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1.
Mol Imaging ; 10(2): 123-34, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21439257

RESUMO

Molecular imaging has moved to the forefront of drug development and biomedical research. The identification of appropriate imaging targets has become the touchstone for the accurate diagnosis and prognosis of human cancer. Particularly, cell surface- or membrane-bound proteins are attractive imaging targets for their aberrant expression, easily accessible location, and unique biochemical functions in tumor cells. Previously, we published a literature mining of potential targets for our in-house enzyme-mediated cancer imaging and therapy technology. Here we present a simple and integrated bioinformatics analysis approach that assembles a public cancer microarray database with a pathway knowledge base for ascertaining and prioritizing upregulated genes encoding cell surface- or membrane-bound proteins, which could serve imaging targets. As examples, we obtained lists of potential hits for six common and lethal human tumors in the prostate, breast, lung, colon, ovary, and pancreas. As control tests, a number of well-known cancer imaging targets were detected and confirmed by our study. Further, by consulting gene-disease and protein-disease databases, we suggest a number of significantly upregulated genes as promising imaging targets, including cell surface-associated mucin-1, prostate-specific membrane antigen, hepsin, urokinase plasminogen activator receptor, and folate receptors. By integrating pathway analysis, we are able to organize and map "focused" interaction networks derived from significantly dysregulated entity pairs to reflect important cellular functions in disease processes. We provide herein an example of identifying a tumor cell growth and proliferation subnetwork for prostate cancer. This systematic mining approach can be broadly applied to identify imaging or therapeutic targets for other human diseases.


Assuntos
Acesso à Informação , Biologia Computacional/métodos , Bases de Dados Genéticas , Diagnóstico por Imagem/métodos , Regulação Neoplásica da Expressão Gênica , Genoma Humano/genética , Neoplasias/genética , Proliferação de Células , Perfilação da Expressão Gênica , Redes Reguladoras de Genes/genética , Humanos , Proteínas de Neoplasias/genética , Proteínas de Neoplasias/metabolismo , Neoplasias/patologia , Ligação Proteica
2.
Radiology ; 258(3): 889-905, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21163918

RESUMO

This special report aims to inform the medical community about the many challenges involved in managing radiation exposure in a way that maximizes the benefit-risk ratio. The report discusses the state of current knowledge and key questions in regard to sources of medical imaging radiation exposure, radiation risk estimation, dose reduction strategies, and regulatory options.


Assuntos
Diagnóstico por Imagem/efeitos adversos , Lesões por Radiação/prevenção & controle , Fluoroscopia/efeitos adversos , Humanos , Neoplasias Induzidas por Radiação/prevenção & controle , Doses de Radiação , Proteção Radiológica , Radiografia Intervencionista/efeitos adversos , Medição de Risco , Fatores de Risco , Fatores Sexuais
3.
Anal Biochem ; 417(2): 242-6, 2011 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-21741945

RESUMO

The widely used agarose gel electrophoresis method for assessing radiation-induced single-strand-break (SSB) yield in plasmid DNA involves measurement of the fraction of relaxed-circular (C) form that migrates independently from the intact supercoiled (SC) form. We rationalized that this method may underestimate the SSB yield since the position of the relaxed-circular form is not altered when the number of SSB per DNA molecule is >1. To overcome this limitation, we have developed a novel method that directly probes and quantifies SSBs. Supercoiled (3)H-pUC19 plasmid samples were irradiated with γ-rays, alkali-denatured, dephosphorylated, and kinated with γ-[(32)P]ATP, and the DNA-incorporated (32)P activities were used to quantify the SSB yields per DNA molecule, employing a standard curve generated using DNA molecules containing a known number of SSBs. The same irradiated samples were analyzed by agarose gel and SSB yields were determined by conventional methods. Comparison of the data demonstrated that the mean SSB yield per plasmid DNA molecule of [21.2±0.59]×10(-2)Gy(-1) as measured by direct probing is ~10-fold higher than that obtained from conventional gel-based methods. These findings imply that the SSB yields inferred from agarose gels need reevaluation, especially when they were utilized in the determination of radiation risk.


Assuntos
Quebras de DNA de Cadeia Simples , DNA Circular/análise , DNA Circular/efeitos da radiação , DNA Super-Helicoidal/análise , DNA Super-Helicoidal/efeitos da radiação , Eletroforese em Gel de Ágar/métodos , Escherichia coli/química , Escherichia coli/efeitos da radiação , Estudos de Avaliação como Assunto , Raios gama , Vetores Genéticos , Plasmídeos/química , Plasmídeos/genética , Plasmídeos/efeitos da radiação , Radioisótopos/análise
4.
Cancer Res ; 67(5): 2197-205, 2007 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-17332350

