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1.
J Sci Food Agric ; 104(10): 6186-6195, 2024 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-38459923

RESUMEN

BACKGROUND: Solid-state fermentation (SSF) has been widely used in the processing of sorghum grain (SG) because it can produce products with improved sensory characteristics. To clarify the influence of different microbial strains on the SSF of SG, especially on the polyphenols content and composition, Lactiplantibacillus plantarum, Saccharomyces cerevisiae, Rhizopus oryzae, Aspergillus oryzae, and Neurospora sitophila were used separately and together for SSF of SG. Furthermore, the relationship between the dynamic changes in polyphenols and enzyme activity closely related to the metabolism of polyphenols has also been measured and analyzed. Microstructural changes observed after SSF provide a visual representation of the SSF on the SG. RESULTS: After SSF, tannin content (TC) and free phenolic content (FPC) were decreased by 56.36% and 23.48%, respectively. Polyphenol oxidase, ß-glucosidase and cellulase activities were increased 5.25, 3.27, and 45.57 times, respectively. TC and FPC were negatively correlated with cellulase activity. A positive correlation between FPC and xylanase activity after 30 h SSF became negative after 48 h SSF. The SG surface was fragmented and porous, reducing the blocking effect of cortex. CONCLUSION: Cellulase played a crucial role in promoting the degradation of tannin (antinutrient) and phenolic compounds. Xylanase continued to release flavonoids while microbial metabolism consumed them with the extension of SSF time. SSF is an effective way to improve the bioactivity and processing characteristics of SG. © 2024 Society of Chemical Industry.


Asunto(s)
Catecol Oxidasa , Fermentación , Polifenoles , Saccharomyces cerevisiae , Sorghum , Sorghum/química , Sorghum/metabolismo , Polifenoles/metabolismo , Polifenoles/química , Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/química , Catecol Oxidasa/metabolismo , Rhizopus/metabolismo , Rhizopus/enzimología , Taninos/metabolismo , Taninos/análisis , Taninos/química , Aspergillus oryzae/metabolismo , Aspergillus oryzae/enzimología , Celulasa/metabolismo , Celulasa/química , Neurospora/metabolismo , Manipulación de Alimentos/métodos , beta-Glucosidasa/metabolismo , Semillas/química , Semillas/metabolismo , Semillas/microbiología , Bacterias/metabolismo , Bacterias/clasificación , Bacterias/enzimología , Bacterias/aislamiento & purificación , Fenoles/metabolismo , Fenoles/química , Fenoles/análisis
2.
Biotechnol Lett ; 43(9): 1921-1932, 2021 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-34302564

RESUMEN

OBJECTIVES: Cold-active lipases which show high specific activity at low temperatures are attractive in industrial applications in terms of product stability and energy saving. We aimed to identify novel cold-active lipase suitable for oleates synthesis and bread making. RESULTS: A novel lipase gene (RmLipA) from Rhizopus microsporus was cloned and heterologously expressed in Pichia pastoris. The encoding sequence displayed 75% identity to the lipase from R. niveus. The highest extracellular lipase activity of 7931 U/mL was achieved in a 5-L fermentation. The recombinant enzyme (RmLipA) was optimally active at pH 8.0 and 20-25 °C, respectively, and stable over a wide pH range of 2.0-11.0. The enzyme was a cold-active lipase, exhibiting > 80% of its maximal activity at 0 °C. RmLipA was a sn-1,3 regioselective lipase, and preferred to hydrolyze pNP esters and triglycerides with relatively long chain fatty acids. RmLipA synthesized various oleates using oleic acid and different alcohols as substrates (> 95%). Moreover, it significantly improved the quality of bread by increasing its specific volume (21.7%) and decreasing its crumb firmness (28.6%). CONCLUSIONS: A novel cold-active lipase gene from R. microsporus was identified, and its application potentials were evaluated. RmLipA should be a potential candidate in oleates synthesis and bread making industries.


Asunto(s)
Lipasa/metabolismo , Ácido Oléico/metabolismo , Rhizopus/enzimología , Saccharomycetales/crecimiento & desarrollo , Técnicas de Cultivo Celular por Lotes , Pan/análisis , Clonación Molecular , Frío , Activación Enzimática , Fermentación , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Concentración de Iones de Hidrógeno , Lipasa/genética , Rhizopus/genética , Saccharomycetales/genética
3.
Prep Biochem Biotechnol ; 50(3): 226-233, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-31661372

