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1.
Nat Immunol ; 14(5): 461-9, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23525087

RESUMEN

Inflammation is essential for host defense but can cause tissue damage and organ failure if unchecked. How the inflammation is resolved remains elusive. Here we report that the transcription factor Miz1 was required for terminating lipopolysaccharide (LPS)-induced inflammation. Genetic disruption of the Miz1 POZ domain, which is essential for the transactivation or repression activity of Miz1, resulted in hyperinflammation, lung injury and greater mortality in LPS-treated mice but a lower bacterial load and mortality in mice with Pseudomonas aeruginosa pneumonia. Loss of the Miz1 POZ domain prolonged the expression of proinflammatory cytokines. After stimulation, Miz1 was phosphorylated at Ser178, which was required for recruitment of the histone deacetylase HDAC1 to repress transcription of the gene encoding C/EBP-δ, an amplifier of inflammation. Our data provide a long-sought mechanism underlying the resolution of LPS-induced inflammation.


Asunto(s)
Lesión Pulmonar Aguda/inmunología , Proteína delta de Unión al Potenciador CCAAT/metabolismo , Proteínas Nucleares/metabolismo , Proteínas Inhibidoras de STAT Activados/metabolismo , Infecciones por Pseudomonas/inmunología , Pseudomonas aeruginosa/inmunología , Lesión Pulmonar Aguda/genética , Animales , Citocinas/metabolismo , Represión Enzimática/genética , Histona Desacetilasa 1/metabolismo , Tolerancia Inmunológica , Inflamación/genética , Mediadores de Inflamación/metabolismo , Lipopolisacáridos/inmunología , Ratones , Ratones Endogámicos C57BL , Ratones Mutantes , Mutagénesis Sitio-Dirigida , Proteínas de Neoplasias/genética , Proteínas Nucleares/genética , Fosforilación , Proteínas Inhibidoras de STAT Activados/genética , Infecciones por Pseudomonas/genética , Proteínas Represoras/genética , Activación Transcripcional/genética , Ubiquitina-Proteína Ligasas
2.
J Bacteriol ; 200(7)2018 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-29339417

RESUMEN

Septicemia-causing Vibrio vulnificus produces at least three exoproteases, VvpE, VvpS, and VvpM, all of which participate in interactions with human cells. Expression of VvpE and VvpS is induced in the stationary phase by multiple transcription factors, including sigma factor S, SmcR, and the cAMP-cAMP receptor protein (cAMP-CRP) complex. Distinct roles of VvpM, such as induction of apoptosis, lead us to hypothesize VvpM expression is different from that of the other exoproteases. Its transcription, which was found to be independent of sigma S, is induced at the early exponential phase and then becomes negligible upon entry into the stationary phase. SmcR and CRP were studied regarding the control of vvpM expression. Transcription of vvpM was repressed by SmcR and cAMP-CRP complex individually, which specifically bound to the regions -2 to +20 and +6 to +27, respectively, relative to the vvpM transcription initiation site. Derepression of vvpM gene expression was 10- to 40-fold greater in an smcR crp double mutant than in single-gene mutants. Therefore, these results show that the expression of V. vulnificus exoproteases is differentially regulated, and in this way, distinct proteases can engage in specific interactions with a host.IMPORTANCE An opportunistic human pathogen, Vibrio vulnificus produces multiple extracellular proteases that are involved in diverse interactions with a host. The total exoproteolytic activity is detected mainly in the supernatants of the high-cell-density cultures. However, some proteolytic activity derived from a metalloprotease, VvpM, was present in the supernatants of the low-cell-density cultures sampled at the early growth period. In this study, we present the regulatory mechanism for VvpM expression via repression by at least two transcription factors. This type of transcriptional regulation is the exact opposite of those for expression of the other V. vulnificus exoproteases. Differential regulation of each exoprotease's production then facilitates the pathogen's participation in the distinct interactions with a host.


Asunto(s)
Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Regulación Bacteriana de la Expresión Génica , Metaloendopeptidasas/biosíntesis , Metaloendopeptidasas/genética , Percepción de Quorum , Vibrio vulnificus/genética , Apoptosis , Proteína Receptora de AMP Cíclico/metabolismo , Represión Enzimática/genética , Humanos , Proteolisis , Factores de Transcripción/genética , Vibrio vulnificus/enzimología
3.
J Cell Sci ; 126(Pt 10): 2285-93, 2013 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-23525006

RESUMEN

Guided cell migration is a key mechanism for cell positioning in morphogenesis. The current model suggests that the spatially controlled activation of receptor tyrosine kinases (RTKs) by guidance cues limits Rac activity at the leading edge, which is crucial for establishing and maintaining polarized cell protrusions at the front. However, little is known about the mechanisms by which RTKs control the local activation of Rac. Here, using a multidisciplinary approach, we identify the GTP exchange factor (GEF) Vav as a key regulator of Rac activity downstream of RTKs in a developmentally regulated cell migration event, that of the Drosophila border cells (BCs). We show that elimination of the vav gene impairs BC migration. Live imaging analysis reveals that vav is required for the stabilization and maintenance of protrusions at the front of the BC cluster. In addition, activation of the PDGF/VEGF-related receptor (PVR) by its ligand the PDGF/PVF1 factor brings about activation of Vav protein by direct interaction with the intracellular domain of PVR. Finally, FRET analyses demonstrate that Vav is required in BCs for the asymmetric distribution of Rac activity at the front. Our results unravel an important role for the Vav proteins as signal transducers that couple signalling downstream of RTKs with local Rac activation during morphogenetic movements.