RESUMO

We are developing a noninvasive approach for targeting imaging and therapeutic radionuclides to prostate cancer. Our method, Enzyme-Mediated Cancer Imaging and Therapy (EMCIT), aims to use enzyme-dependent, site-specific, in vivo precipitation of a radioactive molecule within the extracellular space of solid tumors. Advanced methods for data mining of the literature, protein databases, and knowledge bases (IT. Omics LSGraph and Ingenuity Systems) identified prostatic acid phosphatase (PAP) as an enzyme overexpressed in prostate cancer and secreted in the extracellular space. Using AutoDock 3.0 software, the prodrug ammonium 2-(2'-phosphoryloxyphenyl)-6-iodo-4-(3H)-quinazolinone (IQ(2-P)) was docked in silico into the X-ray structure of PAP. The data indicate that IQ(2-P) docked into the PAP active site with a calculated inhibition constant (K(i)) more favorable than that of the PAP inhibitor alpha-benzylaminobenzylphosphonic acid. When (125)IQ(2-P), the radioiodinated form of the water-soluble prodrug, was incubated with PAP, rapid hydrolysis of the compound was observed as exemplified by formation of the water-insoluble 2-(2'-hydroxyphenyl)-6-[(125)I]iodo-4-(3H)-quinazolinone ((125)IQ(2-OH)). Similarly, the incubation of IQ(2-P) with human LNCaP, PC-3, and 22Rv1 prostate tumor cells resulted in the formation of large fluorescent IQ(2-OH) crystals. No hydrolysis was seen in the presence of normal human cells. Autoradiography of tumor cells incubated with (125)IQ(2-P) showed accumulation of radioactive grains ((125)IQ(2-OH)) around the cells. We anticipate that the EMCIT approach will enable the active in vivo entrapment of radioimaging and radiotherapeutic compounds within the extracellular spaces of primary prostate tumors and their metastases.


Assuntos
Carcinoma/tratamento farmacológico , Simulação por Computador , Sistemas de Liberação de Medicamentos , Espaço Extracelular/efeitos dos fármacos , Pró-Fármacos/administração & dosagem , Neoplasias da Próstata/tratamento farmacológico , Proteínas Tirosina Fosfatases/metabolismo , Fosfatase Ácida , Carcinoma/patologia , Humanos , Radioisótopos do Iodo/administração & dosagem , Radioisótopos do Iodo/farmacocinética , Masculino , Modelos Biológicos , Modelos Moleculares , Neoplasias da Próstata/metabolismo , Neoplasias da Próstata/patologia , Compostos de Amônio Quaternário/administração & dosagem , Compostos de Amônio Quaternário/farmacocinética , Quinazolinonas/administração & dosagem , Quinazolinonas/farmacocinética , Células Tumorais Cultivadas
5.
Radiat Res ; 170(1): 70-82, 2008 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-18582152

RESUMO

From a structural perspective, the factors controlling and the mechanisms underlying the toxic effects of ionizing radiation remain elusive. We have studied the consequences of superhelical/torsional stress on the magnitude and mechanism of DSBs induced by low-energy, short-range, high-LET Auger electrons emitted by (125)I, targeted to plasmid DNA by m-[(125)I]iodo-p-ethoxyHoechst 33342 ((125)IEH). DSB yields per (125)I decay for torsionally relaxed nicked (relaxed circular) and linear DNA (1.74+/-0.11 and 1.62+/-0.07, respectively) are approximately threefold higher than that for torsionally strained supercoiled DNA (0.52+/-0.02), despite the same affinity of all forms for (125)IEH. In the presence of DMSO, the DSB yield for the supercoiled form remains unchanged, whereas that for nicked and linear forms decreases to 1.05+/-0.07 and 0.76+/-0.03 per (125)I decay, respectively. DSBs in supercoiled DNA therefore result exclusively from direct mechanisms, and those in nicked and linear DNA, additionally, from hydroxyl radical-mediated indirect effects. Iodine-125 decays produce hydroxyl radicals along the tracks of Auger electrons in small isolated pockets around the decay site. We propose that relaxation of superhelical stress after radical attack could move a single-strand break lesion away from these pockets, thereby preventing further breaks in the complementary strand that could lead to DSBs.


Assuntos
Quebras de DNA de Cadeia Dupla/efeitos da radiação , Elétrons , DNA/química , DNA/metabolismo , DNA/efeitos da radiação , Plasmídeos/química , Plasmídeos/metabolismo , Plasmídeos/efeitos da radiação , Titulometria
6.
Anal Biochem ; 381(1): 172-4, 2008 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-18638445

RESUMO

Preparations of circular plasmid DNA in either supercoiled or nicked circular form often are contaminated with undesired linear DNA fragments arising from shearing/degradation of chromosomal DNA or linearization of plasmid DNA itself. We report a simple enzymatic method, using a combination of lambda exonuclease and RecJ(f), for the selective removal of linear DNA from such mixtures. lambda exonuclease digests one strand of linear duplex DNA in the 5' to 3' direction, whereas RecJ(f), a single-strand-specific exonuclease, digests the remaining complementary single strand into mononucleotides. This combination of exonucleases can remove linear DNA from a mixture of linear and supercoiled DNA, leaving the supercoiled form intact. Furthermore, the inability of lambda exonuclease to initiate digestion at nicks or gaps enables the removal of undesired linear DNA when nicked circular DNA has been enzymatically prepared from supercoiled DNA. This method can be useful in the preparation of homogeneous circular plasmid DNA required for therapeutic applications and biophysical studies.


