Temporal patterns of ungulate-vehicle collisions in Lithuania.

Wildlife mortality caused by vehicles is a serious conservation and economic problem as collisions with large mammals are global, pervasive and increasing. We analysed 14,989 reports of ungulate-vehicle collisions (UVC) that occurred in Lithuania from 2002 to 2017. We analysed UVC data for four major ungulate species (roe deer, red deer, moose and wild boar) and checked for potential seasonal or daily trends. The temporal distribution of collisions was species-dependent. UVC analysis showed strong monthly and hourly pattern. Most occurrences took place before or during sunrise (dawn) and after or during sunset (dusk) during the year. In spring, the highest UVC peaks occurred early in the morning and late in the evening, while in winter these peaks occurred in late mornings and early evenings. With most UVC occurring on Fridays, daily variations were weak. We conclude that temporal variations of UVC distributions are result of a complex interaction of phenological factors and animal behaviour. The information provided in this study reinforces the knowledge on the dynamics and patterns of UVC and represents an important element for the identification of mitigation measures. Our findings suggest that efforts to reduce UVC should also focus on driver attitudes considering the seasonal and daily variations in UVC.

Ungulate management in European national parks: Why a more integrated European policy is needed.

1. Primary objectives of national parks usually include both, the protection of natural processes and species conservation. When these objectives conflict, as occurs because of the cascading effects of large mammals (i.e., ungulates and large carnivores) on lower trophic levels, park managers have to decide upon the appropriate management while considering various local circumstances. 2. To analyse if ungulate management strategies are in accordance with the objectives defined for protected areas, we assessed the current status of ungulate management across European national parks using the naturalness concept and identified the variables that influence the management. 3. We collected data on ungulate management from 209 European national parks in 29 countries by means of a large-scale questionnaire survey. Ungulate management in the parks was compared by creating two naturalness scores. The first score reflects ungulate and large carnivore species compositions, and the second evaluates human intervention on ungulate populations. We then tested whether the two naturalness score categories are influenced by the management objectives, park size, years since establishment, percentage of government-owned land, and human impact on the environment (human influence index) using two generalized additive mixed models. 4. In 67.9% of the national parks, wildlife is regulated by culling (40.2%) or hunting (10.5%) or both (17.2%). Artificial feeding occurred in 81.3% of the national parks and only 28.5% of the national parks had a non-intervention zone covering at least 75% of the area. Furthermore, ungulate management differed greatly among the different countries, likely because of differences in hunting traditions and cultural and political backgrounds. Ungulate management was also influenced by park size, human impact on the landscape, and national park objectives, but after removing these variables from the full model the reduced models only showed a small change in the deviance explained. In areas with higher anthropogenic pressure, wildlife diversity tended to be lower and a higher number of domesticated species tended to be present. Human intervention (culling and artificial feeding) was lower in smaller national parks and when park objectives followed those set by the International Union for the Conservation of Nature (IUCN). 5. Our study shows that many European national parks do not fulfil the aims of protected area management as set by IUCN guidelines. In contrast to the USA and Canada, Europe currently has no common ungulate management policy within national parks. This lack of a common policy together with differences in species composition, hunting traditions, and cultural or political context has led to differences in ungulate management among European countries. To fulfil the aims and objectives of national parks and to develop ungulate management strategies further, we highlight the importance of creating a more integrated European ungulate management policy to meet the aims of national parks.

Associations between different Laelapidae (Mesostigmata: Dermanyssoidea) mites and small rodents from Lithuania.