RESUMEN

Traditionally, chymosin has been used for milk-clotting, but this naturally occurring enzyme is in short supply and its use has raised religious and ethical concerns. Because milk-clotting peptidases are a promising substitute for chymosin in cheese preparation, there is a need to find and test the specificity of these enzymes. Here, we evaluated the milk-clotting properties of an aspartic peptidase secreted by Rhizopus microsporus. The molecular mass of this enzyme was estimated at 36 kDa and Pepstatin A was determined to be an inhibitor. Optimal activity occurred at a pH of 5.5 and a temperature range of 50-60 °C, but the peptidase was stable in the pH range of 4-7 and a temperature as low as 45 °C. Proteolytic activity was significantly reduced in the presence of Cu2+ and Al3+. When enzyme substrates based on FRET were used, this peptidase exhibited the highest catalytic efficiency for Abz-KNRSSKQ-EDDnp (4,644 ± 155 mM-1.s-1), Abz-KLRSSNQ-EDDnp (3,514 ± 130 mM-1.s-1), and Abz-KLRQSKQ-EDDnp (3,068 ± 386 mM-1.s-1). This study presents a promising peptidase for use in cheese making, due to its high stability in the presence of Ca2+ and broad pH range of 4-7, in addition to its ability to efficiently clot milk.


Asunto(s)
Proteasas de Ácido Aspártico/química , Proteínas Fúngicas/química , Leche/química , Rhizopus/enzimología , Animales , Bovinos , Concentración de Iones de Hidrógeno
4.
Biochemistry ; 58(38): 3943-3954, 2019 09 24.
Artículo en Inglés | MEDLINE | ID: mdl-31436959

RESUMEN

Members of an important group of industrial enzymes, Rhizopus lipases, exhibit valuable hydrolytic features that underlie their biological functions. Particularly important is their N-terminal polypeptide segment (NTPS), which is required for secretion and proper folding but is removed in the process of enzyme maturation. A second common feature of this class of lipases is the α-helical "lid", which regulates the accessibility of the substrate to the enzyme active site. Some Rhizopus lipases also exhibit "interfacial activation" by micelle and/or aggregate surfaces. While it has long been recognized that the NTPS is critical for function, its dynamic features have frustrated efforts to characterize its structure by X-ray crystallography. Here, we combine nuclear magnetic resonance spectroscopy and X-ray crystallography to determine the structure and dynamics of Rhizopus chinensis lipase (RCL) with its 27-residue NTPS prosequence (r27RCL). Both r27RCL and the truncated mature form of RCL (mRCL) exhibit biphasic interfacial activation kinetics with p-nitrophenyl butyrate (pNPB). r27RCL exhibits a substrate binding affinity significantly lower than that of mRCL due to stabilization of the closed lid conformation by the NTPS. In contrast to previous predictions, the NTPS does not enhance lipase activity by increasing surface hydrophobicity but rather inhibits activity by forming conserved interactions with both the closed lid and the core protein structure. Single-site mutations and kinetic studies were used to confirm that the NTPS serves as internal competitive inhibitor and to develop a model of the associated process of interfacial activation. These structure-function studies provide the basis for engineering RCL lipases with enhanced catalytic activities.


Asunto(s)
Proteínas Fúngicas/química , Microbiología Industrial , Lipasa/química , Péptidos/química , Rhizopus/enzimología , Secuencia de Aminoácidos , Cristalografía por Rayos X , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Hidrólisis , Cinética , Lipasa/genética , Lipasa/metabolismo , Resonancia Magnética Nuclear Biomolecular , Péptidos/genética , Péptidos/metabolismo , Relación Estructura-Actividad , Especificidad por Sustrato
5.
Am J Transplant ; 19(4): 1224-1228, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30282120

RESUMEN

Transplant tourism, which is the practice of traveling to other countries for transplant, continues to be a major problem worldwide. We describe a patient who traveled to Pakistan and underwent commercial kidney transplant. He developed life-threatening infections from New Delhi metallo-ß-lactamase-1-producing Enterobacter cloacae and Rhizopus oryzae, resulting in a necrotizing kidney allograft infection and subsequent external iliac artery rupture. He survived after a prolonged course of nonstandardized antimicrobial therapy, including a combination of aztreonam and ceftazidime-avibactam, and aggressive surgical debridement with allograft nephrectomy. The early timing of infection with these unusual organisms localized to the allograft suggests contamination and substandard care at the time of transplant. This case highlights the challenges of caring for these infections and serves as a cautionary tale for the potential complications of commercial transplant tourism.