Asunto(s)
Drosophila melanogaster/fisiología , Proteínas Proto-Oncogénicas c-akt/metabolismo , Proteínas Proto-Oncogénicas c-vav/metabolismo , Animales , Animales Modificados Genéticamente , Movimiento Celular/genética , Extensiones de la Superficie Celular/genética , Células Cultivadas , Drosophila melanogaster/citología , Embrión no Mamífero/citología , Embrión no Mamífero/metabolismo , Represión Enzimática/genética , Femenino , Morfogénesis/genética , Proteínas Proto-Oncogénicas c-vav/genética , ARN Interferente Pequeño/genética , Eliminación de Secuencia/genética , Técnicas del Sistema de Dos Híbridos
4.
J Cell Sci ; 126(Pt 6): 1517-30, 2013 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-23418359

RESUMEN

To study the physiological role of a single microRNA (miRNA), we generated transgenic mice expressing the miRNA precursor miR-17 and found that the mature miR-17-5p and the passenger strand miR-17-3p were abundantly expressed. We showed that mature miR-17-5p and passenger strand miR-17-3p could synergistically induce the development of hepatocellular carcinoma. The mature miR-17-5p exerted this function by repressing the expression of PTEN. In contrast, the passenger strand miR-17-3p repressed expression of vimentin, an intermediate filament with the ability to modulate metabolism, and GalNT7, an enzyme that regulates metabolism of liver toxin galactosamine. Hepatocellular carcinoma cells, HepG2, transfected with miR-17 formed larger tumors with more blood vessels and less tumor cell death than mock-treated cells. Expression of miR-17 precursor modulated HepG2 proliferation, migration, survival, morphogenesis and colony formation and inhibited endothelial tube formation. Silencing of PTEN, vimentin or GalNT7 with their respective siRNAs enhanced proliferation and migration. Re-expressing these molecules reversed their roles in proliferation, migration and tumorigenesis. Further experiments indicated that these three molecules do not interact with each other, but appear to function in different signaling pathways. Our results demonstrated that a mature miRNA can function synergistically with its passenger strand leading to the same phenotype but by regulating different targets located in different signaling pathways. We anticipate that our assay will serve as a helpful model for studying miRNA regulation.


Asunto(s)
Carcinoma Hepatocelular/genética , Neoplasias Hepáticas/genética , MicroARNs/metabolismo , N-Acetilgalactosaminiltransferasas/metabolismo , Fosfohidrolasa PTEN/metabolismo , Vimentina/metabolismo , Animales , Carcinogénesis/genética , Represión Enzimática/genética , Regulación Neoplásica de la Expresión Génica , Células Hep G2 , Humanos , Ratones , Ratones Transgénicos , MicroARNs/genética , N-Acetilgalactosaminiltransferasas/genética , Fosfohidrolasa PTEN/genética , Transducción de Señal , Transgenes/genética , Ensayo de Tumor de Célula Madre , Vimentina/genética , Polipéptido N-Acetilgalactosaminiltransferasa
5.
J Biol Chem ; 288(45): 32720-32730, 2013 Nov 08.
Artículo en Inglés | MEDLINE | ID: mdl-24045949

RESUMEN

Pituitary adenylate cyclase-activating polypeptide (PACAP) functions as a neuroprotective factor through the PACAP type 1 receptor, PAC1. In a previous work, we demonstrated that nerve growth factor augmented PAC1 gene expression through the activation of Sp1 via the Ras/MAPK pathway. We also observed that PAC1 expression in Neuro2a cells was transiently suppressed during in vitro ischemic conditions, oxygen-glucose deprivation (OGD). Because endoplasmic reticulum (ER) stress is induced by ischemia, we attempted to clarify how ER stress affects the expression of PAC1. Tunicamycin, which induces ER stress, significantly suppressed PAC1 gene expression, and salubrinal, a selective inhibitor of the protein kinase RNA-like endoplasmic reticulum kinase signaling pathway of ER stress, blocked the suppression. In luciferase reporter assay, we found that two Sp1 sites were involved in suppression of PAC1 gene expression due to tunicamycin or OGD. Immunocytochemical staining demonstrated that OGD-induced transglutaminase 2 (TG2) expression was suppressed by salubrinal or cystamine, a TG activity inhibitor. Further, the OGD-induced accumulation of cross-linked Sp1 in nuclei was suppressed by cystamine or salubrinal. Together with cystamine, R283, TG2-specific inhibitor, and siRNA specific for TG2 also ameliorated OGD-induced attenuation of PAC1 gene expression. These results suggest that Sp1 cross-linking might be crucial in negative regulation of PAC1 gene expression due to TG2 in OGD-induced ER stress.