Associations between species of Laelapidae (Mesostigmata: Dermanyssoidea) mites and small rodents have been studied insufficiently. The aim of this study was to investigate infestation patterns of small rodent species by laelapid mites at six locations in Lithuania. A total of 728 rodents were snap- and live-trapped in various locations during 2013-2016. Eight rodent species were identified, namely Apodemus flavicollis, Apodemus agrarius, Myodes glareolus, Micromys minutus, Mus musculus, Microtus oeconomus, Microtus arvalis and Microtus agrestis. A total of 343 (47.1%) rodents were found to be infested with up to eight species of parasitic mites from the Laelapidae family (n = 1363): Laelaps agilis, Laelaps hilaris, Hyperlaelaps microti, Haemogamasus nidi, Haemogamasus hirsutus, Eulaelaps stabularis, Hirstionyssus sunci and Myonyssus gigas. The dominant species of mite found on rodents was L. agilis (89.1%), found on 43.4% of all hosts. Abundance and mean intensity of infestation with mites varied among species of hosts and were highest for A. flavicollis. We document new geographical and host records for gamasid mites of eight rodent species in Lithuania.

Puumala Virus in Bank Voles, Lithuania.

Little is known about the presence of human pathogenic Puumala virus (PUUV) in Lithuania. We detected this virus in bank voles (Myodes glareolus) in a region of this country in which previously PUUV-seropositive humans were identified. Our results are consistent with heterogeneous distributions of PUUV in other countries in Europe.

High efficiency protocol of DNA extraction from Micromys minutus mandibles from owl pellets: a tool for molecular research of cryptic mammal species.

Owl pellets have high potential as a source of DNA. However, this noninvasive method of collecting DNA is rarely used, and its methodological aspects are poorly understood. We investigated the methodology for DNA extraction and amplification from owl pellets containing the smallest European rodent-the Harvest mouse Micromys minutus-as an example. We used mandibles identified in owl pellets for mitochondrial and nuclear DNA amplification. For DNA extraction, we tested two commercial protocols and utilized a protocol being a combination of two commercial kits which ensured high efficiency of DNA extraction. Additionally, we recorded that the amount of DNA was five times higher in extracts from teeth as compared to DNA extracts from jawbones derived from the same mandible. The quantity of DNA was significantly positively correlated with biological sample weight; however, the age of the pellet remains had an impact on the level of inhibition. We recorded inhibition in 40 % of mtDNA extracts derived from pellets older than 150 months, whereas in DNA extracts from pellets younger than 80 months, we did not observe a negative impact of inhibition on PCR efficiency. The amplification success rate was 89.9 % for the mitochondrial fragment and 39.4 % in the case of the nuclear fragment. We observed partial degradation of DNA evidenced by the fact that the longest fragments that we were able to amplify in the case of mtDNA were 450 and 200 bp for nuDNA. The study shows that pellets can be considered as a source of DNA and have high potential for molecular research in the case of threatened species and species that are difficult to study using standard field techniques.

Insight into Body Condition Variability in Small Mammals.

The body condition index (BCI) is an indicator of both reproductive success and health in small mammals and might help to understand ecological roles of species. We analyzed BCI data from 28,567 individuals trapped in Lithuania between 1980 and 2023. We compared BCIs between species and examined differences in age groups, gender, and reproductive statuses within each species. Seven out of eighteen species had sample sizes with N < 100. In terms of species, we found that seven of the eight species with the highest average BCIs are granivores or omnivores, which can consume animal-based food at least seasonally. The two contrasting (decreasing or increasing) BCI patterns observed during ontogeny can be related to diet differences among juveniles, subadults, and adult animals. Our results demonstrate that reproductive stress has a negative impact on the BCI of adult females in all analyzed species and nearly all adult males. Although the animals with extremely low BCI consisted mostly of shrews, for the first time we found 23 common and pygmy shrews exhibiting the Chitty effect, i.e., a very high body mass resulting in a BCI > 5.0. This is the first multi-species approach of body condition at middle latitudes. The results increase our understanding of how changing environmental conditions are affecting small mammals.

Trends and Characteristics of Human Casualties in Wildlife-Vehicle Accidents in Lithuania, 2002-2022.