Asunto(s)
Infecciones Bacterianas/complicaciones , Enterobacter cloacae/enzimología , Trasplante de Riñón , Turismo Médico , Micosis/complicaciones , Rhizopus/enzimología , beta-Lactamasas/aislamiento & purificación , Antiinfecciosos/administración & dosificación , Infecciones Bacterianas/tratamiento farmacológico , Infecciones Bacterianas/microbiología , Humanos , Masculino , Persona de Mediana Edad , Micosis/microbiología
6.
Fungal Genet Biol ; 124: 1-7, 2019 03.
Artículo en Inglés | MEDLINE | ID: mdl-30562583

RESUMEN

Rhizopus delemar causes devastating mucormycosis in immunodeficient individuals. Despite its medical importance, R. delemar remains understudied largely due to the lack of available genetic markers, the presence of multiple gene copies due to genome duplication, and mitotically unstable transformants resulting from conventional and limited genetic approaches. The clustered regularly interspaced short palindromic repeat (CRISPR)-associated nuclease 9 (Cas9) system induces efficient homologous and non-homologous break points and generates individual and multiple mutant alleles without requiring selective marker genes in a wide variety of organisms including fungi. Here, we have successfully adapted this technology for inducing gene-specific single nucleotide (nt) deletions in two clinical strains of R. delemar: FGSC-9543 and CDC-8219. For comparative reasons, we first screened for spontaneous uracil auxotrophic mutants resistant to 5-fluoroorotic acid (5-FOA) and obtained one substitution (f1) mutationin the FGSC-9543 strain and one deletion (f2) mutation in the CDC-8219 strain. The f2 mutant was then successfully complemented with a pyrF-dpl200 marker gene. We then introduced a vector pmCas9:tRNA-gRNA that expresses both Cas9 endonuclease and pyrF-specific gRNA into FGSC-9543 and CDC-8219 strains and obtained 34 and 42 5-FOA resistant isolates, respectively. Candidate transformants were successively transferred eight times by propagating hyphal tips prior to genotype characterization. Sequencing of the amplified pyrF allele in all transformants tested revealed a single nucleotide (nt) deletion at the 4th nucleotide before the protospacer adjacent motif (PAM) sequence, which is consistent with CRISPR-Cas9 induced gene mutation through non-homologous end joining (NHEJ). Our study provides a new research tool for investigating molecular pathogenesis mechanisms of R. delemar while also highlighting the utilization of CRISPR-Cas9 technology for generating specific mutants of Mucorales fungi.


Asunto(s)
Mutación Puntual , Rhizopus/genética , Proteína 9 Asociada a CRISPR/genética , Sistemas CRISPR-Cas , Genes Fúngicos , Vectores Genéticos , Orotato Fosforribosiltransferasa/genética , Ácido Orótico/análogos & derivados , Ácido Orótico/farmacología , Rhizopus/efectos de los fármacos , Rhizopus/enzimología , Uracilo
7.
FEMS Yeast Res ; 19(6)2019 09 01.
Artículo en Inglés | MEDLINE | ID: mdl-31505595

RESUMEN

Microorganisms have evolved to produce specific end products for many reasons, including maintaining redox balance between NAD+ and NADH. The yeast Saccharomyces cerevisiae, for example, produces ethanol as a primary end product from glucose for the regeneration of NAD+. Engineered S. cerevisiae strains have been developed to ferment lignocellulosic sugars, such as xylose, to produce lactic acid by expression of a heterologous lactate dehydrogenase (ldhA from Rhizopus oryzae) without genetic perturbation to the native ethanol pathway. Surprisingly, the engineered yeast strains predominantly produce ethanol from glucose, but produce lactic acid as the major product from xylose. Here, we provide initial evidence that the shift in product formation from ethanol to lactic acid during xylose fermentation is at least partially dependent on the presence of functioning monocarboxylate transporter genes/proteins, including JEN1 and ADY2, which are downregulated and unstable in the presence of glucose, but upregulated/stable on xylose. Future yeast metabolic engineering studies may find the feedstock/carbon selection, such as xylose, an important step toward improving the yield of target end products.


Asunto(s)
L-Lactato Deshidrogenasa/metabolismo , Ácido Láctico/metabolismo , Proteínas de Transporte de Membrana/genética , Ingeniería Metabólica , Rhizopus/enzimología , Proteínas de Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Xilosa/metabolismo , Regulación hacia Abajo , Etanol/metabolismo , Fermentación , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Expresión Génica , Glucosa/metabolismo , L-Lactato Deshidrogenasa/genética , Transportadores de Ácidos Monocarboxílicos/genética , Rhizopus/genética , Saccharomyces cerevisiae/genética , Eliminación de Secuencia , Simportadores/genética , Transgenes
8.
Protein Expr Purif ; 163: 105443, 2019 11.
Artículo en Inglés | MEDLINE | ID: mdl-31185288

RESUMEN

The production of membrane-associated lipase from Rhizopus chinensis (RCL), which has a high ester synthesis activity and important potential applications, is difficult in heterologous expression system such as Escherichia coli and often leads to the formation of inclusion bodies. Here, we describe the soluble expression of mature RCL (mRCL) using maltose-binding protein (MBP) as a solubility-enhancing tag in the E. coli system. Although the MBP-mRCL fusion protein was soluble, mRCL was insoluble after removal of the MBP tag in E. coli BL21 (DE3). Using E. coli BL21 trxB (DE3) as an expression host, soluble mRCL was obtained and expression conditions were optimized. Furthermore, the ester synthesis activity of soluble mRCL was increased by detergent treatment and was found to be 3.5 and 1.5 times higher than those of the untreated enzyme and naturally occurring enzyme, respectively. Overall, this study provides a potential approach for producing active and soluble forms of eukaryotic lipases in a heterologous E. coli expression system.