Asunto(s)
Estrés del Retículo Endoplásmico , Proteínas de Unión al GTP/biosíntesis , Sistema de Señalización de MAP Quinasas , Receptores del Polipéptido Activador de la Adenilato-Ciclasa Hipofisaria/biosíntesis , Elementos de Respuesta , Factor de Transcripción Sp1/metabolismo , Transglutaminasas/biosíntesis , Animales , Antibacterianos/farmacología , Hipoxia de la Célula/efectos de los fármacos , Hipoxia de la Célula/genética , Línea Celular Tumoral , Cinamatos/farmacología , Cistamina/farmacología , Activación Enzimática/efectos de los fármacos , Inducción Enzimática/efectos de los fármacos , Inducción Enzimática/genética , Inhibidores Enzimáticos/farmacología , Represión Enzimática/efectos de los fármacos , Represión Enzimática/genética , Proteínas de Unión al GTP/antagonistas & inhibidores , Proteínas de Unión al GTP/genética , Ratones , Proteína Glutamina Gamma Glutamiltransferasa 2 , Receptores del Polipéptido Activador de la Adenilato-Ciclasa Hipofisaria/genética , Factor de Transcripción Sp1/genética , Tiourea/análogos & derivados , Tiourea/farmacología , Transglutaminasas/antagonistas & inhibidores , Transglutaminasas/genética , Tunicamicina/farmacología
6.
J Cell Biol ; 147(7): 1365-70, 1999 Dec 27.
Artículo en Inglés | MEDLINE | ID: mdl-10613894

RESUMEN

The glucocorticoid receptor (GR) mediates the biological effects of glucocorticoids (GCs) through activation or repression of gene expression, either by DNA binding or via interaction with other transcription factors, such as AP-1. Work in tissue culture cells on the regulation of AP-1-dependent genes, such as collagenase (MMP-13) and stromelysin (MMP-3) has suggested that the antitumor and antiinflammatory activity of GCs is mediated, at least in part, by GR-mediated downmodulation of AP-1. Here, we have identified phorbol ester-induced expression of MMP-3 and MMP-13 in mouse skin as the first example of an in vivo system to measure negative interference between AP-1 and GR in the animal. Cell type-specific induction of these genes by tumor promoters is abolished by GCs. Importantly, this is also the case in GR(dim) mice expressing a DNA binding-defective mutant version of GR. In contrast, the newly identified target genes in skin, plasma glutathione peroxidase and HSP-27, were induced by GC in wild-type, but not in GR(dim) mice. Thus, these data suggest that the DNA binding-independent function of the GR is dispensable for repression of AP-1 activity in vivo and responsible for the antitumor promoting activity of GCs.


Asunto(s)
Proteínas de Unión al ADN/fisiología , Proteínas de Choque Térmico , Receptores de Glucocorticoides/fisiología , Piel/metabolismo , Factor de Transcripción AP-1/fisiología , Animales , Colagenasas/biosíntesis , Colagenasas/genética , Inducción Enzimática/genética , Represión Enzimática/efectos de los fármacos , Represión Enzimática/genética , Femenino , Glutatión Peroxidasa/genética , Glutatión Peroxidasa/metabolismo , Metaloproteinasa 13 de la Matriz , Metaloproteinasa 3 de la Matriz/biosíntesis , Metaloproteinasa 3 de la Matriz/genética , Metaloproteinasas de la Matriz/biosíntesis , Metaloproteinasas de la Matriz/genética , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Chaperonas Moleculares , Proteínas de Neoplasias/genética , Proteínas de Neoplasias/metabolismo , Receptores de Glucocorticoides/deficiencia , Receptores de Glucocorticoides/genética , Receptores de Glucocorticoides/metabolismo , Piel/enzimología , Acetato de Tetradecanoilforbol/farmacología , Factor de Transcripción AP-1/antagonistas & inhibidores
7.
Bull Math Biol ; 71(2): 453-514, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19067083

RESUMEN

During batch growth on mixtures of two growth-limiting substrates, microbes consume the substrates either sequentially (diauxie) or simultaneously. The ubiquity of these growth patterns suggests that they may be driven by a universal mechanism common to all microbial species. Recently, we showed that a minimal model accounting only for enzyme induction and dilution, the two processes that occur in all microbes, explains the phenotypes observed in batch cultures of various wild-type and mutant/recombinant cells (Narang and Pilyugin in J. Theor. Biol. 244:326-348, 2007). Here, we examine the extension of the minimal model to continuous cultures. We show that: (1) Several enzymatic trends, attributed entirely to cross-regulatory mechanisms, such as catabolite repression and inducer exclusion, can be quantitatively explained by enzyme dilution. (2) The bifurcation diagram of the minimal model for continuous cultures, which classifies the substrate consumption pattern at any given dilution rate and feed concentrations, provides a precise explanation for the empirically observed correlations between the growth patterns in batch and continuous cultures. (3) Numerical simulations of the model are in excellent agreement with the data. The model captures the variation of the steady state substrate concentrations, cell densities, and enzyme levels during the single- and mixed-substrate growth of bacteria and yeasts at various dilution rates and feed concentrations. This variation is well approximated by simple analytical expressions that furnish deep physical insights. (4) Since the minimal model describes the behavior of the cells in the absence of cross-regulatory mechanisms, it provides a rigorous framework for quantifying the effect of these mechanisms. We illustrate this by analyzing several data sets from the literature.


