, Aß and tau neuropathologies) are closely linked raising the expectation that restoring the cholinergic hypofunction to normal, in particular via selective activation of M1 muscarinic receptors, may alter the onset or progression of AD dementia. This review is focused mainly on modulation of amyloid precursor processing and Aß levels in the brain via cholinergic treatment strategies based on M1 muscarinic agonists versus other cholinergic treatments (e.g. cholinesterase inhibitors prescribed for treatment of AD, M2 antagonists and nicotinic agonists). Advantages and potential drawbacks of these treatment modalities are reviewed versus the notion that due to an elusive etiology of AD, future disease modifiers should address comprehensively most of these AD hallmarks (e.g. Aß pathology, tau and tangle pathologies, as well as the cholinergic hypofunction and cognitive impairments). This major requirement may be fulfilled with M1-selective muscarinic agonists and less with other reviewed cholinergic treatments.


Asunto(s)
Enfermedad de Alzheimer/metabolismo , Precursor de Proteína beta-Amiloide/metabolismo , Colinérgicos/uso terapéutico , Modificación Traduccional de las Proteínas , Receptor Muscarínico M1/metabolismo , Enfermedad de Alzheimer/tratamiento farmacológico , Animales , Colinérgicos/farmacología , Inhibidores de la Colinesterasa/farmacología , Inhibidores de la Colinesterasa/uso terapéutico , Modelos Animales de Enfermedad , Humanos , Modificación Traduccional de las Proteínas/efectos de los fármacos , Modificación Traduccional de las Proteínas/fisiología , Receptor Muscarínico M1/agonistas , Receptor Muscarínico M1/antagonistas & inhibidores , Resultado del Tratamiento
18.
J Theor Biol ; 311: 139-52, 2012 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-22828569

RESUMEN

Unlimited ultrasensitivity in a kinase/phosphatase "futile cycle" has been a paradigmatic example of collective behaviour in multi-enzyme systems. However, its analysis has relied on the Michaelis-Menten reaction mechanism, which remains widely used despite a century of new knowledge. Modifying and demodifying enzymes accomplish different biochemical tasks; the donor that contributes the modifying group is often ignored without the impact of this time-scale separation being taken into account; and new forms of reversible modification are now known. We exploit new algebraic methods of steady-state analysis to reconcile the analysis of multi-enzyme systems with single-enzyme biochemistry using zero-order ultrasensitivity as an example. We identify the property of "strong irreversibility", in which product re-binding is disallowed. We show that unlimited ultrasensitivity is preserved for a class of complex, strongly irreversible reaction mechanisms and determine the corresponding saturation conditions. We show further that unlimited ultrasensitivity arises from a singularity in a novel "invariant" that summarises the algebraic relationship between modified and unmodified substrate. We find that this singularity also underlies knife-edge behaviour in allocation of substrate between modification states, which has implications for the coherence of futile cycles within an integrated tissue. When the enzymes are irreversible, but not strongly so, the singularity disappears in the form found here and unlimited ultrasensitivity may no longer be preserved. The methods introduced here are widely applicable to other reversible modification systems.


Asunto(s)
Modelos Biológicos , Fosfoproteínas Fosfatasas/fisiología , Proteínas Quinasas/fisiología , Modificación Traduccional de las Proteínas/fisiología
19.
Int J Biol Macromol ; 199: 252-263, 2022 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-34995670

RESUMEN

Translation of RNA to protein is a key feature of cellular life. The fidelity of this process mainly depends on the availability of correctly charged tRNAs. Different domains of tRNA synthetase (aaRS) maintain translation quality by ensuring the proper attachment of particular amino acid with respective tRNA, thus it establishes the rule of genetic code. However occasional errors by aaRS generate mischarged tRNAs, which can become lethal to the cells. Accurate protein synthesis necessitates hydrolysis of mischarged tRNAs. Various cis and trans-editing proteins are identified which recognize these mischarged products and correct them by hydrolysis. Trans-editing proteins are homologs of cis-editing domains of aaRS. The trans-editing proteins work in close association with aaRS, Ef-Tu, and ribosome to prevent global mistranslation and ensures correct charging of tRNA. In this review, we discuss the major trans-editing proteins and compared them with their cis-editing counterparts. We also discuss their structural features, biochemical activity and role in maintaining cellular protein homeostasis.


Asunto(s)
Aminoacil-ARNt Sintetasas , Biosíntesis de Proteínas , Aminoacil-ARNt Sintetasas/química , Biosíntesis de Proteínas/fisiología , Modificación Traduccional de las Proteínas/fisiología , ARN de Transferencia/química
20.
J Biol Chem ; 285(2): 1208-19, 2010 Jan 08.
Artículo en Inglés | MEDLINE | ID: mdl-19880513

RESUMEN

Mucin-type O-glycan biosynthesis is regulated by the family of UDP-GalNAc polypeptide:N-acetylgalactosaminlytransfersases (ppGalNAcTs) that catalyzes the first step in the pathway by transferring GalNAc to Ser or Thr residues in a protein from the sugar donor UDP-GalNAc. Because not all Ser/Thr residues are glycosylated, rules must exist that signal which hydroyxamino acids acquire sugar. To date, no universal consensus signal has emerged. Therefore, strategies to deduce the subset of proteins that will be glycosylated by distinct ppGalNAcTs must be developed. Mucin-type O-glycoproteins are present abundantly in bone, where we found multiple ppGalNAcT isoforms, including ppGalNAcT-1, to be highly expressed. Thus, we compared glycoproteins expressed in wild-type and Galnt1-null mice to identify bone-associated proteins that were glycosylated in a ppGalNAcT-1-dependent manner. A reduction in the apparent molecular masses of two SIBLINGs (small integrin binding ligand N-linked glycoproteins), osteopontin (OPN) and bone sialoprotein (BSP) in the Galnt1-null mice relative to those of the wild-type was observed. Several synthetic peptides derived from OPN and BSP sequences were designed to include either known or predicted (in silico) glycosylation sites. In vitro glycosylation assays of these peptides with recombinant ppGalNAcT-1, ppGalNAcT-2, or ppGalNAcT-3 demonstrated that both SIBLINGs contained Thr/Ser residues that were preferentially glycosylated by ppGalNAcT-1. In addition, lysates prepared from wild-type, but not those from Galnt1-null derived osteoblasts, could glycosylate these peptides efficiently, suggesting that OPN and BSP contain sites that are specific for ppGalNAcT-1. Our study presents a novel and systematic approach for identification of isoform-specific substrates of the ppGalNAcT family and suggests ppGalNAcT-1 to be indispensable for O-glycosylation at specific sites of the bone glycoproteins OPN and BSP.


Asunto(s)
N-Acetilgalactosaminiltransferasas/metabolismo , Osteoblastos/enzimología , Osteopontina/metabolismo , Modificación Traduccional de las Proteínas/fisiología , Animales , Células COS , Chlorocebus aethiops , Glicosilación , Ratones , Ratones Noqueados , N-Acetilgalactosaminiltransferasas/genética , Osteoblastos/citología , Osteopontina/genética , Péptidos/genética , Péptidos/metabolismo , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Polipéptido N-Acetilgalactosaminiltransferasa
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