Assuntos
DNA Super-Helicoidal/isolamento & purificação , Biologia Molecular/métodos , Plasmídeos/isolamento & purificação , DNA Super-Helicoidal/química , Eletroforese em Gel de Ágar , Etídio , Exonucleases/metabolismo , Conformação de Ácido Nucleico , Plasmídeos/química
7.
Int J Radiat Biol ; 84(12): 976-83, 2008 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19061121

RESUMO

PURPOSE: To determine double-strand-break (DSB) yields produced by decay of minor-groove-bound (123)I-labeled Hoechst 33342 ((123)IEH) in supercoiled (SC) and linear (L) forms of pUC19 DNA, to compare strand-break efficiency of (123)IEH with that of (125)IEH, and to examine the role of DNA topology in DSB induction by these Auger electron emitters. MATERIALS AND METHODS: Tritium-labeled SC and L pUC19 DNA were incubated with (123)IEH (0-10.9 MBq) at 4 degrees C. After (123)I had completely decayed (10 days), samples were analyzed on agarose gel, and single-strand-break (SSB) and DSB yields were measured. RESULTS: Each (123)I decay in SC DNA produces a DSB yield of 0.18 +/- 0.01. On the basis of DSB yields for (125)IEH (0.52 +/- 0.02 for SC and 1.62 +/- 0.07 for L, reported previously) and dosimetric expectations, a DSB yield of approximately 0.5 (3 x 0.18) per (123)I decay is expected for L DNA. However, no DSB are observed for the L form, even after approximately 2 x 10(11) decays of (123)I per microg DNA, whereas a similar number of (125)I decays produces DSB in approximately 40% of L DNA. CONCLUSION: (123)IEH-induced DSB yield for SC but not L DNA is consistent with the dosimetric expectations for Auger electron emitters. These studies highlight the role of DNA topology in DSB production by Auger emitters and underscore the failure of current theoretical dosimetric methods per se to predict the magnitude of DSB.


Assuntos
Quebras de DNA de Cadeia Dupla/efeitos da radiação , Quebras de DNA de Cadeia Simples/efeitos da radiação , DNA Super-Helicoidal/efeitos da radiação , Radioisótopos do Iodo/química , Benzimidazóis , Elétrons , Conformação de Ácido Nucleico , Plasmídeos , Radioatividade
8.
Int J Radiat Biol ; 84(12): 1001-10, 2008 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19061124

RESUMO

PURPOSE: To synthesize N-(3-(3-aminopropylamino)propyl)-2-oxo-2H-chromene-3-carboxamide (7), a novel DNA-binding, coumarin-based, fluorescent hydroxylradical ((*)OH) indicator and to assess its quantum efficiency compared with that of coumarin-3-carboxylic acid (1) and N1,N12-bis[2-oxo-2H-chromene-3-carbonyl]- 1,12-diamine-4,9-diazadodecane (9). MATERIALS AND METHODS: Using computer-generated molecular modeling, 7 and 9 and their respective 7-hydroxylated derivatives 8 and 10 were docked onto DNA dodecamer d(CGCGAATTCGCG)2, the ligand-DNA complexes were energy minimized, and binding free energies and inhibition constants were calculated. Compound 7 was judged an appropriate target molecule and was synthesized. Compounds 1, 7, and 9 were incubated with Na(125)I or irradiated with (137)Cs gamma-rays, and the influence of pH, dose, type of radiation, and the concentration of indicator on fluorescence yield were determined. RESULTS: Non-fluorescent 7 and 9 are converted to fluorescent, 7-hydroxylated derivatives 8 and 10 after interaction with (*)OH in aqueous solution. For 1, 7, and 9, hydroxylation yield increases linearly with both Na(125)I dose (0-700 x 10(6) decays) and (137)Cs dose (0-11.0 Gy). Fluorescence induction is significantly reduced at acidic pH and the fluorescent quantum yield of 8 is approximately 3 times that of 2 or 10 at pH 7.0. With Na(125)I incubation and gamma-ray irradiation, the fluorescence signal of 7 increases linearly with concentration and saturates at approximately 50 microM. CONCLUSION: Compound 7 quantifies lower concentrations of (*)OH than do 1 and 9. This detector is therefore likely to be a good reporter of (*)OH produced within a few nanometers of DNA.