We analyzed 474 human casualties in wildlife-vehicle accidents (WVAs) that occurred between 2002 and 2022 in Lithuania, which is a small northern European country. The study revealed the escalating trend of WVAs, since 2018 surpassing other transport accidents, although the number of casualties per WVA was ca. 100 times lower compared to other transport accidents. Moose was the primary contributor, responsible for 66.7% of fatalities and 47.2% of injuries, despite much lower species abundance compared to roe deer, which is the main species involved in WVAs without human casualties. Temporal patterns highlighted seasonal, daily, and hourly variations, with the majority of casualties occurring during dusk or dawn in May and September, on weekends, and between 20:00 and 22:00. Spatially, main roads with high traffic density exhibited the highest casualties per unit length. Most casualties occurred after hitting an animal directly with cars and motorcycles being most vulnerable vehicles. The effectiveness of WVA prevention measures was inconclusive: 9.5% of fatalities and 1.4% of injuries were registered in the area of the warning sign, and 10.4% of all casualties occurred on fenced road segments. These findings suggest the need for a critical evaluation of the current prevention strategies in reducing human casualties associated with WVAs.

Low Genetic Variability of the Tundra Vole in Lithuania.

The distribution and spread of the tundra vole (Alexandromys oeconomus) in Lithuania have been documented over the last 70 years, but the genetic diversity of the species has not been studied. In this study, we examined A. oeconomus trapped in three sites in northern and western Lithuania using mtDNA sequence analysis of the cytb and control region. The western and northern sites are separated by anthropogenic landscape barriers. The western site is subject to regular spring flooding. Phylogenetic analyses of the studied individuals placed them in the Central European phylogroup, suggesting that Lithuanian A. oeconomus originated from northeastern Poland. In Lithuania, the genetic diversity of A. oeconomus at both mtDNA loci was relatively low (Hd < 0.6, π < 0.002) compared to that found in other European samples (Hd = 0.833-0.958; π = 0.00402-0.01552). Individuals analyzed in Lithuania were genetically different from samples collected in Poland and Northern Europe (ΦST > 0.15, p < 0.05). The genetic divergence between the western and northern samples of A. oeconomus in Lithuania, together with the low genetic variability among the voles studied, provides new insights into the phylogeography of the species and the influence of barriers on the colonization of the country.

First Observations of Buzzards (Buteo) as Definitive Hosts of Sarcocystis Parasites Forming Cysts in the Brain Tissues of Rodents in Lithuania.

Representatives of the genus Sarcocystis are worldwide distributed apicomplexan parasites characterised by two-host prey-predator relationships. Sarcocystis spp. produce sarcocysts in the muscles and brains of intermediate hosts and develop sporocysts in the intestines of definitive hosts. Two species, Sarcocystis glareoli and Sarcocystis microti, previously assigned to the genus Frenkelia, form cysts in the brains of rodents and are transmitted through the common buzzard (Buteo buteo). In our study, brain samples of 694 small mammals caught in different regions of Lithuania were examined for Sarcocystis spp. Additionally, 10 B. buteo and two rough-legged buzzards (Buteo lagopus) were tested for sporocysts of the analysed parasites. Sarcocystis species were identified based on 28S rRNA sequence comparison. Of the eleven species of small mammals tested, Sarcocystis parasites were observed only in the bank vole (Clethrionomys glareolus). Cysts of S. glareoli were detected in 34 out of 374 C. glareolus (9.1%, 95% CI = 6.4-12.5%). Molecular investigation showed the presence of only S. glareoli in the intestines of 50% of B. buteo. Furthermore, two species, Sarcocystis sp. Rod3 and Sarcocystis sp. Rod4, were confirmed in B. lagopus. Our results demonstrate the need for further studies on Sarcocystis cycling between rodents and birds.

The Abundance and Dynamics of Small Mammals and Their Predators: An Editorial.

Small mammals (rodents and insectivores) represent an eclectic group of numerous species of different phylogenetic origins that share similar biological/ecological characteristics derived from their small size [...].

Abundance and Population Structure of Small Rodents in Fruit and Berry Farms.