Asunto(s)
Bacterias/crecimiento & desarrollo , Bacterias/genética , Reactores Biológicos/microbiología , Regulación Bacteriana de la Expresión Génica , Levaduras/crecimiento & desarrollo , Levaduras/genética , Bacterias/enzimología , Técnicas de Cultivo de Célula , Inducción Enzimática/genética , Represión Enzimática/genética , Metabolismo/genética , Levaduras/enzimología
8.
Genetics ; 172(3): 1427-39, 2006 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-16361229

RESUMEN

The Saccharomyces casein kinase 1 isoforms encoded by the essential gene pair YCK1 and YCK2 control cell growth and morphogenesis and are linked to the endocytosis of several membrane proteins. Here we define roles for the Yck1,2 kinases in Mal61p maltose permease activation and trafficking, using a yck1delta yck2-2(ts) (yck(ts)) strain with conditional Yck activity. Moreover, we provide evidence that Glc7-Reg1 phosphatase acts as an upstream activator of Yck1,2 kinases in a novel signaling pathway that modulates kinase activity in response to carbon source availability. The yck(ts) strain exhibits significantly reduced maltose transport activity despite apparently normal levels and cell surface localization of maltose permease protein. Glucose-induced internalization and rapid loss of maltose transport activity of Mal61/HAp-GFP are not observed in the yck(ts) strain and maltose permease proteolysis is blocked. We show that a reg1delta mutant exhibits a phenotype remarkably similar to that conferred by yck(ts). The reg1delta phenotype is not enhanced in the yck(ts) reg1delta double mutant and is suppressed by increased Yck1,2p dosage. Further, although Yck2p localization and abundance do not change in the reg1delta mutant, Yck1,2 kinase activity, as assayed by glucose-induced HXT1 expression and Mth1 repressor stability, is substantially reduced in the reg1delta strain.


Asunto(s)
Quinasa de la Caseína I/fisiología , Glucosa/fisiología , Proteínas de Transporte de Monosacáridos/antagonistas & inhibidores , Proteínas de Transporte de Monosacáridos/metabolismo , Proteína Fosfatasa 1/fisiología , Proteínas de Saccharomyces cerevisiae/fisiología , Transducción de Señal/fisiología , Carbono/química , Carbono/metabolismo , Quinasa de la Caseína I/química , Quinasa de la Caseína I/metabolismo , Endopeptidasas/fisiología , Complejos de Clasificación Endosomal Requeridos para el Transporte , Represión Enzimática/genética , Epistasis Genética , Glucosa/química , Mutación , Proteína Fosfatasa 1/genética , Transporte de Proteínas/genética , Saccharomyces/enzimología , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Transducción de Señal/genética , Ubiquitina/metabolismo , Ubiquitina Tiolesterasa
9.
Mol Cell Biol ; 12(4): 1568-77, 1992 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-1532230

RESUMEN

The cys-3+ gene of Neurospora crassa encodes a bZIP (basic region-leucine zipper) regulatory protein that is essential for sulfur structural gene expression (e.g., ars-1+). Nuclear transcription assays confirmed that cys-3+ was under sulfur-regulated transcriptional control and that cys-3+ transcription was constitutive in sulfur controller (scon)-negative regulator mutants. Given these results, I have tested whether expression of cys-3+ under high-sulfur (repressing) conditions was sufficient to induce sulfur gene expression. The N. crassa beta-tubulin (tub) promoter was fused to the cys-3+ coding segment and used to transform a cys-3 deletion mutant. Function of the tub::cys-3 fusion in homokaryotic transformants grown under high-sulfur conditions was confirmed by Northern (RNA) and Western immunoblot analysis. The tub::cys-3 transformants showed arylsulfatase gene expression under normally repressing high-sulfur conditions. A tub::cys-3ts fusion encoding a temperature-sensitive CYS3 protein was used to confirm that the induced structural gene expression was due to CYS3 protein function. Constitutive CYS3 production did not induce scon-2+ expression under repressing conditions. In addition, a cys-3 promoter fusion to lacZ showed that CYS3 production was sufficient to induce its own expression and provides in vivo evidence for autoregulation. Finally, an apparent inhibitory effect observed with a strain carrying a point mutation at the cys-3 locus was examined by in vitro heterodimerization studies. These results support an interpretation of CYS3 as a transcriptional activator whose regulation is a crucial control point in the signal response pathway triggered by sulfur limitation.


Asunto(s)
Regulación Fúngica de la Expresión Génica , Genes Reguladores/genética , Neurospora crassa/genética , Proteínas de Saccharomyces cerevisiae , Azufre/metabolismo , Arilsulfatasas/genética , Secuencia de Bases , Cistationina gamma-Liasa , Proteínas de Unión al ADN , Represión Enzimática/genética , Prueba de Complementación Genética , Leucina Zippers , Sustancias Macromoleculares , Datos de Secuencia Molecular , Regiones Promotoras Genéticas/genética , Proteínas Recombinantes de Fusión/genética , Factores de Transcripción , Transcripción Genética , Transformación Genética , Tubulina (Proteína)/genética
10.
Mol Cell Biol ; 15(4): 1915-22, 1995 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-7891685