Assuntos
Cumarínicos/síntese química , Corantes Fluorescentes/síntese química , Raios gama , Radical Hidroxila/análise , Sondas Moleculares/síntese química , Oligonucleotídeos/química , Iodeto de Sódio/química , Espermidina/análogos & derivados , Espermina/análogos & derivados , Cumarínicos/química , Corantes Fluorescentes/química , Concentração de Íons de Hidrogênio , Radioisótopos do Iodo , Sondas Moleculares/química , Conformação de Ácido Nucleico , Oligonucleotídeos/efeitos da radiação , Soluções , Espermidina/síntese química , Espermidina/química , Espermina/síntese química , Espermina/química , Água
9.
Appl Radiat Isot ; 66(1): 50-9, 2008 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17931872

RESUMO

A high-yield radioiodination method for various types of molecules is described. The approach employs DMSO as precursor solvent, a reaction ratio of 2-5 precursor molecules per iodine atom, 5-10 microg oxidant, and a 10-25 microl reaction volume. The solution is vortexed at room temperature for 1-5 min and progress of the reaction is assessed by HPLC. Radioiodinated products are obtained in > or = 95% yield and meet the requirements for radiotracer imaging, biodistribution studies, and molecular and cellular biology research.


Assuntos
Radioisótopos do Iodo/isolamento & purificação , Compostos Radiofarmacêuticos/isolamento & purificação , Animais , Anticorpos Monoclonais/isolamento & purificação , Anticorpos Antineoplásicos/isolamento & purificação , Cromatografia Líquida de Alta Pressão , Dimetil Sulfóxido , Imunoglobulina G/isolamento & purificação , Camundongos , Radioquímica , Compostos Radiofarmacêuticos/síntese química , Solventes
10.
Molecules ; 13(2): 391-404, 2008 Feb 18.
Artigo em Inglês | MEDLINE | ID: mdl-18305426

RESUMO

Most cancer therapeutics (chemo, radiation, antibody-based, anti-angiogenic) are at best partially and/or temporarily effective. In general, the causes for failure can be summarized as: (i) poor diffusion and/or nonuniform distribution of drug/prodrug molecules in solid tumors; (ii) high drug concentration and retention in normal tissues (leading to side effects); (iii) requirement for plasma-membrane permeability and/or internalization of drug/prodrug molecules; (iv) low uptake of drug by tumor; (v) lack of retention of drug within tumor (most have gradient-driven reversible binding); and (vi) multidrug resistance. We are developing an innovative technology that aims to surmount these problems by actively concentrating and permanently entrapping radioimaging and radiotherapeutic prodrugs specifically within solid tumors. The approach will enable noninvasive sensing (imaging) and effective therapy of solid tumors, allowing tumor detection, diagnosis, and treatment to be closely coupled (personalized medicine).


Assuntos
Sistemas de Liberação de Medicamentos , Neoplasias/diagnóstico por imagem , Pró-Fármacos/administração & dosagem , Radioisótopos/uso terapêutico , Animais , Humanos , Pró-Fármacos/química , Radioisótopos/química , Cintilografia
11.
J Med Chem ; 50(4): 663-73, 2007 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-17256924

RESUMO

Enzyme-mediated cancer imaging and therapy (EMCIT) is a novel approach in which radioactive water-soluble molecules are precipitated in vivo following their hydrolysis by extracellular enzymes overexpressed by cancer cells. AutoDock 3.0 was used to model the interaction-binding between a series of iodinated quinazolinone derivatives and human placental alkaline phosphatase (PLAP, crystal structure in the Protein Data Bank) and to assess the effects of structural modification of the derivatives. Ammonium 2-(2',4'-diphosphoryloxyphenyl)-6-iodo-4-(3H)-quinazolinone (IQ2-P,4-P), having the most favorable calculated inhibition constant, was synthesized and characterized. Concentration-dependent, PLAP-mediated conversion of IQ2-P,4-P (4)/125IQ2-P,4-P (6) to water-insoluble 2-(2',4'-dihydroxyphenyl)-6-[127I/125I]iodo-4-(3H)-quinazolinone (127IQ2-OH,4-OH (2)/125IQ2-OH,4-OH (7)) was observed in solution. Autoradiography indicated that 6 is hydrolyzed by human cancer cells and the resulting 7 precipitates on exterior cell surfaces. Biodistribution studies in mice demonstrated that 6 is minimally retained by normal tissues. The findings support the validity of the EMCIT approach.