Fruit and berry farms are anthropogenic habitats still inhabited by small mammals, though their presence is constantly affected by agricultural activities. Based on trapping data from 2018-2022, we analyzed the abundance and population structure of the dominant rodent species to assess changes in gender and age ratios by year and habitat, the annual and seasonal dynamics of relative abundance, and the relationship between breeding parameters and abundance. The relative abundance of the dominant species, common vole, yellow-necked mouse, striped field mouse, and bank vole, and their proportion in the investigated community varied according to year, season, and habitat. No outbreaks were recorded during the study period. The abundance of the striped field mouse exhibited a downward trend independently of habitat, while the abundance and proportions of the other three species were habitat-dependent. There was no consistent pattern between litter size and relative abundance in the same or following years. Given the ongoing conflict between biodiversity conservation in Europe and agriculture, the results contribute to a better understanding of the functioning and viability of rodent populations in fruit farms and may be used in agroecology and sustainable farming.

Mammal Roadkills in Lithuanian Urban Areas: A 15-Year Study.

We investigated roadkills in urban areas in Lithuania from 2007 to 2022, including two periods with COVID-19 restrictions on people's movement. We analyzed the proportions of wild and domestic animals in roadkill, annual trends, the predominant species involved, and monthly changes during the restrictions. Urban roads were characterized by a low species diversity of roadkilled mammals, with roe deer (Capreolus capreolus) dominating. Total numbers increased exponentially during the study period. The proportion of domestic animals, 12.2%, significantly exceeded that on non-urban roads in the country. The proportion of domestic animals decreased from over 40% in 2007-2009 to 3.7-5.4% in 2020-2022, while the proportion of wild mammals increased from 36.1-39.6% to 89.9-90.6%, respectively. During the periods of COVID-19 restrictions, the number of roadkills in urban areas was significantly higher than expected based on long-term trends. Compared to 2019, the number of roadkilled roe deer in 2020-2021 almost doubled from 700 to 1281-1325 individuals. These anthropause effects were, however, temporary. The imbalance between the roadkill number and transport intensity might require new mitigation strategies to sustain mammal populations in urban areas, at least through improving driver awareness on the issue.

Shrews Under-Represented in Fruit Farms and Homesteads.

Shrews are a less studied group of small mammals than rodents. Between 2018 and 2022, we surveyed 23 sites in Lithuania, including natural and anthropogenic habitats, with the aim to assess the proportion of Soricidae in small mammal communities and their diet based on stable isotope analysis. The average representation of Soricidae was 3.1%, about half the long-term average in other habitats in the country. The highest proportions were in meadows and farmsteads, at 4.9% and 5.0% respectively. Shrews were not trapped on farms or in young orchards, and their relative abundance was very low in intensively managed orchards (0.006 individuals per 100 trap days). Neomys fodiens and N. anomalus were unexpectedly found in homesteads, including in outbuildings. Sorex araneus and S. minutus had similar diets. The trophic carbon/nitrogen discrimination factor between invertebrates and shrew hair was 2.74‱/3.98‱ for S. araneus, 1.90‱/3.78‱ for S. minutus in the orchards. The diet of N. fodiens and N. anomalus at the homesteads requires further investigation. We propose that the under-abundance of shrews may be due to contamination by plant protection products and a lack of invertebrates under intensive agricultural practices.

Lockdown's Silver Lining? Different Levels of Roadkill during the COVID-19 Times in Lithuania.

The impact of COVID-19 restrictions on human and vehicular mobility on the number of roadkills of wild mammals, and roe deer in particular, was assessed in Lithuania. We statistically analyzed the distribution of all mammals and roe deer (Capreolus capreolus) as the most abundant species annually from 2002 to 2022 and monthly from 2020 to 2021, including during the two restriction periods. Notably, there was a marked decrease in roadkill incidents on main, national and regional roads, particularly in April-May 2020 (the beginning of lockdown period I) and November-December 2020 (the beginning of lockdown period II), 5.1-20.8% and 33.6-54.4%, respectively. During these months, collisions with mammals on the A14 main road were reduced by 75-90%. However, there was a significant increase in the number of roadkills in urban areas, resulting in the total number of mammal-vehicle and roe deer-vehicle collisions in 2020 and 2021 being higher than expected based on long-term trends. However, after restrictions were eased, collision numbers with wildlife on the main, national and regional roads increased again and became higher than expected.