RESUMEN

The expression of gluconeogenic fructose-1,6-bisphosphatase (encoded by the FBP1 gene) depends on the carbon source. Analysis of the FBP1 promoter revealed two upstream activating elements, UAS1FBP1 and UAS2FBP1, which confer carbon source-dependent regulation on a heterologous reporter gene. On glucose media neither element was activated, whereas after transfer to ethanol a 100-fold derepression was observed. This gene activation depended on the previously identified derepression genes CAT1 (SNF1) (encoding a protein kinase) and CAT3 (SNF4) (probably encoding a subunit of Cat1p [Snf1p]). Screening for mutations specifically involved in UAS1FBP1 derepression revealed the new recessive derepression mutation cat8. The cat8 mutants also failed to derepress UAS2FBP1, and these mutants were unable to grow on nonfermentable carbon sources. The CAT8 gene encodes a zinc cluster protein related to Saccharomyces cerevisiae Gal4p. Deletion of CAT8 caused a defect in glucose derepression which affected all key gluconeogenic enzymes. Derepression of glucose-repressible invertase and maltase was still normally regulated. A CAT8-lacZ promoter fusion revealed that the CAT8 gene itself is repressed by Cat4p (Mig1p). These results suggest that gluconeogenic genes are derepressed upon binding of Cat8p, whose synthesis depends on the release of Cat4p (Mig1p) from the CAT8 promoter. However, gluconeogenic promoters are still glucose repressed in cat4 mutants, which indicates that in addition to its transcription, the Cat8p protein needs further activation. The observation that multicopy expression of CAT8 reverses the inability of cat1 and cat3 mutants to grow on ethanol indicates that Cat8p might be the substrate of the Cat1p/Cat3p protein kinase.


Asunto(s)
Proteínas Portadoras , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Genes Fúngicos/genética , Gluconeogénesis/genética , Proteínas Represoras , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Transactivadores , Proteínas Quinasas Activadas por AMP , Secuencia de Aminoácidos , Secuencia de Bases , Clonación Molecular , Análisis Mutacional de ADN , Proteínas de Unión al ADN/metabolismo , Represión Enzimática/genética , Fructosa-Bifosfatasa/biosíntesis , Fructosa-Bifosfatasa/genética , Genes Reporteros , Glucosa/farmacología , Modelos Genéticos , Datos de Secuencia Molecular , Regiones Promotoras Genéticas/genética , Proteínas Quinasas/metabolismo , Proteínas Serina-Treonina Quinasas/metabolismo , Homología de Secuencia de Aminoácido , Factores de Transcripción/metabolismo , Activación Transcripcional , Dedos de Zinc
11.
Mol Biol Cell ; 9(7): 1675-82, 1998 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-9658163

RESUMEN

The recessive mouse mutant Mpv17 is characterized by the development of early-onset glomerulosclerosis, concomitant hypertension, and structural alterations of the inner ear. The primary cause of the disease is the loss of function of the Mpv17 protein, a peroxisomal gene product involved in reactive oxygen metabolism. In our search of a common mediator exerting effects on several aspects of the phenotype, we discovered that the absence of the Mpv17 gene product causes a strong increase in matrix metalloproteinase 2 (MMP-2) expression. This was seen in the kidney and cochlea of Mpv17-negative mice as well as in tissue culture cells derived from these animals. When these cells were transfected with the human Mpv17 homolog, an inverse causal relationship between Mpv17 and MMP-2 expression was established. These results indicate that the Mpv17 protein plays a crucial role in the regulation of MMP-2 and suggest that enhanced MMP-2 expression might mediate the mechanisms leading to glomerulosclerosis, inner ear disease, and hypertension in this model.


Asunto(s)
Oído Interno/metabolismo , Fibroblastos/metabolismo , Gelatinasas/biosíntesis , Regulación de la Expresión Génica , Glomeruloesclerosis Focal y Segmentaria/genética , Riñón/metabolismo , Proteínas de la Membrana , Metaloendopeptidasas/biosíntesis , Proteínas/genética , Animales , Células Cultivadas , Cóclea/enzimología , Cóclea/metabolismo , Oído Interno/enzimología , Activación Enzimática/genética , Represión Enzimática/genética , Fibroblastos/enzimología , Genes Recesivos , Glomeruloesclerosis Focal y Segmentaria/enzimología , Humanos , Riñón/citología , Riñón/enzimología , Metaloproteinasa 2 de la Matriz , Ratones , Ratones Mutantes , Biosíntesis de Proteínas
12.
Mol Biol (Mosk) ; 40(6): 1047-54, 2006.
Artículo en Ruso | MEDLINE | ID: mdl-17209433

RESUMEN

Lung cancer is one of the most frequent neoplasia in the Russia, the United States and Europe. This cancer is associated with functional activity changes of many genes. In the present study TIMP3, DAPK1 and AKR1B10 genes transcription analysis of squamous cell lung cancer specimens was carried out using reverse transcription-PCR. Substantial increasing of AKR1B10 transcription level is revealed in 80% tumor samples. TIMP3 and DAPK1 transcription level is considerably decreased in 76 and 72% tumor specimens, accordingly. These results may point out that all three genes are important for squamous cell lung cancer tumorogenesis while AKR1B10 is potential oncogene whereas TIMP3 and DAPK1 are potential tumor suppressor genes. We suggest that revealed substantial transcription level-changes of investigated genes may be used for oncodiagnostics.