Asunto(s)
Lipasa/biosíntesis , Rhizopus/enzimología , Clonación Molecular , Medios de Cultivo , Escherichia coli , Ésteres/metabolismo , Lipasa/genética , Lipasa/aislamiento & purificación , Proteínas de Unión a Maltosa/genética , Proteínas Recombinantes de Fusión/metabolismo , Rhizopus/genética
9.
Prep Biochem Biotechnol ; 49(9): 858-867, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31219401

RESUMEN

Cheese production is projected to reach 20 million metric tons by 2020, of which 33% is being produced using calf rennet (EC 3.4.23.4). There is shortage of calf rennet, and use of plant and microbial rennets, hydrolyze milk proteins non-specifically resulting in low curd yields. This study reports fungal enzymes obtained from cost effective medium, with minimal down streaming, whose activity is comparable with calf and Mucor rennet. Of the fifteen fungi that were screened, Mucor thermohyalospora (MTCC 1384) and Rhizopus azygosporus (MTCC 10195) exhibited the highest milk-clotting activity (MCA) of 18,383 ± 486 U/ml and 16,373 ± 558 U/ml, respectively. Optimization exhibited a 33% increase in enzyme production (30 g wheat bran containing 6% defatted soy meal at 30 °C, pH 7) for M. thermohyalospora. The enzyme was active from pH 5-10 and temperature 45-55 °C. Rhizopus azygosporus exhibited 31% increase in enzyme production (30 g wheat bran containing 4% defatted soy meal at 30 °C, pH 6) and the enzyme was active from pH 6-9 at 50 °C. Curd yields prepared from fungal enzyme extract decreased (5-9%), when compared with calf rennet and Mucor rennet. This study describes the potential of fungal enzymes, hitherto unreported, as a viable alternative to calf rennet.


Asunto(s)
Ácido Aspártico Endopeptidasas/metabolismo , Mucor/enzimología , Rhizopus/enzimología , Fermentación , Concentración de Iones de Hidrógeno , Microbiología Industrial/métodos , Mucor/metabolismo , Rhizopus/metabolismo , Especificidad por Sustrato , Temperatura
10.
Molecules ; 24(23)2019 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-31771200

RESUMEN

Lipases are among the most frequently used biocatalysts in organic synthesis, allowing numerous environmentally friendly and inexpensive chemical transformations. Here, we present a biomimetic strategy based on iron(III)-catalyzed oxidative coupling and selective ester monohydrolysis using lipases for the synthesis of unsymmetric biphenyl-based esters under mild conditions. The diverse class of biphenyl esters is of pharmaceutical and technical relevance. We explored the potency of a series of nine different lipases of bacterial, fungal, and mammalian origin on their catalytic activities to cleave biphenyl esters, and optimized the reaction conditions, in terms of reaction time, temperature, pH, organic solvent, and water-organic solvent ratios, to improve the chemoselectivity, and hence control the ratio of unsymmetric versus symmetric products. Elevated temperature and increased DMSO content led to an almost exclusive monohydrolysis by the four lipases Candida rugosa lipase (CRL), Mucor miehei lipase (MML), Rhizopus niveus lipase (RNL), and Pseudomonas fluorescens lipase (PFL). The study was complemented by in silico binding predictions to rationalize the observed differences in efficacies of the lipases to convert biphenyl esters. The optimized reaction conditions were transferred to the preparative scale with high yields, underlining the potential of the presented biomimetic approach as an alternative strategy to the commonly used transition metal-based strategies for the synthesis of diverse biphenyl esters.