Assuntos
Modelos Moleculares , Pró-Fármacos/síntese química , Quinazolinonas/síntese química , Fosfatase Alcalina/química , Animais , Autorradiografia , Linhagem Celular Tumoral , Desenho de Fármacos , Humanos , Hidrólise , Isótopos de Iodo , Radioisótopos do Iodo , Ligantes , Camundongos , Placenta/enzimologia , Pró-Fármacos/química , Pró-Fármacos/metabolismo , Quinazolinonas/química , Quinazolinonas/metabolismo , Solubilidade , Soluções , Distribuição Tecidual
12.
Radiat Res ; 168(2): 233-42, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17638412

RESUMO

To develop a molecular probe for detection of hydroxyl radicals in the vicinity of DNA, the coumarin-polyamine complexes, N(1),N(12)-bis[2-oxo-2H-chromene-3-carbonyl]-1,12-diamine-4,9-diazadodecane (5) and tris[2-(2-oxo-2H-chromene-3-carboxamido)ethyl]amine (7), and their hydroxylated derivatives, N(1),N(12)-bis[7-hydroxy-2-oxo-2H-chromene-3-carbonyl]-1,12-diamine-4,9-diazadodecane (6) and tris[2-(7-hydroxy-2-oxo-2H-chromene-3-carboxamido)ethyl]amine (8), have been synthesized. Using computer-generated molecular modeling, the derivatives have been docked onto DNA dodecamer d(CGCGAATTCGCG)(2), the ligand-DNA complexes have been minimized, and the free binding energies (DeltaG(binding)) and inhibition constants (K(i)) have been calculated. Compound 7 is not water-soluble at the concentrations required for the project. When aqueous solutions of 5 are irradiated with gamma rays, the relationship between induced fluorescence and dose is linear in the range of 0 to 10 Gy. The fluorescence emission spectrum of irradiated 5 is similar to that of its dihydroxy derivative 6, indicating conversion of 5 to 6, and induction of fluorescence records formation of hydroxyl radicals in aqueous solution. The dicoumarin-polyamine 5, a novel compound for the detection of hydroxyl radicals close to DNA, is a sensitive and quantitative probe with potential for applications in biological systems.


Assuntos
Cumarínicos/química , Corantes Fluorescentes/química , Radical Hidroxila/análise , Poliaminas/química , Relação Dose-Resposta à Radiação , Raios gama , Concentração de Íons de Hidrogênio , Modelos Moleculares
13.
Mol Cancer Ther ; 5(12): 3001-13, 2006 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-17172404

RESUMO

As part of the development of enzyme-mediated cancer imaging and therapy, a novel technology to entrap water-insoluble radioactive molecules within solid tumors, we show that a water-soluble, radioactive quinazolinone prodrug, ammonium 2-(2'-phosphoryloxyphenyl)-6-[125I]iodo-4-(3H)-quinazolinone (125IQ(2-P)), is hydrolyzed by alkaline phosphatase to a water-insoluble, radiolabeled drug, 2-(2'-hydroxyphenyl)-6-[125I]iodo-4-(3H)-quinazolinone (125IQ(2-OH)). Biodistribution data suggest the existence of two isoforms of the prodrug (IQ(2-P(I)) and IQ(2-P)), and this has been confirmed by their synthesis and characterization. Structural differences of the two isoforms have been examined using in silico molecular modeling techniques and docking methods to describe the interaction/binding between the isoforms and human placental alkaline phosphatase (PLAP), a tumor cell, membrane-associated, hydrolytic enzyme whose structure is known by X-ray crystallographic determination. Docking data show that IQ(2-P), but not IQ(2-P(I)), fits the active binding site of PLAP favorably and interacts with the catalytic amino acid Ser(92), which plays an important role in the hydrolytic process. The binding free energies (DeltaG(binding)) of the isoforms to PLAP predict that IQ(2-P) will be the better substrate for PLAP. The in vitro incubation of the isoforms with PLAP leads to the rapid hydrolysis of IQ(2-P) only and confirms the in silico expectations. Fluorescence microscopy shows that in vitro incubation of IQ(2-P) with mouse and human tumor cells causes the extracellular, alkaline phosphatase-mediated hydrolysis of the molecule and precipitation of fluorescent crystals of IQ(2-OH). No hydrolysis is seen in the presence of normal mouse and human cells. Furthermore, the intratumoral injection of 125IQ(2-P) into alkaline phosphatase-expressing solid human tumors grown s.c. in nude rats results in efficient hydrolysis of the compound and retention of approximately 70% of the injected radioactivity, whereas similar injection into normal tissues (e.g., muscle) does not produce any measurable hydrolysis (approximately 1%) or retention of radioactivity at the injected site. These studies support the enzyme-mediated cancer imaging and therapy technology and show the potential of such quinazolinone derivatives in the in vivo radiodetection (123I/124I) and therapy (131I) of solid tumors.