Asunto(s)
Aldehído Reductasa/genética , Proteínas Reguladoras de la Apoptosis/genética , Proteínas Quinasas Dependientes de Calcio-Calmodulina/genética , Carcinoma de Pulmón de Células no Pequeñas/genética , Neoplasias Pulmonares/genética , Inhibidor Tisular de Metaloproteinasa-3/genética , Adulto , Anciano , Aldehído Reductasa/biosíntesis , Aldo-Ceto Reductasas , Proteínas Reguladoras de la Apoptosis/biosíntesis , Proteínas Quinasas Dependientes de Calcio-Calmodulina/biosíntesis , Carcinoma de Pulmón de Células no Pequeñas/enzimología , Proteínas Quinasas Asociadas a Muerte Celular , Inducción Enzimática/genética , Represión Enzimática/genética , Femenino , Regulación Neoplásica de la Expresión Génica , Humanos , Neoplasias Pulmonares/enzimología , Masculino , Persona de Mediana Edad , Inhibidor Tisular de Metaloproteinasa-3/biosíntesis , Transcripción Genética
13.
Cancer Res ; 57(17): 3672-7, 1997 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-9288770

RESUMEN

The mechanism whereby the DNA repair protein O6-methylguanine-DNA methyltransferase (MGMT) is silenced in repair-deficient (Mer-) human tumor cells is unknown. The role of methylation of the 5' CpG island in MGMT gene suppression is controversial. Although we previously showed by restriction enzyme analysis that CpG methylation in this region was associated with gene suppression, methylation at such sites was generally incomplete, suggesting heterogeneity. To clarify this issue, we have unequivocally defined the methylation status of every CpG by genomic sequencing of individual cloned copies of bisulfite-modified DNA. The region from -249 to +259 at the transcription start site was virtually methylation free in HT29 cells (Mer+), whereas in BE or HeLa S3 cells (Mer-), this region was substantially methylated in every DNA copy, with "hot spots" from -249 to -103 and from +107 to +196. Up-regulation of MGMT in HeLa S3 cells induced by 5-azacytidine was accompanied by progressive demethylation and the appearance of totally unmethylated copies of DNA. We conclude that, in Mer- cells, the MGMT promoter contains specific CpG methylation hot spots that are tightly linked to and are potential markers of gene silencing.


Asunto(s)
Islas de CpG/genética , Metilación de ADN , Metiltransferasas/genética , Represión Enzimática/genética , Regulación Enzimológica de la Expresión Génica/genética , Regulación Neoplásica de la Expresión Génica/genética , Células HT29 , Células HeLa , Humanos , Metiltransferasas/metabolismo , O(6)-Metilguanina-ADN Metiltransferasa , Análisis de Secuencia de ADN , Transcripción Genética , Células Tumorales Cultivadas
14.
Genetics ; 137(3): 689-700, 1994 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-8088514

RESUMEN

The yeast Snf1p kinase is required for normal expression of many genes involved in utilization of non-glucose carbon. Snf1p is known to associate with several proteins. One is Sip1p, a protein that becomes phosphorylated in the presence of Snf1p and thus is a candidate Snf1p kinase substrate. We have isolated the SIP1 gene as a multicopy suppressor of the gal83-associated defect in glucose repression of GAL gene expression. Multicopy SIP1 also suppressed the gal82-associated defect in glucose repression, suggesting that SIP1, GAL83 and GAL82 function interdependently. Multicopy SIP1 gene reduces GAL1, GAL2, GAL7 and GAL10 gene expression three- to fourfold in cells grown in the presence of glucose but has no effect in cells grown on nonrepressing carbon. Sip1-deletion cells exhibited a two- to threefold increase in GAL gene expression compared to wild-type cells when grown on glucose. These studies show that SIP1 is a catabolite repression-specific negative regulator of GAL gene expression. Northern analysis revealed two SIP1 transcripts whose relative abundance changed with carbon source. Western blots revealed that Sip1p abundance is not markedly affected by carbon source, suggesting that Sip1p may be regulated post-translationally.


Asunto(s)
Proteínas Portadoras , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Genes Fúngicos , Genes Supresores , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/enzimología , Proteínas Quinasas Activadas por AMP , Secuencia de Bases , Represión Enzimática/genética , Proteínas Fúngicas/metabolismo , Galactoquinasa/biosíntesis , Galactosa/metabolismo , Eliminación de Gen , Glucosa/metabolismo , Datos de Secuencia Molecular , Familia de Multigenes , Proteínas Quinasas/metabolismo , Proteínas Serina-Treonina Quinasas/metabolismo , Proteínas Represoras/genética , Mapeo Restrictivo , Saccharomyces cerevisiae/genética , Transducción de Señal/genética , Especificidad por Sustrato , Factores de Transcripción/metabolismo
15.
Genetics ; 149(2): 509-21, 1998 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-9611170