Asunto(s)
Candida/enzimología , Ésteres/química , Lipasa/metabolismo , Mucor/enzimología , Pseudomonas fluorescens/enzimología , Rhizopus/enzimología , Proteínas Bacterianas/metabolismo , Mimetismo Biológico , Catálisis , Simulación por Computador , Proteínas Fúngicas/metabolismo , Concentración de Iones de Hidrógeno , Hidrólisis , Temperatura
11.
Anal Chem ; 90(22): 13341-13347, 2018 11 20.
Artículo en Inglés | MEDLINE | ID: mdl-30354058

RESUMEN

As is well-known, fungi are an important biocatalysis model of glucosylation and have been widely applied for bioactive compounds glucosylation mediated by the intracellular glucosytransferases (GTs). However, there is no efficient method for the real-time detection of GTs and the rapid isolation of the target fungi strains with the high expression of GTs. In the present work, we first developed a two-photon ratiometric fluorescent probe N-( n-butyl)-4-hydroxy-1,8-naphthalimide (NHN) for detecting the glucosyltransferases activity and intracellular imaging of GTs. Under UV light (365 nm), the transformed product of NHN mediated by intracellular glucosyltransferase displayed blue emission to guide the rapid isolation of fungal strains possessing overexpression of GTs from complex soil samples. Finally, by using the fluorescent probe, two target fungi were isolated and identified to be Rhizopus oryzae and Mucor circinelloides by molecular analysis, and they exhibited a robust capability for regio- and stereospecific O-glycosylation. Our results fully demonstrated that NHN may be a promising tool for guiding real-time GTs activity in fungal strains and even for developing natural fungal strains with GTs overexpression.


Asunto(s)
Colorantes Fluorescentes/química , Glucosiltransferasas/análisis , Naftalimidas/química , Pruebas de Enzimas/métodos , Colorantes Fluorescentes/síntesis química , Colorantes Fluorescentes/efectos de la radiación , Glicosilación , Rayos Infrarrojos , Microscopía Confocal/métodos , Microscopía Fluorescente/métodos , Mucor/enzimología , Mucor/aislamiento & purificación , Naftalimidas/síntesis química , Naftalimidas/efectos de la radiación , Rhizopus/enzimología , Rhizopus/aislamiento & purificación
12.
Protein Expr Purif ; 147: 1-12, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29452270

RESUMEN

Rhizopus oryzae lipase (ROL) is an important industrial enzyme limited in application due to its low production in native strains. Here, we used a new combined strategy to overexpress ROL in Pichia pastoris. An efficient method based on bio-brick was developed to construct a series of vectors harboring different copy numbers of ROL gene cassettes, which were then transformed into P. pastoris GS115 to generate a strain with specific copy numbers of ROL. An optimized gene-dosage recombinant strain of GS115/pAOα-5ROL 11# harboring five copies of ROL was screened, revealing production of the highest activity (2700 U/mL), which was 8-fold higher than that of the strain harboring one copy. The activity of GS115/pAOα-5ROL 11# was then enhanced to 3080 U/mL in a shaking flask under optimized culture conditions. Subsequently, the endoplasmic reticulum-associated protein-degradation-related genes Ubc1 or/and Hrd1 were co-expressed with ROL to further increase ROL expression. The activities of the recombinant strains, GS115/5ROL-Ubc1 22#, -Hrd1 15#, and -Hrd1-Ubc1 1#, were 4000 U/mL, 4200 U/mL, and 4750 U/mL, which was 29.9%, 36.4%, and 54.2% higher, respectively, than that observed in GS115/pAOα-5ROL 11#. Using the combined strategy, ROL expression was improved 15.8-fold, with maximum GS115/5ROL-Hrd1-Ubc1 1# activity reaching 33,900 U/mL via a sorbitol/methanol co-feeding strategy in a 3-L fermenter and resulting in a 1.65-, 1.26-, and 1.14-fold enhancement relative to the activities observed in strains GS115/pAOα-5ROL 11#, GS115/5ROL-Ubc1 22#, and GS115/5ROL-Hrd1 15#, respectively. These results indicated that heterologous overexpression of ROL in P. pastoris using this combined strategy is feasible for large-scale industrialization.


Asunto(s)
Proteínas Fúngicas/metabolismo , Lipasa/metabolismo , Proteínas Recombinantes/metabolismo , Rhizopus/enzimología , Degradación Asociada con el Retículo Endoplásmico/genética , Espacio Extracelular/enzimología , Fermentación , Proteínas Fúngicas/genética , Dosificación de Gen , Regulación Enzimológica de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Microbiología Industrial/métodos , Lipasa/genética , Pichia/genética , Rhizopus/genética , Enzimas Ubiquitina-Conjugadoras/genética , Enzimas Ubiquitina-Conjugadoras/metabolismo , Ubiquitina-Proteína Ligasas/genética , Ubiquitina-Proteína Ligasas/metabolismo
13.
Biochim Biophys Acta Gen Subj ; 1862(6): 1376-1388, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-29550433