Protozoan Parasites of Sarcocystis spp. in Rodents from Commercial Orchards.

Small mammals are an important group of wildlife that can transmit pathogens to humans and animals. There is a lack of comprehensive studies on the protozoan parasites of the genus Sarcocystis in agricultural areas. The aim of the current research was to evaluate the prevalence of Sarcocystis spp., and to identify the parasite species found in the skeletal muscles of rodents and insectivores from commercial orchards. A total of 679 muscle samples from small mammals, mainly rodents (n = 674), belonging to eight species were examined. Muscle samples were pooled into groups, then digested, and the presence of the Sarcocystis species was confirmed by molecular methods. The examined parasites were determined in five rodent species, Apodemus agrarius, A. flavicollis, Clethrionomys glareolus, Microtus arvalis, and M. oeconomus. The prevalence of Sarcocystis spp. was low: 2.23% in voles and 0.79% in mice. Based on a sequence comparison of cox1 and 28S rDNA, four species were identified: S. myodes, Sarcocystis cf. strixi, Sarcocystis sp. Rod1, and Sarcocystis sp. Rod2. This is the first report of S. myodes in A. agrarius, A. flavicollis, and M. arvalis. The identified species were most closely related to Sarcocystis spp., and were transmitted by predatory mammals and birds. Future studies are needed to describe the species morphologically, as well as to define the host spectrum and to evaluate their possible pathogenicity.

The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs.

The Sicilian wolf remained isolated in Sicily from the end of the Pleistocene until its extermination in the 1930s-1960s. Given its long-term isolation on the island and distinctive morphology, the genetic origin of the Sicilian wolf remains debated. We sequenced four nuclear genomes and five mitogenomes from the seven existing museum specimens to investigate the Sicilian wolf ancestry, relationships with extant and extinct wolves and dogs, and diversity. Our results show that the Sicilian wolf is most closely related to the Italian wolf but carries ancestry from a lineage related to European Eneolithic and Bronze Age dogs. The average nucleotide diversity of the Sicilian wolf was half of the Italian wolf, with 37-50% of its genome contained in runs of homozygosity. Overall, we show that, by the time it went extinct, the Sicilian wolf had high inbreeding and low-genetic diversity, consistent with a population in an insular environment.

Small Mammal Diversity Changes in a Baltic Country, 1975-2021: A Review.

The structure and diversity of small mammal (SM) communities over the long term may show the influences of climate change, landscape changes and local disturbances. We review published data regarding SM trapping and owl pellet analysis from Lithuania (the most southerly of the three Baltic States, Northern Europe), covering the period 1975-2021. Over decades, we analysed trends in the diversity of SM communities and the proportions of species and proportions of trophic groups. The large increase in granivores, from 6.9% in 1975-1980 to 45.4% in 2011-2020 and 54.7% in 2021, coincided with a decrease in omnivores and insectivores. The proportion of herbivores increased less notably. At the species level, significant decreases in the proportions of M. arvalis, C. glareolus and S. araneus were accompanied by notable increases in the proportions of A. flavicollis and A. agrarius, the latter from 1.0% in 1975-1980 to 25.3% in 2021. Concluding, two periods were identified, specifically before the 1990s and subsequently. In the second period, in the aftermath of land-use changes within the country in 1990, diversity increased, and dominance decreased, a situation that has not subsequently changed. Not excluding the concomitant effects of climate change, we relate these patterns to the alterations in habitat and anthropogenic impact.

Long-term changes in a small mammal community in a temperate zone meadow subject to seasonal floods and habitat transformation.