RESUMEN

Seed dormancy and germination in higher plants are partially controlled by the plant hormones abscisic acid (ABA) and gibberellic acid (GA). ABA establishes dormancy during embryo maturation, whereas GA breaks dormancy and induces germination. Previous attempts to identify GA response genes were confounded because GA mutants are not expected to germinate and, unlike GA auxotrophs, should fail to be rescued by exogenous GA. Here, we describe a screen for suppressors of the ABA-insensitive mutant ABI1-1 that enriches for GA auxotrophs and GA-insensitive mutants. The vast majority (76%) of the suppressors of ABI1-1 strongly resemble GA auxotrophs in that they are severely dwarfed and have dark green foliage and flowers with underdeveloped petals and stamen. Three isolates were alleles of the GA auxotroph ga1. The remaining severe dwarves were not rescued by GA and belong to a single complementation group that we designate sly1 (Sleepy 1). The alleles of sly1 identified are the first recessive GA-insensitive mutations to reflect the full spectrum of GA-associated phenotypes, including the failure to germinate in the absence of the ABI1-1 lesion. Thus, we postulate that SLY1 is a key factor in GA reception.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis/enzimología , Arabidopsis/genética , Giberelinas/farmacología , Fosfoproteínas Fosfatasas/biosíntesis , Fosfoproteínas Fosfatasas/genética , Supresión Genética , Ácido Abscísico/genética , Ácido Abscísico/fisiología , Alelos , Arabidopsis/crecimiento & desarrollo , Resistencia a Medicamentos/genética , Represión Enzimática/efectos de los fármacos , Represión Enzimática/genética , Regulación Enzimológica de la Expresión Génica/efectos de los fármacos , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Germinación/genética , Giberelinas/biosíntesis , Fenotipo , Supresión Genética/efectos de los fármacos
16.
Histol Histopathol ; 20(1): 53-7, 2005 01.
Artículo en Inglés | MEDLINE | ID: mdl-15578422

RESUMEN

This paper describes a polymer site-specific delivery system containing human growth hormone in an in vivo model of scarring in the diabetic state. Copolymer discs with the hormone were introduced into incisions made in rats previously injected with streptozotocin in order to induce diabetes. Tissue specimens for evaluation were obtained at 3, 7 or 10 days after the procedure. Study groups were healthy rats and diabetic rats untreated or treated with/without the hormone. Histological sections were prepared for light microscopy examination of wound zones. Three and 7 days after surgery, polymer remains could be observed in the subcutaneous tissue. These remnants induced a moderate foreign body reaction. The number of macrophages detected was directly related to neovessel formation and metalloelastase expression. The CD4+/CD8+ ratio was low during the initial follow up stages (3 and 7 days) in untreated diabetic rats, yet an increased ratio corresponding to areas around the polymer remains was noted in the animals treated with copolymer loaded with the growth hormone. Copolymer is biodegradable in vivo and may be used as a vehicle for the slow release of active substances. The presence of the hormone at the site of skin injury induces cell proliferation and enhances the repair process.


Asunto(s)
Cicatriz/metabolismo , Diabetes Mellitus Experimental/metabolismo , Sustancias de Crecimiento/farmacología , Hormona de Crecimiento Humana/farmacología , Inflamación/metabolismo , Animales , Modelos Animales de Enfermedad , Represión Enzimática/genética , Represión Enzimática/fisiología , Humanos , Masculino , Metaloproteinasa 12 de la Matriz , Metaloendopeptidasas/biosíntesis , Metaloendopeptidasas/genética , Neovascularización Fisiológica/efectos de los fármacos , Ratas , Ratas Wistar
17.
Gene ; 118(1): 13-9, 1992 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-1511875

RESUMEN

Transcriptional regulation of the put operon is mediated by a unique mechanism involving autogenous regulation by the PutA protein, a membrane-associated dehydrogenase. The 420-bp put control region contains the putP and putA promoters, multiple operator sites, multiple catabolite repression protein binding sites, and several potential integration host factor (IHF)-binding sites (ihf). In this study, we show that IHF facilitates repression of the put operon in vivo, and IHF binds specifically to two ihf sites in the put control region in vitro. DNA gyrase mutants that alter the degree of chromosomal supercoiling do not affect put regulation, indicating that the effect of IHF on put expression is in this case independent of supercoiling.


Asunto(s)
Proteínas Bacterianas/genética , Represión Enzimática/genética , Operón/genética , Prolina/metabolismo , Secuencias Reguladoras de Ácidos Nucleicos/genética , Salmonella typhimurium/genética , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Secuencia de Bases , ADN Bacteriano/metabolismo , Proteínas de Unión al ADN/metabolismo , Regulación Bacteriana de la Expresión Génica , Factores de Integración del Huésped , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , Regiones Operadoras Genéticas/genética , Regiones Promotoras Genéticas/genética , Homología de Secuencia de Ácido Nucleico
18.
Front Biosci ; 7: a126-34, 2002 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-12045007

RESUMEN

The availability of human genome sequences provides life scientists and biomedical engineers with a challenging opportunity to develop computational and experimental tools for quantitatively analyzing biological processes. In response to a growing need to integrate experimental mRNA expression data with human genome sequences, we present here a unique analysis named "Promoter-Based Estimation (PROBE)" analysis. The PROBE analysis is "systems analysis" of transcriptional processes using control and estimation theories. A linear model was built in order to estimate the mRNA levels of a group of genes from their regulatory DNA sequences. The model was also used to interpret two independent datasets in skeletal tissues. The results demonstrated that the mRNA levels of a family of matrix metalloproteinases can be modeled from a distribution of cis-acting elements on regulatory DNA sequences. The model accurately predicted a stimulatory role of cis-acting elements such as AP1, NFY, PEA3, and Sp1 as well as an inhibitory role of AP2. These predictions are consistent with biological observations, and a specific assay for testing such predictions is proposed. Although eukaryotic transcription is a complex mechanism, the two examples presented here support the potential use of the described analysis for elucidating the functional significance of DNA regulatory elements.