RESUMEN

Mannan is one of the major constituent groups of hemicellulose, which is a renewable resource from higher plants. ß-Mannanases are enzymes capable of degrading lignocellulosic biomass. Here, an endo-ß-mannanase from Rhizopus microsporus (RmMan134A) was cloned and expressed. The recombinant RmMan134A showed maximal activity at pH 5.0 and 50 °C, and exhibited high specific activity towards locust bean gum (2337 U/mg). To gain insight into the substrate-binding mechanism of RmMan134A, four complex structures (RmMan134A-M3, RmMan134A-M4, RmMan134A-M5 and RmMan134A-M6) were further solved. These structures showed that there were at least seven subsites (-3 to +4) in the catalytic groove of RmMan134A. Mannose in the -1 subsite hydrogen bonded with His113 and Tyr131, revealing a unique conformation. Lys48 and Val159 formed steric hindrance, which impedes to bond with galactose branches. In addition, the various binding modes of RmMan134A-M5 indicated that subsites -2 to +2 are indispensable during the hydrolytic process. The structure of RmMan134A-M4 showed that mannotetrose only binds at subsites +1 to +4, and RmMan134A could therefore not hydrolyze mannan oligosaccharides with degree of polymerization ≤4. Through rational design, the specific activity and optimal conditions of RmMan134A were significantly improved. The purpose of this paper is to investigate the structure and function of fungal GH family 134 ß-1,4-mannanases, and substrate-binding mechanism of GH family 134 members.


Asunto(s)
Glicósidos/metabolismo , Mananos/metabolismo , Rhizopus/enzimología , beta-Manosidasa/química , beta-Manosidasa/metabolismo , Secuencia de Aminoácidos , Catálisis , Clonación Molecular , Cristalografía por Rayos X , Conformación Proteica , Homología de Secuencia , Especificidad por Sustrato
14.
Bioorg Chem ; 78: 210-219, 2018 08.
Artículo en Inglés | MEDLINE | ID: mdl-29602045

RESUMEN

We present an efficient approach to the synthesis of a series of glycyrrhetinic acid derivatives. Six derivatives, five of them new compounds, were obtained through chemoenzymatic reactions in very good to excellent yield. In order to find the optimal reaction conditions, the influence of various parameters such as enzyme source, nucleophile:substrate ratio, enzyme:substrate ratio, solvent and temperature was studied. The excellent results obtained by lipase catalysis made the procedure very efficient considering their advantages such as mild reaction conditions and low environmental impact. Moreover, in order to explain the reactivity of glycyrrhetinic acid and the acetylated derivative to different nucleophiles in the enzymatic reactions, molecular docking studies were carried out. In addition, one of the synthesized compounds exhibited remarkable antiviral activity against TK + and TK- strains of Herpes simplex virus type 1 (HSV-1), sensitive and resistant to acyclovir (ACV) treatment.


Asunto(s)
Antivirales/farmacología , Ácido Glicirretínico/farmacología , Herpesvirus Humano 1/efectos de los fármacos , Lipasa/metabolismo , Simulación del Acoplamiento Molecular , Aciclovir/farmacología , Antivirales/química , Antivirales/metabolismo , Biocatálisis , Candida/enzimología , Carica/enzimología , Relación Dosis-Respuesta a Droga , Eurotiales/enzimología , Ácido Glicirretínico/química , Ácido Glicirretínico/metabolismo , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Rhizomucor/enzimología , Rhizopus/enzimología , Relación Estructura-Actividad
15.
Biotechnol Lett ; 40(6): 973-979, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-29680932

RESUMEN

OBJECTIVE: To investigate the transcriptional regulation of cellobiose synthase (CBS) in Rhizopus stolonifer. RESULTS: Transcription factor XYR1 was identified as responsible for the activation of cbs. In comparison with wild-type R. stolonifer, the deletion of XYR1 resulted in transcriptional down-regulation of cbs by approximately 40%, while XYR1 over-expression increased cbs transcription up to 175%. The highest FPA activity (1.8 IU/ml) was obtained in the XYR1-overexpressing strain OExyr1 cultivated in a 2% (m/V) glucose media, corresponding to a 96% increase compared with that of the parent strain (0.92 IU/ml). Moreover, cellulase synthesis was inhibited after cbs-inactivation mutation in OExyr1. CONCLUSION: XYR1 directly activates the transcription of cbs to promote cellulase production in R. stolonifer utilizing glucose as a substrate.