Assuntos
Fosfatase Alcalina/química , Fosfatase Alcalina/metabolismo , Neoplasias/enzimologia , Pró-Fármacos/síntese química , Pró-Fármacos/farmacocinética , Quinazolinonas/síntese química , Quinazolinonas/farmacocinética , Animais , Autorradiografia/métodos , Linhagem Celular Tumoral , Cristalografia por Raios X/métodos , Desenho de Fármacos , Hidrólise , Radioisótopos do Iodo , Marcação por Isótopo/métodos , Camundongos , Camundongos Endogâmicos C3H , Microscopia Confocal/métodos , Microscopia de Fluorescência/métodos , Modelos Moleculares , Neoplasias/diagnóstico , Neoplasias/tratamento farmacológico , Pró-Fármacos/química , Pró-Fármacos/farmacologia , Quinazolinonas/química , Quinazolinonas/farmacologia , Ratos , Termodinâmica
14.
BMC Bioinformatics ; 7: 354, 2006 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-16857057

RESUMO

BACKGROUND: We present an effective, rapid, systematic data mining approach for identifying genes or proteins related to a particular interest. A selected combination of programs exploring PubMed abstracts, universal gene/protein databases (UniProt, InterPro, NCBI Entrez), and state-of-the-art pathway knowledge bases (LSGraph and Ingenuity Pathway Analysis) was assembled to distinguish enzymes with hydrolytic activities that are expressed in the extracellular space of cancer cells. Proteins were identified with respect to six types of cancer occurring in the prostate, breast, lung, colon, ovary, and pancreas. RESULTS: The data mining method identified previously undetected targets. Our combined strategy applied to each cancer type identified a minimum of 375 proteins expressed within the extracellular space and/or attached to the plasma membrane. The method led to the recognition of human cancer-related hydrolases (on average, approximately 35 per cancer type), among which were prostatic acid phosphatase, prostate-specific antigen, and sulfatase 1. CONCLUSION: The combined data mining of several databases overcame many of the limitations of querying a single database and enabled the facile identification of gene products. In the case of cancer-related targets, it produced a list of putative extracellular, hydrolytic enzymes that merit additional study as candidates for cancer radioimaging and radiotherapy. The proposed data mining strategy is of a general nature and can be applied to other biological databases for understanding biological functions and diseases.


Assuntos
Biomarcadores Tumorais/metabolismo , Bases de Dados de Proteínas , Marcação de Genes/métodos , Armazenamento e Recuperação da Informação/métodos , Proteínas de Neoplasias/metabolismo , Neoplasias/metabolismo , PubMed , Sistemas de Gerenciamento de Base de Dados , Sistemas de Liberação de Medicamentos/classificação , Sistemas de Liberação de Medicamentos/métodos , Marcação de Genes/classificação , Humanos , Processamento de Linguagem Natural , Proteínas de Neoplasias/classificação , Proteínas de Neoplasias/genética , Neoplasias/genética , Integração de Sistemas
15.
Radiat Res ; 165(6): 688-94, 2006 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16802869

RESUMO

The bystander effect, originating from cells irradiated in vitro, describes responses of surrounding cells not targeted by the radiation. Previously we demonstrated that the subcutaneous injection into nude mice of human adenocarcinoma LS174T cells lethally irradiated by Auger electrons from the decay of DNA-incorporated (125)I inhibits growth of co-injected LS174T cells (inhibitory bystander effect; Proc. Natl. Acad. Sci. USA 99, 13765-13770, 2002). We have repeated these studies using cells exposed to lethal doses of (123)I, an Auger electron emitter whose emission spectrum is identical to that of (125)I, and report herein that the decay of (123)I within tumor cell DNA stimulates the proliferation of neighboring unlabeled tumor cells growing subcutaneously in nude mice (stimulatory bystander effect). Similar inhibitory bystander effects ((125)I) and stimulatory bystander effects ((123)I) are obtained in vitro. Moreover, supernatants from cultures with (125)I-labeled cells are positive for tissue inhibitors of metalloproteinases (TIMP1 and TIMP2), and those from cultures with (123)I-labeled cells are positive for angiogenin. These findings call for the re-evaluation of current dosimetric approaches for the estimation of dose-response relationships in individuals after radiopharmaceutical administration or radiocontamination and demonstrate a need to adjust all "calculated" dose estimates by a dose modification factor (DMF), a radionuclide-specific constant that factors in hitherto not-so-well recognized biophysical processes.


Assuntos
Adenocarcinoma/patologia , Efeito Espectador/efeitos da radiação , Proliferação de Células/efeitos da radiação , Radioisótopos do Iodo/administração & dosagem , Animais , Linhagem Celular Tumoral , Relação Dose-Resposta à Radiação , Humanos , Masculino , Camundongos , Camundongos Nus , Doses de Radiação
16.
Radiat Res ; 166(2): 333-44, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16881734