Asunto(s)
Huesos/enzimología , Biología Computacional/métodos , Metaloproteinasas de la Matriz/biosíntesis , ARN Mensajero/biosíntesis , Algoritmos , Biología Computacional/estadística & datos numéricos , Bases de Datos Genéticas , Inducción Enzimática/genética , Represión Enzimática/genética , Genes Reguladores/genética , Variación Genética/genética , Genoma Humano , Humanos , Modelos Lineales , Metaloproteinasas de la Matriz/genética , Modelos Genéticos , Sensibilidad y Especificidad , Transcripción Genética/genética
19.
J Mol Endocrinol ; 19(2): 99-107, 1997 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-9343302

RESUMEN

We have investigated the mechanisms whereby lipogenesis is markedly suppressed in adipose tissue depots of lactating sheep. Expression of the gene encoding acetyl-CoA carboxylase (ACC), the flux-determining enzyme of the lipogenic pathway, is reduced approximately threefold in both omental and subcutaneous adipose tissue depots during late pregnancy and remains so into lactation when compared with non-pregnant, non-lactating animals. By comparison, total ACC enzyme activity in these adipose depots is suppressed approximately 25- to 30-fold in lactation. Culture of explants from the subcutaneous depot of lactating sheep with insulin plus dexamethasone for 72 h resulted in an approximately sevenfold increase in ACC mRNA, a fivefold increase in total enzyme activity and a marked increase in the proportion of the enzyme in the active state when compared with explants cultured with no added hormones for the same period. However, there was a lag of between 32 and 48 h before marked induction of any of these parameters by insulin plus dexamethasone was observed. Induction of the alpha-tubulin gene paralleled that of the ACC gene, suggesting that cytoskeletal rearrangements are associated with the aquisition of sensitivity to insulin plus dexamethasone. These results demonstrate that the reduction in lipogenic capacity in ovine adipose tissue during lactation is related to repression of the ACC gene, both at the level of steady-state mRNA abundance and possibly at translation, as well as to suppression of the mechanisms that regulate the proportion of ACC in the active state, and these are further related to the marked insensitivity of these parameters to insulin plus dexamethasone in vitro.


Asunto(s)
Acetil-CoA Carboxilasa/genética , Tejido Adiposo/efectos de los fármacos , Tejido Adiposo/enzimología , Insulina/farmacología , Lactancia/efectos de los fármacos , Lactancia/genética , Acetil-CoA Carboxilasa/biosíntesis , Acetil-CoA Carboxilasa/efectos de los fármacos , Tejido Adiposo/fisiología , Animales , Técnicas de Cultivo , Represión Enzimática/efectos de los fármacos , Represión Enzimática/genética , Femenino , Regulación Enzimológica de la Expresión Génica/efectos de los fármacos , Lactancia/metabolismo , Lípidos/biosíntesis , Embarazo , Ovinos
20.
Mol Biochem Parasitol ; 138(2): 165-70, 2004 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-15555728

RESUMEN

We describe the successful use of RNA interference (RNAi) to investigate gene function in the human filarial parasite Onchocerca volvulus third-stage larvae (L3). We targeted two specific gene products, the O. volvulus cathepsin L (Ov-CPL) and cathepsin Z-like (Ov-CPZ) cysteine proteases, which were proposed to function during O. volvulus L3 molting. We show that fluorescent-labeled Cy3-dsRNA corresponding to cpl or cpz regions encoding the mature enzymes can enter the larvae. The molting rate of larvae treated overnight with 0.5 mg ml(-1) cpl was reduced by 92% and 86% in comparison to normal control worms. It appeared that although the larvae started the molting process the last stage of molting, ecdysis was inhibited. The effect was gene specific, as larvae that did not molt in the presence of cpl or cpz dsRNA expressed the other cysteine protease, CPZ and CPL, respectively. This was confirmed by immunoelectron microscopy using antibodies directed against each enzyme. Our present study validate conclusively that both enzymes are essential for the molting of O. volvulus L3 to fourth-stage larvae. We also confirmed that the activity of the enzymes is specific to the changes that occur during the molting process on days 1-3, when the separation between the cuticles is in progress. The development of RNAi in O. volvulus L3 could further help study many of the abundant L3 and molting L3 genes identified through the filarial genome project, many of which, although have no attributed function, were identified as vaccine candidates or potential drug targets.


Asunto(s)
Catepsinas/fisiología , Cisteína Endopeptidasas/fisiología , Muda , Onchocerca volvulus/enzimología , Onchocerca volvulus/crecimiento & desarrollo , Interferencia de ARN , Animales , Secuencia de Bases , Catepsina K , Catepsina L , Catepsina Z , Catepsinas/genética , Cisteína Endopeptidasas/genética , Represión Enzimática/genética , Genes de Helminto , Larva/enzimología , Larva/genética , Larva/crecimiento & desarrollo , Microscopía Electrónica , Microscopía Inmunoelectrónica , Datos de Secuencia Molecular , Onchocerca volvulus/efectos de los fármacos , Onchocerca volvulus/genética , ARN Bicatenario/genética , ARN Bicatenario/metabolismo , Piel/ultraestructura
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