We tested small mammal (SM) community response to the influence of seasonal floods and habitat transformation in a temporal zone meadow (west Lithuania). The habitat transitioned from a natural flooded meadow in 2008-2012 to a mowed and pastured area in 2020. SM were trapped in late summer to autumn using lines of 25 traps (145 in total), the number of trapping sessions being one or several per year. We tested the hypotheses that: (1) any reaction to the multiple disturbances is species-specific, that is, the relative abundance of SM species and their proportion in the community differs with respect to the flood magnitude and habitat transformation, and (2) at the guild level, disturbances favor habitat generalists, thereby changing the characteristics of SM community. The average relative density of SM was 20.25 individuals per 100 trap nights (range 7.56-40.67), with 4-year-long cyclical changes of density observed. In separate years, we recorded from 4 to 9 species; Shannon's diversity index varied from 0.46 to 2.19, with expressed change of the dominant species. Habitat generalist species were favored, while habitat specialists were disadvantaged. As the meadow transformation progressed, unfavored states in the SM community prevailed, with excessive numbers of granivore and herbivore species present. Our study suggests that multiple disturbances may lead to an increase in relative abundance, species richness, and diversity within the SM assemblages.

Factors Affecting Roadkills of Semi-Aquatic Mammals.

We previously showed that registration efforts and traffic intensity explain 90% of variation in mammal roadkill numbers, 70% of variation in the numbers of recorded species and 40% of diversity variation. Here we analyze semiaquatic mammal roadkill in Lithuania in 2002-2021, relating these to the monitoring effort. From 39,936 analyzed roadkill, the European beaver (Castor fiber) was registered 60 times, American mink (Neovison vison) 26 times, otter (Lutra lutra) 22 times and muskrat (Ondatra zibethica) 3 times. The average roadkill indexes were 0.000065, 0.00076, 0.00061 and 0.00010 ind./km/day, and the extrapolated annual roadkill for the country was 44-357, 36-456, 49-464 and 89-144 individuals, respectively. Beaver roadkill numbers correlated with the registration effort and traffic intensity, otter roadkill with registration effort only and mink with hunting bag (number of hunted individuals per year). Roadkill was not always related to proximity to water, with 38-54% of roadkill occurring over 200 m from the nearest water source. With American mink and muskrat being invasive species in the EU and otter protected in many countries, it is valuable to enhance the registrations of their roadkill (using targeted efforts by drivers, hunters or other citizen scientists) to obtain the extrapolated amount of roadkill and to use this knowledge in species management.

Bartonella spp. detection in laelapid (Mesostigmata: Laelapidae) mites collected from small rodents in Lithuania.

The genus Bartonella contains facultative Gram-negative intracellular bacteria from the family Bartonellaceae that can cause diseases in humans and animals. Various Bartonella species have been detected in rodents' ectoparasites, such as fleas, ticks, mites, and lice. However, the role of laelapid mites (Mesostigmata: Laelapidae) as carriers of Bartonella spp. needs to be confirmed. We aimed to investigate the presence of Bartonella spp. in laelapid mites collected from small rodents in Lithuania using real-time PCR targeting the transfer-messenger RNA/tmRNA (ssrA) gene and to characterize Bartonella strains using nested PCR and sequence analysis of the 16S-23S rRNA intergenic transcribed spacer region (ITS). A total of 271 laelapid mites of five species (Laelaps agilis, Haemogamasus nidi, Eulaelaps stabularis, Myonyssus gigas, and Hyperlaelaps microti) were collected from five rodent species (Apodemus flavicollis, Apodemus agrarius, Clethrionomys glareolus, Micromys minutus, and Microtus oeconomus) during 2015-2016. Bartonella DNA was detected in three mite species L. agilis, M. gigas, and Hg. nidi with an overall prevalence of 11.4%. Sequence analysis of the 16S-23S rRNA ITS region revealed the presence of Bartonella taylorii in L. agilis, Hg. nidi, and M. gigas, and Bartonella grahamii in L. agilis. Our results suggest that laelapid mites are involved in the maintenance of rodent-associated Bartonella spp. in nature. To the best of the authors' knowledge, this is the first study to demonstrate the presence of Bartonella spp. DNA in laelapid mites from small rodents.