RESUMO

Previously, the kinetics of strand break production by (125)I-labeled m-iodo-p-ethoxyHoechst 33342 ((125)IEH) in supercoiled (SC) plasmid DNA had demonstrated that approximately 1 DSB is produced per (125)I decay both in the presence and absence of the hydroxyl radical scavenger DMSO. In these experiments, an (125)IEH:DNA molar ratio of 42:1 was used. We now hypothesize that this DSB yield (but not the SSB yield) may be an overestimate due to subsequent decays occurring in any of the 41 (125)IEH molecules still bound to nicked (N) DNA. To test our hypothesis, (125)IEH was incubated with SC pUC19 plasmids ((125)IEH:DNA ratio of approximately 3:1) and the SSB and DSB yields were quantified after the decay of (125)I. As predicted, the number of DSBs produced per (125)I decay is one-half that reported previously ( approximately 0.5 compared to approximately 1, +/- DMSO) whereas the number of SSBs ( approximately 3/(125)I decay) is similar to that obtained previously ( approximately 90% are generated by OH radicals). Direct visualization by atomic force microscopy confirms formation of L and N DNA after (125)IEH decays in SC DNA and supports the strand break yields reported. These findings indicate that although SSB production is independent of the number of (125)IEH bound to DNA, the DSB yield can be augmented erroneously by (125)I decays occurring in N DNA. Further analysis indicates that 17% of SSBs and 100% of DSBs take place within the plasmid molecule in which an (125)IEH molecule decays, whereas 83% of SSBs are formed in neighboring plasmid DNA molecules.


Assuntos
Benzimidazóis/química , Benzimidazóis/farmacologia , Dano ao DNA/efeitos dos fármacos , DNA/química , DNA/efeitos dos fármacos , Plasmídeos/química , Plasmídeos/efeitos dos fármacos , DNA/metabolismo , DNA/ultraestrutura , Dimetil Sulfóxido/farmacologia , Eletroforese em Gel de Ágar , Radioisótopos do Iodo , Microscopia de Força Atômica , Modelos Moleculares , Conformação de Ácido Nucleico , Plasmídeos/ultraestrutura
17.
Nucl Med Biol ; 33(8): 1055-63, 2006 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-17127180

RESUMO

To clarify the contribution of apoptosis to cell death in four human solid tumor cell lines, clonogenic cell survival (indicator of radiosensitivity) and induction of caspase-3 (CASP-3)/caspase-3-like proteases (CASP-3LP) and the production of DNA fragmentation (markers for apoptosis) were studied in RKO, LS174T, MCF7 and TE671 cells exposed to DNA-incorporated Auger-electron-emitting (125)I (5-[(125)I]iodo-2'-deoxyuridine) or gamma-radiation. Clonogenic survival was assessed by colony-forming assay, CASP-3/CASP-3LP induction with a fluorogenic substrate and DNA fragmentation by ligation-mediated polymerase chain reaction. For (125)I, log dose-survival curves had no shoulder [high-linear-energy-transfer (LET)-like] and decreased exponentially at different rates in various cell lines. Induction of CASP-3/CASP-3LP in radiosensitive RKO and LS174T cells was threefold greater than that in radioresistant TE671 and MCF7 cells. Nucleosomal laddering in (125)I-radiosensitive cell lines was dose-dependent, and no laddering was detected in radioresistant lines. For gamma-radiation, the survival curve for LS174T cells was monoexponential and that for the other lines exhibited a distinct shoulder (low-LET-like). The most radiosensitive cell line, LS174T, showed the highest induction of CASP-3/CASP-3LP, and the most radioresistant line, TE671, showed the lowest induction. Although DNA laddering was not detectable in TE671 cells, it was observed in other lines, being most prominent in LS174T cells. We conclude that apoptosis initiated by DNA-incorporated (125)I is dose-dependent, correlates with cell radiosensitivity and takes place through a CASP-3-mediated pathway, whereas that after gamma-irradiation probably occurs via a CASP-3-independent pathway and/or a CASP-3-mediated pathway and does not correlate with cell radiosensitivity.


Assuntos
Apoptose/efeitos da radiação , Elétrons , Raios gama , Neoplasias/radioterapia , Caspase 3/biossíntese , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos da radiação , Fragmentação do DNA , Relação Dose-Resposta à Radiação , Indução Enzimática/efeitos da radiação , Humanos , Radioisótopos do Iodo/uso terapêutico , Neoplasias/patologia , Reação em Cadeia da Polimerase , Tolerância a Radiação
18.
J Nucl Med ; 46 Suppl 1: 4S-12S, 2005 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-15653646

RESUMO

Although the general radiobiologic principles underlying external beam therapy and radionuclide therapy are the same, there are significant differences in the radiobiologic effects observed in mammalian cells. External beam and brachytherapy emissions are composed of photons, whereas radiations of interest in radionuclide therapy are particulate. The special features that characterize the biologic effects consequent to the traversal of charged particles through mammalian cells are explored with respect to DNA lesions and cellular responses. Information about the ways in which these radionuclides are used to treat cancers in experimental models are highlighted.