Asunto(s)
Celobiosa/metabolismo , Celulasa/metabolismo , Proteínas Fúngicas/metabolismo , Regulación Fúngica de la Expresión Génica/genética , Glucosa/metabolismo , Factores de Transcripción/metabolismo , Biotecnología , Celobiosa/genética , Celulasa/genética , Proteínas Fúngicas/genética , Fenotipo , Rhizopus/enzimología , Rhizopus/genética , Factores de Transcripción/genética
16.
Bioprocess Biosyst Eng ; 41(12): 1827-1838, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30196441

RESUMEN

The methanol-glycerol co-feeding during the induction stage for heterologous protein production in Pichia pastoris has shown significant productive applications. Available model analysis applied to this dual-limited condition is scarce and normally does not consider the interaction effects between the substrates. In this work, a dual-limited growth model of P. pastoris considering an interactive kinetic effect was applied to an optimised fed-batch process production of heterologous Rhizopus oryzae lipase (ROL). In the proposed model, the growth kinetics on glycerol is fully expressed, whereas methanol kinetics is modulated by the co-metabolisation of glycerol, resulting in an enhancing effect of glycerol-specific growth rate. The modelling approach of fed-batch cultures also included the methanol volatilisation caused by the aeration that was found to be a not-negligible phenomenon. The model predicts the ability of P. pastoris to keep control of the methanol concentration in the broth during ROL-optimised production process in fed batch and fits satisfactorily the specific cell growth rate and ROL production. Implications of interaction effect are discussed applying the general procedure of modelling approach.


Asunto(s)
Proteínas Fúngicas/biosíntesis , Glicerol/farmacología , Lipasa/biosíntesis , Metanol/farmacología , Modelos Biológicos , Pichia/metabolismo , Rhizopus/genética , Proteínas Fúngicas/genética , Lipasa/genética , Pichia/genética , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Rhizopus/enzimología
17.
Int J Mol Sci ; 19(11)2018 Oct 28.
Artículo en Inglés | MEDLINE | ID: mdl-30373304

RESUMEN

This study is dedicated to efficiently produce Rhizopus oryzae lipase (ROL) by optimizing the expression of multiple expression-related helper proteins in Pichia pastoris. A series of engineered strains harboring different copy numbers of the ROL gene and different copies of the chaperone Pdi gene were first constructed to examine the influence of Pdi gene copy number on ROL production. The results showed that multiple copies of Pdi gene did not significantly improve ROL expression. Then, the effect of the co-overexpression of 10 expression-related helper proteins on ROL secretion was investigated by screening 20 colonies of each transformants. The data from shaking-flask fermentation suggested that Ssa4, Bmh2, Sso2, Pdi, Bip, Hac1, and VHb had positive effects on ROL expression. Subsequently, Ssa4, Bmh2, and Sso2, which all participate in vesicular trafficking and strongly promote ROL expression, were combined to further improve ROL production level. ROL activity of the screened strain GS115/5ROL-Ssa4-Sso2-Bmh2 4# attained 5230 U/mL. Furthermore, when the helper proteins Pdi, Bip, Hac1, and VHb were individually co-expressed with ROL in the strain GS115/5ROL-Ssa4-Sso2-Bmh2 4#, lipase activity increased to 5650 U/mL in the strain GS115/5ROL-Ssa4-Sso2-Bmh2-VHb 9#. Additionally, the maximum ROL activity of 41,700 U/mL was achieved in a 3 L bioreactor for high-density fermentation via a sorbitol⁻methanol co-feeding strategy, reaching almost twofold the value of the initial strain GS115/pAOα-5ROL 11#. Thus, the strategies in this study significantly increased ROL expression level, which is of great potential for the large-scale production of ROL in P. pastoris.


Asunto(s)
Proteínas Fúngicas/genética , Microbiología Industrial/métodos , Lipasa/genética , Pichia/genética , Rhizopus/enzimología , Proteínas Fúngicas/metabolismo , Lipasa/metabolismo , Pichia/metabolismo , Rhizopus/genética
18.
Chembiochem ; 18(3): 284-290, 2017 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-27905163

RESUMEN

Pathogenic fungi kill an estimated 1.3 million people each year. This number is predicted to rise as drug resistance spreads, thus antifungal drugs with novel modes of action are urgently required. Fungal endoglycoceramidase-related proteins 1 and 2 (EGCrP-1 and -2), which hydrolyse glucosylceramide and ergosteryl ß-glucoside, respectively, are important for fungal cell growth and have been identified as potential targets for drug development. A library of iminosugar derivatives was screened against EGCrP-1 and -2, and a number of competitive inhibitors with nanomolar affinities were identified. In addition, a mechanism-based inhibitor was shown to form a covalent derivative with EGCrP-2. Nine of the inhibitors were evaluated against Cryptococcus neoformans. Several showed growth inhibitory activity, but only against a C. neoformans strain lacking the outer fungal polysaccharide capsule; this implies that penetration into the cell is a significant handicap for these inhibitors. Pro-drug versions of these inhibitors could address this issue.


