Fundão tailings dam failure in Brazil: Evidence of a population exposed to high levels of Al, As, Hg, and Ni after a human biomonitoring study.

BACKGROUND: On November 5th, 2015, the Fundão mine tailings dam in Minas Gerais State, Brazil, failed, releasing more than 50 million m3 of mud, rich in toxic metals. After that, a massive environmental disaster began with the mud wave flowing more than 600 km, until the mouth of Doce River, in Espírito Santo State, and finally reaching the Atlantic Ocean. A vast area was contaminated, affecting the ecosystem and several communities. Despite the tremendous environmental disaster, little is known concerning the population's exposure to toxic elements yet. METHODS: Thus, a cross-sectional study was for the first time conducted in three communities directly affected by the disaster (Regência, Povoação, and Campo Grande) in Espírito Santo State, to evaluate the levels of 11 chemical elements (Al, As, Cd, Co, Cu, Hg, Mn, Ni, Pb, Se, and Zn) in blood. Sample analysis (n = 300) was performed by Inductively Coupled Plasma Mass Spectrometry (ICP-MS). RESULTS: Our data show high levels of exposure to Al, As, Hg, and Ni. Mean values in blood were 60 µg/L (ranging from 9 to 434 µg/L), 10.9 µg/L (ranging from 5.81 to 269 µg/L), 6.4 µg/L (ranging from 0.05 to 103 µg/L) and 2.7 µg/L (ranging from 0.08 to 21 µg/L) for Al, As, Hg and Ni, respectively. Moreover, after applying a multiple regression model, we found community, drinking water, fish, seafood consumption, and smoking habits associated with metal/metalloid levels in their body. Well and tap water intake were identified as important sources of exposure to aluminum and nickel. CONCLUSIONS: Our findings represent health risks to the groups living in the areas affected by the tailings dam failure, calling for further studies to evaluate the potential health effects of high exposure to metals and remediation actions from public health Brazilian authorities.

CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis.

BACKGROUND: Finding meaningful gene-gene interaction and the main Transcription Factors (TFs) in co-expression networks is one of the most important challenges in gene expression data mining. RESULTS: Here, we developed the R package "CeTF" that integrates the Partial Correlation with Information Theory (PCIT) and Regulatory Impact Factors (RIF) algorithms applied to gene expression data from microarray, RNA-seq, or single-cell RNA-seq platforms. This approach allows identifying the transcription factors most likely to regulate a given network in different biological systems - for example, regulation of gene pathways in tumor stromal cells and tumor cells of the same tumor. This pipeline can be easily integrated into the high-throughput analysis. To demonstrate the CeTF package application, we analyzed gastric cancer RNA-seq data obtained from TCGA (The Cancer Genome Atlas) and found the HOXB3 gene as the second most relevant TFs with a high regulatory impact (TFs-HRi) regulating gene pathways in the cell cycle. CONCLUSION: This preliminary finding shows the potential of CeTF to list master regulators of gene networks. CeTF was designed as a user-friendly tool that provides many highly automated functions without requiring the user to perform many complicated processes. It is available on Bioconductor ( http://bioconductor.org/packages/CeTF ) and GitHub ( http://github.com/cbiagii/CeTF ).

An overview of the current progress, challenges, and prospects of human biomonitoring and exposome studies.

Human Biomonitoring (HB), the process for determining whether and to what extent chemical substances penetrated our bodies, serves as a useful tool to quantify human exposure to pollutants. In cases of nutrition and physiologic status, HB plays a critical role in the identification of excess or deficiency of essential nutrients. In pollutant HB studies, levels of substances measured in body fluids (blood, urine, and breast milk) or tissues (hair, nails or teeth) aid in the identification of potential health risks or associated adverse effects. However, even as a widespread practice in several countries, most HB studies reflect exposure to a single compound or mixtures which are measured at a single time point in lifecycle. On the other hand, throughout an individual's lifespan, the contact with different physical, chemical, and social stressors occurs at varying intensities, differing times and durations. Further, the interaction between stressors and body receptors leads to dynamic responses of the entire biological system including proteome, metabolome, transcriptome, and adductome. Bearing this in mind, a relatively new vision in exposure science, defined as the exposome, is postulated to expand the traditional practice of measuring a single exposure to one or few chemicals at one-time point to an approach that addresses measures of exposure to multiple stressors throughout the lifespan. With the exposome concept, the science of exposure advances to an Environment-Wide Association Perspective, which might exhibit a stronger relationship with good health or disease conditions for an individual (phenotype). Thus, this critical review focused on the current progress of HB and exposome investigations, anticipating some challenges, strategies, and future needs to be taken into account for designing future surveys.

Association among H. pylori virulence markers dupA, cagA and vacA in Brazilian patients.

BACKGROUND: Only a few Helicobacter pylori-infected individuals develop severe gastric diseases and virulence factors of H. pylori appear to be involved in such clinical outcomes. Duodenal ulcer promoting gene A (dupA) is a novel virulence factor of Helicobacter pylori that is associated with duodenal ulcer development and reduced risk for gastric carcinoma in some populations. The aims of the present study were to determine the presence of dupA gene and evaluate the association among dupA and other virulence factors including cagA and vacA in Brazilian patients. Gastric biopsies were obtained from 205 dyspeptic patients (100 children and 105 adults). DNA was extracted and analyzed for the presence of H. pylori and its virulence factors using the polymerase chain reaction method. RESULTS: Patients with gastritis tested positive for H. pylori more frequently. The dupA gene was detected in 41.5% of them (85/205); cagA gene was found in 98 isolates (47.8%) and vacA genotype s1/m1 in 50.2%, s1/m2 in 8.3%, s2/m2 in 36.6%, s2/m1 in 0.5% and s1/s2/m1/m2 in 4.4%. We also verified a significant association between cagA and dupA genes [p = 0.0003, relative risk (RR) 1.73 and confidence interval [CI] = 1.3-2.3]. The genotypes s1/m1 were also associated with dupA gene (p = 0.0001, RR: 1.72 and CI: 1.3-2.2). The same associations were found when analyzing pediatric and adult groups of patients individually. CONCLUSION: Ours results suggest that dupA is highly frequent in Brazilian patients and is associated with cagA gene and vacA s1/m1 genotype, and it may be considered an important virulence factor in the development of gastric diseases in adults or children.