Assuntos
Fenômenos Fisiológicos Celulares/efeitos da radiação , DNA/química , DNA/efeitos da radiação , Neoplasias/radioterapia , Radiobiologia/métodos , Radioisótopos/química , Radioisótopos/uso terapêutico , Radioterapia/métodos , Animais , Meia-Vida , Humanos , Transferência Linear de Energia , Modelos Biológicos , Modelos Químicos , Compostos Radiofarmacêuticos/química , Compostos Radiofarmacêuticos/efeitos da radiação , Dosagem Radioterapêutica
19.
J Nucl Med ; 46(5): 800-6, 2005 May.
Artigo em Inglês | MEDLINE | ID: mdl-15872354

RESUMO

UNLABELLED: This study assesses targeting of lung metastases in mice with the radioiodinated thymidine analog 5-[(123)I/(125)I]iodo-2'-deoxyuridine ((123)I-IUdR/(125)I-IUdR), formulated with varying amounts of tributyltin precursor and injected intravenously. METHODS: Six- to 8-wk-old C57BL/6 mice were injected intravenously with B16F10 melanoma cells. Two weeks later, when lung tumors were established, the animals were injected intravenously with (125)I-IUdR synthesized using 1, 35, 100, 150, 200, or 250 microg 5-tributylstannyl-2'-deoxyuridine (SnUdR) in the presence of an oxidant. Nontumor-bearing mice were also injected with these formulations and served as control animals. Twenty-four hours later, the animals were killed, and the radioactivity associated with the lungs and other tissues was measured in a gamma-counter. The percentage injected dose per gram tissue (%ID/g) and tumor-to-nontumor ratios (T/NT ratios) were calculated. Phosphor imaging was done on lungs from tumor-bearing and nontumor-bearing mice injected with (125)I-IUdR formulated with each tin precursor concentration. Scintigraphy was also performed 3 and 24 h after intravenous injection of (123)I-IUdR. RESULTS: The %ID/g (125)I-IUdR was higher in lungs of tumor-bearing animals than in lungs of control animals. Although the increase in SnUdR present led to a small but statistically significant decrease in the radioactive content of normal lungs, a 3-fold increase was observed in the lungs of tumor-bearing animals with radiopharmaceutical formulated with 100 microg SnUdR (5 microg per mouse). This enhancement in radioactive uptake by the lungs led to approximately 14-fold increases in T/NT ratios. Phosphor imaging ((125)I-IUdR) of lungs as well as scintigraphy ((123)I-IUdR) of whole animals substantiated these findings. CONCLUSION: The formulation for the synthesis of radio-IUdR that leads to the highest %ID/g in tumor and the best T/NT ratio has been identified. Further studies are required to determine the factors responsible for specific enhancement in IUdR tumor uptake.


Assuntos
Sistemas de Liberação de Medicamentos/métodos , Idoxuridina/farmacocinética , Radioisótopos do Iodo/farmacocinética , Neoplasias Pulmonares/metabolismo , Melanoma/metabolismo , Melanoma/secundário , Radiometria/métodos , Animais , Idoxuridina/uso terapêutico , Radioisótopos do Iodo/uso terapêutico , Marcação por Isótopo/métodos , Neoplasias Pulmonares/diagnóstico por imagem , Neoplasias Pulmonares/radioterapia , Masculino , Melanoma/diagnóstico por imagem , Melanoma/radioterapia , Camundongos , Camundongos Endogâmicos C57BL , Cintilografia , Compostos Radiofarmacêuticos/farmacocinética , Compostos Radiofarmacêuticos/uso terapêutico , Dosagem Radioterapêutica , Distribuição Tecidual , Contagem Corporal Total
20.
J Nucl Med ; 44(12): 1945-61, 2003 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-14660721

RESUMO

Inherent in the application of advances in biomedical science to nuclear medicine is the concept of molecular targeting: the in vivo concentration of labeled tracer by a gene, its transcribed DNA, or its protein product. This mechanism of localization has been and is being exploited for both nuclear imaging and radioisotopic therapy. Agents, such as antisense molecules, aptamers, antibodies, and antibody fragments, can be aimed at molecular targets. Tumor and nerve cell receptors provide such targets. So do certain cellular physiologic activities, including metabolism, hypoxia, proliferation, apoptosis, angiogenesis, response to infection, and multiple drug resistance. In this article we review the principles of molecular targeting based on radioisotopic methods and provide examples from the literature. We discuss applications to imaging and therapy and point out the hurdles that must be overcome in bringing molecular targeting to clinical reality.


Assuntos
Biomarcadores Tumorais/metabolismo , Sistemas de Liberação de Medicamentos/métodos , Marcação de Genes/métodos , Neoplasias/diagnóstico por imagem , Neoplasias/radioterapia , Radioisótopos/uso terapêutico , Radioterapia/métodos , Marcadores Genéticos , Humanos , Neoplasias/tratamento farmacológico , Radioisótopos/farmacocinética , Cintilografia
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