Asunto(s)
Cryptococcus neoformans/efectos de los fármacos , Inhibidores Enzimáticos/farmacología , Proteínas Fúngicas/antagonistas & inhibidores , Glicósido Hidrolasas/antagonistas & inhibidores , Cryptococcus neoformans/enzimología , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/metabolismo , Proteínas Fúngicas/metabolismo , Glicósido Hidrolasas/metabolismo , Cinética , Profármacos/química , Profármacos/metabolismo , Profármacos/farmacología , Rhizopus/enzimología
19.
Planta ; 246(4): 779-790, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28685294

RESUMEN

MAIN CONCLUSION: An eco-friendly cell wall digestion strategy was developed to enhance the availability of nutritionally important bio molecules of edible microalgae and exploit them for cloning, transformation, and expression of therapeutic proteins. Microalgae are the source for many nutritionally important bioactive compounds and potential drugs. Even though edible microalgae are rich in nutraceutical, bioavailability of all these molecules is very less due to their rigid recalcitrant cell wall. For example, the cell wall of Scenedesmus quadricauda CASA CC202 is made up of three layers comprising of rigid outer pectin and inner cellulosic layer separated by a thin middle layer. In the present investigation, a comprehensive method has been developed for the selective degradation of S. quadricauda CASA CC202 cell wall, by employing both mechanical and enzymatic treatments. The efficiency of cell wall removal was evaluated by measuring total reducing sugar (TRS), tannic acid-ferric chloride staining, calcoflour white staining, scanning electron microscopy (SEM), and Fourier transform infrared spectroscopy (FTIR) analysis. It was confirmed that the yield of TRS increased from 129.82 mg/g in 14 h from pectinase treatment alone to 352.44 mg/g by combined sonication and enzymatic treatment within 12 h. As a result, the combination method was found to be effective for the selective degradation of S. quadricauda CASA CC202 cell wall. This study will form a base for our future works, where this will help to enhance the digestibility and availability of nutraceutically important proteins.


Asunto(s)
Pared Celular/metabolismo , Celulosa/metabolismo , Pectinas/metabolismo , Scenedesmus/metabolismo , Aspergillus niger/enzimología , Pared Celular/ultraestructura , Celulasa/metabolismo , Proteínas Fúngicas/metabolismo , Concentración de Iones de Hidrógeno , Hidrólisis , Microalgas , Microscopía Electrónica de Rastreo , Poligalacturonasa/metabolismo , Rhizopus/enzimología , Scenedesmus/ultraestructura , Sonicación , Espectroscopía Infrarroja por Transformada de Fourier , Temperatura
20.
Appl Environ Microbiol ; 83(8)2017 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-28159792

RESUMEN

In the present study, two novel phenolic UDP glycosyltransferases (P-UGTs), UGT58A1 and UGT59A1, which can transfer sugar moieties from active donors to phenolic acceptors to generate corresponding glycosides, were identified in the fungal kingdom. UGT58A1 (from Absidia coerulea) and UGT59A1 (from Rhizopus japonicas) share a low degree of homology with known UGTs from animals, plants, bacteria, and viruses. These two P-UGTs are membrane-bound proteins with an N-terminal signal peptide and a transmembrane domain at the C terminus. Recombinant UGT58A1 and UGT59A1 are able to regioselectively and stereoselectively glycosylate a variety of phenolic aglycones to generate the corresponding glycosides. Phylogenetic analysis revealed the novelty of UGT58A1 and UGT59A1 in primary sequences in that they are distantly related to other UGTs and form a totally new evolutionary branch. Moreover, UGT58A1 and UGT59A1 represent the first members of the UGT58 and UGT59 families, respectively. Homology modeling and mutational analysis implied the sugar donor binding sites and key catalytic sites, which provided insights into the catalytic mechanism of UGT58A1. These results not only provide an efficient enzymatic tool for the synthesis of bioactive glycosides but also create a starting point for the identification of P-UGTs from fungi at the molecular level.IMPORTANCE Thus far, there have been many reports on the glycosylation of phenolics by fungal cells. However, no P-UGTs have ever been identified in fungi. Our study identified fungal P-UGTs at the molecular level and confirmed the existence of the UGT58 and UGT59 families. The novel sequence information on UGT58A1 and UGT59A1 shed light on the exciting and new P-UGTs hiding in the fungal kingdom, which would lead to the characterization of novel P-UGTs from fungi. Molecular identification of fungal P-UGTs not only is theoretically significant for a better understanding of the evolution of UGT families but also can be applied as a powerful tool in the glycodiversification of bioactive natural products for drug discovery.


Asunto(s)
Absidia/enzimología , Glicósidos/metabolismo , Glicosiltransferasas/genética , Glicosiltransferasas/metabolismo , Fenoles/metabolismo , Rhizopus/enzimología , Uridina Difosfato/metabolismo , Absidia/genética , Absidia/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Glicosilación , Glicosiltransferasas/química , Glicosiltransferasas/aislamiento & purificación , Familia de Multigenes , Filogenia , Rhizopus/genética , Rhizopus/metabolismo
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