Detalhe da pesquisa
1.
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data.
Bioinformatics
; 40(2)2024 02 01.
Artigo
Inglês
| MEDLINE | ID: mdl-38192003
2.
Updated MS²PIP web server supports cutting-edge proteomics applications.
Nucleic Acids Res
; 51(W1): W338-W342, 2023 07 05.
Artigo
Inglês
| MEDLINE | ID: mdl-37140039
3.
Intensity and retention time prediction improves the rescoring of protein-nucleic acid cross-links.
Proteomics
; 24(8): e2300144, 2024 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-38629965
4.
MS2Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0.
J Proteome Res
; 2024 Mar 16.
Artigo
Inglês
| MEDLINE | ID: mdl-38491990
5.
Benefit of In Silico Predicted Spectral Libraries in Data-Independent Acquisition Data Analysis Workflows.
J Proteome Res
; 23(6): 2078-2089, 2024 Jun 07.
Artigo
Inglês
| MEDLINE | ID: mdl-38666436
6.
DeepLC can predict retention times for peptides that carry as-yet unseen modifications.
Nat Methods
; 18(11): 1363-1369, 2021 11.
Artigo
Inglês
| MEDLINE | ID: mdl-34711972
7.
MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates.
Mol Cell Proteomics
; 21(8): 100266, 2022 08.
Artigo
Inglês
| MEDLINE | ID: mdl-35803561
8.
psm_utils: A High-Level Python API for Parsing and Handling Peptide-Spectrum Matches and Proteomics Search Results.
J Proteome Res
; 22(2): 557-560, 2023 02 03.
Artigo
Inglês
| MEDLINE | ID: mdl-36508242
9.
Machine Learning on Large-Scale Proteomics Data Identifies Tissue and Cell-Type Specific Proteins.
J Proteome Res
; 22(4): 1181-1192, 2023 04 07.
Artigo
Inglês
| MEDLINE | ID: mdl-36963412
10.
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.
J Proteome Res
; 22(2): 632-636, 2023 02 03.
Artigo
Inglês
| MEDLINE | ID: mdl-36693629
11.
Toward an Integrated Machine Learning Model of a Proteomics Experiment.
J Proteome Res
; 22(3): 681-696, 2023 03 03.
Artigo
Inglês
| MEDLINE | ID: mdl-36744821
12.
The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions.
Microb Cell Fact
; 22(1): 254, 2023 Dec 11.
Artigo
Inglês
| MEDLINE | ID: mdl-38072930
13.
Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator.
J Proteome Res
; 21(5): 1365-1370, 2022 05 06.
Artigo
Inglês
| MEDLINE | ID: mdl-35446579
14.
Personalized Proteome: Comparing Proteogenomics and Open Variant Search Approaches for Single Amino Acid Variant Detection.
J Proteome Res
; 20(6): 3353-3364, 2021 06 04.
Artigo
Inglês
| MEDLINE | ID: mdl-33998808
15.
Graph Convolutional Networks for Improved Prediction and Interpretability of Chromatographic Retention Data.
Anal Chem
; 93(47): 15633-15641, 2021 11 30.
Artigo
Inglês
| MEDLINE | ID: mdl-34780168
16.
The Age of Data-Driven Proteomics: How Machine Learning Enables Novel Workflows.
Proteomics
; 20(21-22): e1900351, 2020 11.
Artigo
Inglês
| MEDLINE | ID: mdl-32267083
17.
Generalized Calibration Across Liquid Chromatography Setups for Generic Prediction of Small-Molecule Retention Times.
Anal Chem
; 92(9): 6571-6578, 2020 05 05.
Artigo
Inglês
| MEDLINE | ID: mdl-32281370
18.
Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions.
Bioinformatics
; 35(24): 5243-5248, 2019 12 15.
Artigo
Inglês
| MEDLINE | ID: mdl-31077310
19.
Comprehensive and Empirical Evaluation of Machine Learning Algorithms for Small Molecule LC Retention Time Prediction.
Anal Chem
; 91(5): 3694-3703, 2019 03 05.
Artigo
Inglês
| MEDLINE | ID: mdl-30702864
20.
Predicting ion mobility collision cross sections and assessing prediction variation by combining conventional and data driven modeling.
Talanta
; 274: 125970, 2024 Jul 01.
Artigo
Inglês
| MEDLINE | ID: mdl-38621320